Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000758

Physical Location & Seq

Genomic Coordinates Forward (+)

4327733 .. 4332050

Gene Structure 4318 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00282270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGTGAGAGGGAAGATTGAGGTGAAAAGAATCGAAAATGCGACAAGCAGGCAGGTAACCTTTTCGAAACGTCGAAACGGGCTGTTGAAGAAGGCTTTTGAGCTTTCGGTTCTTTGCGATGCCGAAGTTGCAGTCATCGTCTTTTCTCCGAAGGGCAGGCTCTATGAGTTTTCTAGCTCTGACATGCAAAAGACTATAAAAAAATACCATAAACATGCAAAAGGTGCGCTAACCAACACTACTGAAGTGGAACAGTATATGCAGCAATTGAAGCATGAATCAGCTGACATGGCCAAGAAGATCGAGACCCTAGAAGCTTCTCAACGGTTTATGACTTACTTTGATCTTCATCTCATGAGGCTTTTGGGACATGACTTGGATCCTTGCTCTGCTCAAGAACTCAATCAGATCAGTAGCCAGCTCGAGCGAAGCTTGCGCATTGTACGAGAGAGAAAGGATCAGCTAATCACGGAGCAGATAGAACGACTGAGAGCAAAGGAGAGGCTCCTCTTAGAAGAGAATGCAAAACTACACACAGAGTGTGGTACAAGGCCTTGTCAGAAACCTTTAGTTCAAGAAAAAGGAGTTGGGGCAGCAAGTTATAACTGGATTAATAGTAGTCAAAGTAGCAGCAGCCAAACAATTAATAATTCAGATCAGGTAGAGACTAGATTGTTCATCGGACCGCCAGTGATGCGCTGTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0007568 GO:0008150 GO:0009791 GO:0009838 GO:0009889 GO:0009908 GO:0009909 GO:0010150 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048437 GO:0048580 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080187 GO:0090567 GO:0090693 GO:0099402 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

235

Amino Acids

26.99

Weight (kDa)

9.16

Isoelectric Point (pI)

