Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0000758

Physical Location & Seq

Genomic Coordinates Forward (+)

4239223 .. 4245470

Gene Structure 6248 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026614

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGAAGCTGGTATTGATGAATATGGAAATAAAAGGTTTGTGTGGCCTCAGAATAAAGAGTTTGATACTTTCTTGGGTGACTGGGTTTTGACTATCCAGGAGATGGTGAGAGGGAAGATTGAGGTGAAAAGAATCGAAAATGCGACAAGCAGGCAGGTAACCTTTTCGAAACGTCGAAACGGGCTGTTGAAGAAGGCTTATGAGCTTTCGGTTCTTTGCGATGCCGAAGTTGCAGTGATCATCTTTTCTCAGAATGGCAGGCTCTACGAGTTTTCCAGCTCTGACATGCAAAAGACTATAAACCAATACCATAAACATGCAAAAGGTGTGCAAACCAACACTATTGAAGTGGAACAGTGTATGCAGCAATTGAAGCATGAATCAGCTGACATGACCAAGAAGATTGAGATCCTAGAAGCTTCTCAACGGAGGCTTTTGGGACATGACTTAGATTCTTGCTCTGCTCAAGAACTCAATCAGATCAGTAACCAGCTCGAGCGAAGCTTGTGCATTGTACGAGAGAGAAAGGCTCAGCTATTCATGGAGCAGATAGAACGACTAAAAGCGAAGGGGAGGCTGCTCTTAGAAGAGAATGTAAAACTGCACACAGAGTGTGGTGCAAGGCGTTGTCAGAAACCTTTAATTCAAAAAAAAGGAGTTGGGGCGGCAAGTTGTAACTGGATGAATCGTAGTCAAAGTAGCAGCAGTCAAACAATTAGTAATTCAGATCAGGTAGAGACCAGATTGTTCATCGGACCGCCAGTGATGCACTCTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0007568 GO:0008150 GO:0009791 GO:0009838 GO:0009889 GO:0009908 GO:0009909 GO:0010150 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048437 GO:0048580 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080187 GO:0090567 GO:0090693 GO:0099402 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

260

Amino Acids

29.74

Weight (kDa)

8.78

Isoelectric Point (pI)

