Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000758

Physical Location & Seq

Genomic Coordinates Forward (+)

4289231 .. 4296335

Gene Structure 7105 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00282230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGGTGAGAGGGAAGATTCAGATGAAAAGAATAGAAAATGCGACAAGCAGGCAGGTAACCTTTTCGAAACGTCGAAATGGGTTGTTGAAGAAGGCTTATGAGCTTTCGGTTCTTTGCGATGCCGAAGTTGCAGTGATCATCTTTTCTCAGAATGGCAGGCTCTACGAGTTTTCCAGCTCTGACATGCAAAAGACTATAAACCAATACCATAAACATGCAAAAGGTGTGCAAACCAACACTATTGAAGTGGAACAGTGTATGCAGCAATTGAAGCATGAATCAGCTGACATGGCCAAGAAGATTGAGATCCTAGAAGCTTCTCAACGGAGGCTTTTGGGACATGACTTAGATTCTTGCTCTGCTCAAGAACTCAATCAGATCAGTAGCCAGCTCGACCGAAGCTTGTGCATTGTACGAGAGAGAAAGGCTCAGCTATTCATGAAGCAGATAGAACGACTAAAAGCAAAGGGGAGGCTCCTCTTAGAAGAGAATGTAAAACTACACACAGAGTGTGGTGCAAGGCGTTGTCAGAAACCTTTAATTCAAAAAAAGGAGTTGGGGCGGCAAGTTGTAACTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0007568 GO:0008150 GO:0009791 GO:0009838 GO:0009889 GO:0009908 GO:0009909 GO:0010150 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048437 GO:0048580 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080187 GO:0090567 GO:0090693 GO:0099402 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

193

Amino Acids

22.2

Weight (kDa)

9.67

Isoelectric Point (pI)