46.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	2e-27	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	86 - 180	1.1e-18	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000758)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165
fragaria_vesca	FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740
malus_domestica	MD00G1004400.v1.1 MD00G1004600.v1.1 MD01G1193300.v1.1 MD01G1193500.v1.1 MD01G1193600.v1.1
prunus_persica	Prupe.2G287500_v2.0.a1
pyrus_communis	pycom01g20400 pycom01g20410 pycom07g23970
rosa_chinensis	RchiOBHm_Chr1g0376251 RchiOBHm_Chr1g0376271 RchiOBHm_Chr1g0376291
rosa_laevigata	RLG00000026614 RLG00000026615 RLG00000026616
rosa_multiflora	Rmu_co8488767.1_g000001 Rmu_ssc0000116.1_g000059 Rmu_ssc0000116.1_g000060
rosa_roxburghii	Rroxscaffold_4G00282230 Rroxscaffold_4G00282240 Rroxscaffold_4G00282270
rosa_rugosa	Rorug01G0394900 Rorug01G0395000
rosa_samantha	Rh1AG406300 Rh1AG406400 Rh1BG370100 Rh1BG370400 Rh1CG383000 Rh1CG383100 Rh1CG383200 Rh1DG399900 Rh1DG400200
rosa_wichuraiana	Rw1G036050 Rw1G036060 Rw1G036070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	603
Acc16I	TGCGCA	1 cut(s)	437
Acc36I	ACCTGC	1 cut(s)	43
AciI	CCGC	1 cut(s)	686
AclWI	GGATC	3 cut(s)	374, 387, 465
AcoI	YGGCCR	1 cut(s)	291
AcuI	CTGAAG	1 cut(s)	264
AdeI	CACNNNGTG	1 cut(s)	540
AfaI	GTAC	2 cut(s)	444, 547
AgsI	TTSAA	3 cut(s)	88, 271, 575
AjuI	GAANNNNNNNTTGG	2 cut(s)	570, 602
AluBI	AGCT	7 cut(s)	103, 177, 284, 317, 421, 432, 463
AluI	AGCT	7 cut(s)	103, 177, 284, 317, 421, 432, 463
Alw26I	GTCTC	2 cut(s)	299, 659
AlwI	GGATC	3 cut(s)	374, 387, 465
Ama87I	CYCGRG	1 cut(s)	422
AoxI	GGCC	2 cut(s)	291, 551
ApeKI	GCWGC	4 cut(s)	262, 593, 630, 633
ArsI	GACNNNNNNTTYG	2 cut(s)	117, 149
AseI	ATTAAT	2 cut(s)	612, 645
AspLEI	GCGC	3 cut(s)	229, 438, 699
AspS9I	GGNCC	1 cut(s)	683
AsuHPI	GGTGA	2 cut(s)	16, 34
AsuII	TTCGAA	1 cut(s)	65
AvaI	CYCGRG	1 cut(s)	422
AvaII	GGWCC	1 cut(s)	683
BalI	TGGCCA	1 cut(s)	293
BamHI	GGATCC	1 cut(s)	379
BbvI	GCAGC	4 cut(s)	274, 605, 642, 645
BcoDI	GTCTC	2 cut(s)	299, 659
BfaI	CTAG	3 cut(s)	174, 311, 669
BfuAI	ACCTGC	1 cut(s)	43
BisI	GCNGC	4 cut(s)	263, 594, 631, 634
BlsI	GCNGC	4 cut(s)	264, 595, 632, 635
Bme18I	GGWCC	1 cut(s)	683
BmeT110I	CYCGRG	1 cut(s)	422
BmgT120I	GGNCC	1 cut(s)	683
BmiI	GGNNCC	2 cut(s)	381, 506
BmsI	GCATC	2 cut(s)	109, 684
Bpu14I	TTCGAA	1 cut(s)	65
BpuEI	CTTGAG	1 cut(s)	378
BsaBI	GATNNNNATC	1 cut(s)	348
BsaI	GGTCTC	1 cut(s)	299
Bse1I	ACTGG	2 cut(s)	611, 689
Bse8I	GATNNNNATC	1 cut(s)	348
BseJI	GATNNNNATC	1 cut(s)	348
BseMII	CTCAG	1 cut(s)	479
BseNI	ACTGG	2 cut(s)	611, 689
BseRI	GAGGAG	1 cut(s)	497
BseXI	GCAGC	4 cut(s)	274, 605, 642, 645
BshFI	GGCC	2 cut(s)	293, 553
BsiHKCI	CYCGRG	1 cut(s)	422
BslFI	GGGAC	1 cut(s)	381
BsmAI	GTCTC	2 cut(s)	299, 659
BsmFI	GGGAC	1 cut(s)	381
BsmI	GAATGC	1 cut(s)	526
BsnI	GGCC	2 cut(s)	293, 553