53.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	44 - 91	1.3e-27	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	121 - 204	2.5e-22	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000758)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165
fragaria_vesca	FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740
malus_domestica	MD00G1004400.v1.1 MD00G1004600.v1.1 MD01G1193300.v1.1 MD01G1193500.v1.1 MD01G1193600.v1.1
prunus_persica	Prupe.2G287500_v2.0.a1
pyrus_communis	pycom01g20400 pycom01g20410 pycom07g23970
rosa_chinensis	RchiOBHm_Chr1g0376251 RchiOBHm_Chr1g0376271 RchiOBHm_Chr1g0376291
rosa_laevigata	RLG00000026614 RLG00000026615 RLG00000026616
rosa_multiflora	Rmu_co8488767.1_g000001 Rmu_ssc0000116.1_g000059 Rmu_ssc0000116.1_g000060
rosa_roxburghii	Rroxscaffold_4G00282230 Rroxscaffold_4G00282240 Rroxscaffold_4G00282270
rosa_rugosa	Rorug01G0394900 Rorug01G0395000
rosa_samantha	Rh1AG406300 Rh1AG406400 Rh1BG370100 Rh1BG370400 Rh1CG383000 Rh1CG383100 Rh1CG383200 Rh1DG399900 Rh1DG400200
rosa_wichuraiana	Rw1G036050 Rw1G036060 Rw1G036070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	145
AccB7I	CCANNNNNTGG	1 cut(s)	103
AciI	CCGC	2 cut(s)	665, 758
AclWI	GGATC	1 cut(s)	403
AdeI	CACNNNGTG	1 cut(s)	612
AfaI	GTAC	1 cut(s)	516
AfiI	CCNNNNNNNGG	1 cut(s)	103
AgsI	TTSAA	4 cut(s)	190, 347, 373, 647
AjnI	CCWGG	1 cut(s)	96
AluBI	AGCT	8 cut(s)	8, 205, 279, 386, 419, 493, 504, 535
AluI	AGCT	8 cut(s)	8, 205, 279, 386, 419, 493, 504, 535
Alw26I	GTCTC	1 cut(s)	731
AlwI	GGATC	1 cut(s)	403
Ama87I	CYCGRG	1 cut(s)	494
AoxI	GGCC	1 cut(s)	44
ApeKI	GCWGC	3 cut(s)	364, 577, 702
AspS9I	GGNCC	1 cut(s)	755
AsuHPI	GGTGA	3 cut(s)	89, 118, 136
AsuII	TTCGAA	1 cut(s)	167
AvaI	CYCGRG	1 cut(s)	494
AvaII	GGWCC	1 cut(s)	755
BbvI	GCAGC	3 cut(s)	376, 564, 714
BccI	CCATC	1 cut(s)	97
BcgI	CGANNNNNNTGC	2 cut(s)	489, 523
BciT130I	CCWGG	1 cut(s)	98
BclI	TGATCA	1 cut(s)	237
BcoDI	GTCTC	1 cut(s)	731
BfaI	CTAG	1 cut(s)	413
BfuAI	ACCTGC	1 cut(s)	145
BisI	GCNGC	4 cut(s)	365, 578, 666, 703
BlpI	GCTNAGC	1 cut(s)	531
BlsI	GCNGC	4 cut(s)	366, 579, 667, 704
Bme1390I	CCNGG	1 cut(s)	98
Bme18I	GGWCC	1 cut(s)	755
BmeT110I	CYCGRG	1 cut(s)	494
BmgT120I	GGNCC	1 cut(s)	755
BmrFI	CCNGG	1 cut(s)	98
BmrI	ACTGGG	1 cut(s)	91
BmsI	GCATC	2 cut(s)	211, 756
BmuI	ACTGGG	1 cut(s)	91
BplI	GAGNNNNNCTC	2 cut(s)	514, 546
Bpu1102I	GCTNAGC	1 cut(s)	531
Bpu14I	TTCGAA	1 cut(s)	167
BpuEI	CTTGAG	1 cut(s)	450
BsaBI	GATNNNNATC	1 cut(s)	407
BsaI	GGTCTC	1 cut(s)	731
Bsc4I	CCNNNNNNNGG	1 cut(s)	103
Bse1I	ACTGG	3 cut(s)	86, 683, 761
Bse8I	GATNNNNATC	1 cut(s)	407
BseBI	CCWGG	1 cut(s)	98
BseGI	GGATG	1 cut(s)	687
BseJI	GATNNNNATC	1 cut(s)	407
BseLI	CCNNNNNNNGG	1 cut(s)	103
BseMII	CTCAG	3 cut(s)	62, 263, 545