Bso31I	GGTCTC	1 cut(s)	299
BsoBI	CYCGRG	1 cut(s)	422
Bsp119I	TTCGAA	1 cut(s)	65
Bsp143I	GATC	6 cut(s)	300, 343, 379, 408, 457, 655
BspACI	CCGC	1 cut(s)	686
BspANI	GGCC	2 cut(s)	293, 553
BspCNI	CTCAG	1 cut(s)	480
BspHI	TCATGA	1 cut(s)	354
BspLI	GGNNCC	2 cut(s)	381, 506
BspMI	ACCTGC	1 cut(s)	43
BspPI	GGATC	3 cut(s)	374, 387, 465
BspT104I	TTCGAA	1 cut(s)	65
BspTNI	GGTCTC	1 cut(s)	299
BsrI	ACTGG	2 cut(s)	611, 689
BssMI	GATC	6 cut(s)	300, 343, 379, 408, 457, 655
Bst4CI	ACNGT	2 cut(s)	255, 327
Bst6I	CTCTTC	1 cut(s)	510
BstAPI	GCANNNNNTGC	1 cut(s)	224
BstBI	TTCGAA	1 cut(s)	65
BstC8I	GCNNGC	4 cut(s)	50, 158, 419, 434
BstDEI	CTNAG	2 cut(s)	488, 511
BstEII	GGTNACC	1 cut(s)	55
BstHHI	GCGC	3 cut(s)	229, 438, 699
BstKTI	GATC	6 cut(s)	303, 346, 382, 411, 460, 658
BstMAI	GTCTC	2 cut(s)	299, 659
BstMBI	GATC	6 cut(s)	300, 343, 379, 408, 457, 655
BstMWI	GCNNNNNNNGC	6 cut(s)	128, 224, 271, 290, 433, 694
BstNSI	RCATGY	2 cut(s)	187, 218
BstPI	GGTNACC	1 cut(s)	55
BstV1I	GCAGC	4 cut(s)	274, 605, 642, 645
BstX2I	RGATCY	1 cut(s)	379
BstYI	RGATCY	1 cut(s)	379
BsuRI	GGCC	2 cut(s)	293, 553
BtgZI	GCGATG	1 cut(s)	132
BtsIMutI	CAGTG	1 cut(s)	696
BveI	ACCTGC	1 cut(s)	43
Cac8I	GCNNGC	4 cut(s)	50, 158, 419, 434
CciI	TCATGA	1 cut(s)	354
CfoI	GCGC	3 cut(s)	229, 438, 699
Cfr13I	GGNCC	1 cut(s)	683
CpoI	CGGWCCG	1 cut(s)	683
Csp6I	GTAC	2 cut(s)	443, 546
CspI	CGGWCCG	1 cut(s)	683
CviAII	CATG	6 cut(s)	184, 215, 275, 289, 355, 371
CviQI	GTAC	2 cut(s)	443, 546
DdeI	CTNAG	2 cut(s)	488, 511
DpnI	GATC	6 cut(s)	302, 345, 381, 410, 459, 657
DpnII	GATC	6 cut(s)	300, 343, 379, 408, 457, 655
DraIII	CACNNNGTG	1 cut(s)	540
EaeI	YGGCCR	1 cut(s)	291
Eam1104I	CTCTTC	1 cut(s)	510
EarI	CTCTTC	1 cut(s)	510
Eco147I	AGGCCT	1 cut(s)	553
Eco31I	GGTCTC	1 cut(s)	299
Eco47I	GGWCC	1 cut(s)	683
Eco57I	CTGAAG	1 cut(s)	264
Eco88I	CYCGRG	1 cut(s)	422
Eco91I	GGTNACC	1 cut(s)	55
EcoO65I	GGTNACC	1 cut(s)	55
FaeI	CATG	6 cut(s)	187, 218, 278, 292, 358, 374
FaqI	GGGAC	1 cut(s)	381
FatI	CATG	6 cut(s)	183, 214, 274, 288, 354, 370
Fnu4HI	GCNGC	4 cut(s)	263, 594, 631, 634
Fsp4HI	GCNGC	4 cut(s)	263, 594, 631, 634
FspBI	CTAG	3 cut(s)	174, 311, 669
FspI	TGCGCA	1 cut(s)	437
GlaI	GCGC	3 cut(s)	228, 437, 698
GluI	GCNGC	4 cut(s)	263, 594, 631, 634
HaeIII	GGCC	2 cut(s)	293, 553
HhaI	GCGC	3 cut(s)	229, 438, 699
Hin1II	CATG	6 cut(s)	187, 218, 278, 292, 358, 374
Hin6I	GCGC	3 cut(s)	227, 436, 697
HinP1I	GCGC	3 cut(s)	227, 436, 697
HindIII	AAGCTT	2 cut(s)	315, 430
HinfI	GANTC	2 cut(s)	30, 278
HphI	GGTGA	2 cut(s)	16, 34
Hpy188I	TCNGA	6 cut(s)	150, 181, 408, 561, 655, 683
Hpy188III	TCNNGA	4 cut(s)	304, 355, 395, 575
Hpy99I	CGWCG	1 cut(s)	75
HpyAV	CCTTC	2 cut(s)	85, 145
HpyCH4III	ACNGT	2 cut(s)	255, 327
HpyCH4IV	ACGT	1 cut(s)	70
HpyCH4V	TGCA	5 cut(s)	131, 187, 218, 262, 524
HpyF10VI	GCNNNNNNNGC	6 cut(s)	128, 224, 271, 290, 433, 694
HpyF3I	CTNAG	2 cut(s)	488, 511