BseNI	ACTGG	3 cut(s)	86, 683, 761
BseXI	GCAGC	3 cut(s)	376, 564, 714
BsgI	GTGCAG	1 cut(s)	587
BshFI	GGCC	1 cut(s)	46
BsiHKCI	CYCGRG	1 cut(s)	494
BslFI	GGGAC	1 cut(s)	453
BslI	CCNNNNNNNGG	1 cut(s)	103
BsmAI	GTCTC	1 cut(s)	731
BsmFI	GGGAC	1 cut(s)	453
BsnI	GGCC	1 cut(s)	46
Bso31I	GGTCTC	1 cut(s)	731
BsoBI	CYCGRG	1 cut(s)	494
Bsp119I	TTCGAA	1 cut(s)	167
Bsp143I	GATC	4 cut(s)	237, 408, 480, 727
Bsp1720I	GCTNAGC	1 cut(s)	531
BspACI	CCGC	2 cut(s)	665, 758
BspANI	GGCC	1 cut(s)	46
BspCNI	CTCAG	3 cut(s)	61, 262, 544
BspMI	ACCTGC	1 cut(s)	145
BspPI	GGATC	1 cut(s)	403
BspT104I	TTCGAA	1 cut(s)	167
BspTNI	GGTCTC	1 cut(s)	731
BsrI	ACTGG	3 cut(s)	86, 683, 761
BssMI	GATC	4 cut(s)	237, 408, 480, 727
Bst2UI	CCWGG	1 cut(s)	98
Bst4CI	ACNGT	1 cut(s)	357
Bst6I	CTCTTC	1 cut(s)	582
BstBI	TTCGAA	1 cut(s)	167
BstC8I	GCNNGC	2 cut(s)	152, 260
BstDEI	CTNAG	5 cut(s)	48, 249, 448, 531, 583
BstEII	GGTNACC	1 cut(s)	157
BstF5I	GGATG	1 cut(s)	687
BstKTI	GATC	4 cut(s)	240, 411, 483, 730
BstMAI	GTCTC	1 cut(s)	731
BstMBI	GATC	4 cut(s)	237, 408, 480, 727
BstMWI	GCNNNNNNNGC	3 cut(s)	230, 373, 766
BstNI	CCWGG	1 cut(s)	98
BstNSI	RCATGY	2 cut(s)	289, 320
BstPI	GGTNACC	1 cut(s)	157
BstSCI	CCNGG	1 cut(s)	96
BstV1I	GCAGC	3 cut(s)	376, 564, 714
BstX2I	RGATCY	1 cut(s)	408
BstYI	RGATCY	1 cut(s)	408
BsuRI	GGCC	1 cut(s)	46
BtgZI	GCGATG	1 cut(s)	234
BtsCI	GGATG	1 cut(s)	687
BtsI	GCAGTG	1 cut(s)	240
BtsIMutI	CAGTG	3 cut(s)	240, 362, 768
BveI	ACCTGC	1 cut(s)	145
Cac8I	GCNNGC	2 cut(s)	152, 260
Cfr13I	GGNCC	1 cut(s)	755
CpoI	CGGWCCG	1 cut(s)	755
Csp6I	GTAC	1 cut(s)	515
CspI	CGGWCCG	1 cut(s)	755
CviAII	CATG	6 cut(s)	286, 317, 377, 391, 443, 541
CviQI	GTAC	1 cut(s)	515
DdeI	CTNAG	5 cut(s)	48, 249, 448, 531, 583
DpnI	GATC	4 cut(s)	239, 410, 482, 729
DpnII	GATC	4 cut(s)	237, 408, 480, 727
DraIII	CACNNNGTG	1 cut(s)	612
Eam1104I	CTCTTC	1 cut(s)	582
EarI	CTCTTC	1 cut(s)	582
Eco31I	GGTCTC	1 cut(s)	731
Eco47I	GGWCC	1 cut(s)	755
Eco88I	CYCGRG	1 cut(s)	494
Eco91I	GGTNACC	1 cut(s)	157
EcoO65I	GGTNACC	1 cut(s)	157
EcoRII	CCWGG	1 cut(s)	96
FaeI	CATG	6 cut(s)	289, 320, 380, 394, 446, 544
FaqI	GGGAC	1 cut(s)	453
FatI	CATG	6 cut(s)	285, 316, 376, 390, 442, 540
FbaI	TGATCA	1 cut(s)	237
Fnu4HI	GCNGC	4 cut(s)	365, 578, 666, 703
FokI	GGATG	1 cut(s)	694
Fsp4HI	GCNGC	4 cut(s)	365, 578, 666, 703
FspBI	CTAG	1 cut(s)	413
GluI	GCNGC	4 cut(s)	365, 578, 666, 703
HaeIII	GGCC	1 cut(s)	46
Hin1II	CATG	6 cut(s)	289, 320, 380, 394, 446, 544
HindIII	AAGCTT	2 cut(s)	417, 502
HinfI	GANTC	4 cut(s)	132, 380, 452, 685
HphI	GGTGA	3 cut(s)	89, 118, 136
Hpy188I	TCNGA	8 cut(s)	51, 252, 283, 480, 633, 727, 755, 775
Hpy188III	TCNNGA	1 cut(s)	467
Hpy99I	CGWCG	1 cut(s)	177
HpyAV	CCTTC	2 cut(s)	187, 562
HpyCH4III	ACNGT	1 cut(s)	357
HpyCH4IV	ACGT	1 cut(s)	172