HpySE526I	ACGT	1 cut(s)	70
Hsp92II	CATG	6 cut(s)	187, 218, 278, 292, 358, 374
HspAI	GCGC	3 cut(s)	227, 436, 697
Kzo9I	GATC	6 cut(s)	300, 343, 379, 408, 457, 655
LmnI	GCTCC	2 cut(s)	472, 510
LpnPI	CCDG	7 cut(s)	34, 38, 142, 431, 592, 644, 702
Lsp1109I	GCAGC	4 cut(s)	274, 605, 642, 645
LweI	GCATC	2 cut(s)	109, 684
MaeI	CTAG	3 cut(s)	174, 311, 669
MaeII	ACGT	1 cut(s)	70
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	6 cut(s)	302, 345, 381, 410, 459, 657
MboI	GATC	6 cut(s)	300, 343, 379, 408, 457, 655
MboII	GAAGA	5 cut(s)	25, 100, 310, 338, 527
MfeI	CAATTG	1 cut(s)	266
MflI	RGATCY	1 cut(s)	379
MlsI	TGGCCA	1 cut(s)	293
MluCI	AATT	3 cut(s)	266, 642, 649
MluNI	TGGCCA	1 cut(s)	293
MnlI	CCTC	4 cut(s)	13, 351, 495, 518
Mox20I	TGGCCA	1 cut(s)	293
MscI	TGGCCA	1 cut(s)	293
MseI	TTAA	2 cut(s)	612, 645
MslI	CAYNNNNRTG	1 cut(s)	213
Msp20I	TGGCCA	1 cut(s)	293
MspA1I	CMGCKG	1 cut(s)	284
MunI	CAATTG	1 cut(s)	266
Mva1269I	GAATGC	1 cut(s)	526
MwoI	GCNNNNNNNGC	6 cut(s)	128, 224, 271, 290, 433, 694
NdeII	GATC	6 cut(s)	300, 343, 379, 408, 457, 655
NlaIII	CATG	6 cut(s)	187, 218, 278, 292, 358, 374
NlaIV	GGNNCC	2 cut(s)	381, 506
NsbI	TGCGCA	1 cut(s)	437
NspI	RCATGY	2 cut(s)	187, 218
NspV	TTCGAA	1 cut(s)	65
PaeR7I	CTCGAG	1 cut(s)	422
PagI	TCATGA	1 cut(s)	354
PceI	AGGCCT	1 cut(s)	553
PctI	GAATGC	1 cut(s)	526
PfeI	GAWTC	2 cut(s)	30, 278
PkrI	GCNGC	4 cut(s)	264, 595, 632, 635
PshBI	ATTAAT	2 cut(s)	612, 645
PsiI	TTATAA	1 cut(s)	603
PspEI	GGTNACC	1 cut(s)	55
PspN4I	GGNNCC	2 cut(s)	381, 506
PspPI	GGNCC	1 cut(s)	683
PspXI	VCTCGAGB	1 cut(s)	422
PsuI	RGATCY	1 cut(s)	379
PvuII	CAGCTG	1 cut(s)	284
RsaI	GTAC	2 cut(s)	444, 547
RsaNI	GTAC	2 cut(s)	443, 546
RseI	CAYNNNNRTG	1 cut(s)	213
Rsr2I	CGGWCCG	1 cut(s)	683
RsrII	CGGWCCG	1 cut(s)	683
SaqAI	TTAA	2 cut(s)	612, 645
SatI	GCNGC	4 cut(s)	263, 594, 631, 634
Sau3AI	GATC	6 cut(s)	300, 343, 379, 408, 457, 655
Sau96I	GGNCC	1 cut(s)	683
SfaNI	GCATC	2 cut(s)	109, 684
Sfr274I	CTCGAG	1 cut(s)	422
SfuI	TTCGAA	1 cut(s)	65
SinI	GGWCC	1 cut(s)	683
SlaI	CTCGAG	1 cut(s)	422
SmiMI	CAYNNNNRTG	1 cut(s)	213
SmlI	CTYRAG	2 cut(s)	393, 422
SmoI	CTYRAG	2 cut(s)	393, 422
Sse9I	AATT	3 cut(s)	266, 642, 649
SseBI	AGGCCT	1 cut(s)	553
SsiI	CCGC	1 cut(s)	686
SspMI	CTAG	3 cut(s)	174, 311, 669
StuI	AGGCCT	1 cut(s)	553
TaaI	ACNGT	2 cut(s)	255, 327
TaiI	ACGT	1 cut(s)	73
TaqI	TCGA	5 cut(s)	33, 65, 73, 303, 423
TasI	AATT	3 cut(s)	266, 642, 649
TfiI	GAWTC	2 cut(s)	30, 278
Tru1I	TTAA	2 cut(s)	612, 645
Tru9I	TTAA	2 cut(s)	612, 645
TscAI	CASTG	1 cut(s)	696
TseI	GCWGC	4 cut(s)	262, 593, 630, 633
TspDTI	ATGAA	3 cut(s)	291, 338, 667
TspGWI	ACGGA	1 cut(s)	485
TspRI	CASTG	1 cut(s)	696
VpaK11BI	GGWCC	1 cut(s)	683
VspI	ATTAAT	2 cut(s)	612, 645
XceI	RCATGY	2 cut(s)	187, 218
XhoI	CTCGAG	1 cut(s)	422
XspI	CTAG	3 cut(s)	174, 311, 669

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.