HpyCH4V	TGCA	9 cut(s)	233, 289, 320, 331, 364, 510, 604, 620, 769
HpyF10VI	GCNNNNNNNGC	3 cut(s)	230, 373, 766
HpyF3I	CTNAG	5 cut(s)	48, 249, 448, 531, 583
HpySE526I	ACGT	1 cut(s)	172
Hsp92II	CATG	6 cut(s)	289, 320, 380, 394, 446, 544
Ksp22I	TGATCA	1 cut(s)	237
Kzo9I	GATC	4 cut(s)	237, 408, 480, 727
LmnI	GCTCC	1 cut(s)	544
Lsp1109I	GCAGC	3 cut(s)	376, 564, 714
LweI	GCATC	2 cut(s)	211, 756
MaeI	CTAG	1 cut(s)	413
MaeII	ACGT	1 cut(s)	172
MaeIII	GTNAC	4 cut(s)	77, 157, 485, 674
MalI	GATC	4 cut(s)	239, 410, 482, 729
MboI	GATC	4 cut(s)	237, 408, 480, 727
MboII	GAAGA	4 cut(s)	127, 202, 412, 599
MfeI	CAATTG	1 cut(s)	368
MflI	RGATCY	1 cut(s)	408
MluCI	AATT	4 cut(s)	368, 642, 714, 721
MnlI	CCTC	5 cut(s)	57, 104, 115, 423, 567
MseI	TTAA	1 cut(s)	641
MslI	CAYNNNNRTG	1 cut(s)	315
MspA1I	CMGCKG	1 cut(s)	386
MspR9I	CCNGG	1 cut(s)	98
MunI	CAATTG	1 cut(s)	368
MvaI	CCWGG	1 cut(s)	98
MwoI	GCNNNNNNNGC	3 cut(s)	230, 373, 766
NdeII	GATC	4 cut(s)	237, 408, 480, 727
NlaIII	CATG	6 cut(s)	289, 320, 380, 394, 446, 544
NmuCI	GTSAC	1 cut(s)	77
NspI	RCATGY	2 cut(s)	289, 320
NspV	TTCGAA	1 cut(s)	167
PaeR7I	CTCGAG	1 cut(s)	494
PfeI	GAWTC	4 cut(s)	132, 380, 452, 685
PflMI	CCANNNNNTGG	1 cut(s)	103
PfoI	TCCNGGA	1 cut(s)	96
PkrI	GCNGC	4 cut(s)	366, 579, 667, 704
Psp6I	CCWGG	1 cut(s)	96
PspEI	GGTNACC	1 cut(s)	157
PspGI	CCWGG	1 cut(s)	96
PspPI	GGNCC	1 cut(s)	755
PspXI	VCTCGAGB	1 cut(s)	494
PsuI	RGATCY	1 cut(s)	408
PvuII	CAGCTG	1 cut(s)	386
RsaI	GTAC	1 cut(s)	516
RsaNI	GTAC	1 cut(s)	515
RseI	CAYNNNNRTG	1 cut(s)	315
Rsr2I	CGGWCCG	1 cut(s)	755
RsrII	CGGWCCG	1 cut(s)	755
SaqAI	TTAA	1 cut(s)	641
SatI	GCNGC	4 cut(s)	365, 578, 666, 703
Sau3AI	GATC	4 cut(s)	237, 408, 480, 727
Sau96I	GGNCC	1 cut(s)	755
ScrFI	CCNGG	1 cut(s)	98
SfaNI	GCATC	2 cut(s)	211, 756
Sfr274I	CTCGAG	1 cut(s)	494
SfuI	TTCGAA	1 cut(s)	167
SinI	GGWCC	1 cut(s)	755
SlaI	CTCGAG	1 cut(s)	494
SmiMI	CAYNNNNRTG	1 cut(s)	315
SmlI	CTYRAG	2 cut(s)	465, 494
SmoI	CTYRAG	2 cut(s)	465, 494
Sse9I	AATT	4 cut(s)	368, 642, 714, 721
SsiI	CCGC	2 cut(s)	665, 758
SspMI	CTAG	1 cut(s)	413
StyD4I	CCNGG	1 cut(s)	96
TaaI	ACNGT	1 cut(s)	357
TaiI	ACGT	1 cut(s)	175
TaqI	TCGA	4 cut(s)	135, 167, 175, 495
TasI	AATT	4 cut(s)	368, 642, 714, 721
TauI	GCSGC	1 cut(s)	668
TfiI	GAWTC	4 cut(s)	132, 380, 452, 685
Tru1I	TTAA	1 cut(s)	641
Tru9I	TTAA	1 cut(s)	641
TscAI	CASTG	3 cut(s)	240, 362, 768
TseFI	GTSAC	1 cut(s)	77
TseI	GCWGC	3 cut(s)	364, 577, 702
Tsp45I	GTSAC	1 cut(s)	77
TspDTI	ATGAA	5 cut(s)	33, 393, 529, 698, 739
TspGWI	ACGGA	1 cut(s)	442
TspRI	CASTG	3 cut(s)	240, 362, 768
Van91I	CCANNNNNTGG	1 cut(s)	103
VpaK11BI	GGWCC	1 cut(s)	755
XceI	RCATGY	2 cut(s)	289, 320
XhoI	CTCGAG	1 cut(s)	494
XspI	CTAG	1 cut(s)	413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.