48.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	8e-28	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	87 - 170	3.2e-22	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000758)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165
fragaria_vesca	FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740
malus_domestica	MD00G1004400.v1.1 MD00G1004600.v1.1 MD01G1193300.v1.1 MD01G1193500.v1.1 MD01G1193600.v1.1
prunus_persica	Prupe.2G287500_v2.0.a1
pyrus_communis	pycom01g20400 pycom01g20410 pycom07g23970
rosa_chinensis	RchiOBHm_Chr1g0376251 RchiOBHm_Chr1g0376271 RchiOBHm_Chr1g0376291
rosa_laevigata	RLG00000026614 RLG00000026615 RLG00000026616
rosa_multiflora	Rmu_co8488767.1_g000001 Rmu_ssc0000116.1_g000059 Rmu_ssc0000116.1_g000060
rosa_roxburghii	Rroxscaffold_4G00282230 Rroxscaffold_4G00282240 Rroxscaffold_4G00282270
rosa_rugosa	Rorug01G0394900 Rorug01G0395000
rosa_samantha	Rh1AG406300 Rh1AG406400 Rh1BG370100 Rh1BG370400 Rh1CG383000 Rh1CG383100 Rh1CG383200 Rh1DG399900 Rh1DG400200
rosa_wichuraiana	Rw1G036050 Rw1G036060 Rw1G036070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	43
AciI	CCGC	1 cut(s)	562
AclWI	GGATC	1 cut(s)	301
AcoI	YGGCCR	1 cut(s)	291
AdeI	CACNNNGTG	1 cut(s)	510
AfaI	GTAC	1 cut(s)	414
AgsI	TTSAA	4 cut(s)	88, 245, 271, 545
AluBI	AGCT	7 cut(s)	103, 177, 284, 317, 391, 402, 433
AluI	AGCT	7 cut(s)	103, 177, 284, 317, 391, 402, 433
AlwI	GGATC	1 cut(s)	301
AoxI	GGCC	1 cut(s)	291
ApeKI	GCWGC	1 cut(s)	262
AsuHPI	GGTGA	1 cut(s)	16
AsuII	TTCGAA	1 cut(s)	65
BalI	TGGCCA	1 cut(s)	293
BbvI	GCAGC	1 cut(s)	274
BcgI	CGANNNNNNTGC	2 cut(s)	387, 421
BclI	TGATCA	1 cut(s)	135
BfaI	CTAG	1 cut(s)	311
BfuAI	ACCTGC	1 cut(s)	43
BisI	GCNGC	2 cut(s)	263, 563
BlpI	GCTNAGC	1 cut(s)	429
BlsI	GCNGC	2 cut(s)	264, 564
BmiI	GGNNCC	1 cut(s)	476
BmsI	GCATC	1 cut(s)	109
BplI	GAGNNNNNCTC	2 cut(s)	412, 444
Bpu1102I	GCTNAGC	1 cut(s)	429
Bpu14I	TTCGAA	1 cut(s)	65
BpuEI	CTTGAG	1 cut(s)	348
BsaBI	GATNNNNATC	1 cut(s)	305
Bse1I	ACTGG	1 cut(s)	580
Bse8I	GATNNNNATC	1 cut(s)	305
BseJI	GATNNNNATC	1 cut(s)	305
BseMII	CTCAG	2 cut(s)	161, 443
BseNI	ACTGG	1 cut(s)	580
BseRI	GAGGAG	1 cut(s)	467
BseXI	GCAGC	1 cut(s)	274
Bsh1285I	CGRYCG	1 cut(s)	397
BshFI	GGCC	1 cut(s)	293
BsiEI	CGRYCG	1 cut(s)	397
BslFI	GGGAC	1 cut(s)	351
BsmFI	GGGAC	1 cut(s)	351
BsnI	GGCC	1 cut(s)	293
Bsp119I	TTCGAA	1 cut(s)	65
Bsp143I	GATC	3 cut(s)	135, 306, 378
Bsp1720I	GCTNAGC	1 cut(s)	429
BspACI	CCGC	1 cut(s)	562
BspANI	GGCC	1 cut(s)	293
BspCNI	CTCAG	2 cut(s)	160, 442
BspHI	TCATGA	1 cut(s)	438
BspLI	GGNNCC	1 cut(s)	476
BspMI	ACCTGC	1 cut(s)	43
BspPI	GGATC	1 cut(s)	301
BspT104I	TTCGAA	1 cut(s)	65
BsrI	ACTGG	1 cut(s)	580
BssMI	GATC	3 cut(s)	135, 306, 378
Bst4CI	ACNGT	1 cut(s)	255
Bst6I	CTCTTC	1 cut(s)	480
BstBI	TTCGAA	1 cut(s)	65
BstC8I	GCNNGC	3 cut(s)	50, 158, 389
BstDEI	CTNAG	4 cut(s)	147, 346, 429, 481
BstEII	GGTNACC	1 cut(s)	55
BstKTI	GATC	3 cut(s)	138, 309, 381
BstMBI	GATC	3 cut(s)	135, 306, 378
BstMCI	CGRYCG	1 cut(s)	397
BstMWI	GCNNNNNNNGC	3 cut(s)	128, 271, 290
BstNSI	RCATGY	2 cut(s)	187, 218
BstPI	GGTNACC	1 cut(s)	55
BstV1I	GCAGC	1 cut(s)	274
BstX2I	RGATCY	1 cut(s)	306
BstYI	RGATCY	1 cut(s)	306
BsuRI	GGCC	1 cut(s)	293
BtgZI	GCGATG	1 cut(s)	132
BtsI	GCAGTG	1 cut(s)	138
BtsIMutI	CAGTG	2 cut(s)	138, 260
BveI	ACCTGC	1 cut(s)	43
Cac8I	GCNNGC	3 cut(s)	50, 158, 389
CciI	TCATGA	1 cut(s)	438
Csp6I	GTAC	1 cut(s)	413
CviAII	CATG	6 cut(s)	184, 215, 275, 289, 341, 439
CviQI	GTAC	1 cut(s)	413
DdeI	CTNAG	4 cut(s)	147, 346, 429, 481
DpnI	GATC	3 cut(s)	137, 308, 380
DpnII	GATC	3 cut(s)	135, 306, 378
DraIII	CACNNNGTG	1 cut(s)	510
EaeI	YGGCCR	1 cut(s)	291
Eam1104I	CTCTTC	1 cut(s)	480
EarI	CTCTTC	1 cut(s)	480
Eco91I	GGTNACC	1 cut(s)	55
EcoO65I	GGTNACC	1 cut(s)	55
FaeI	CATG	6 cut(s)	187, 218, 278, 292, 344, 442
FaqI	GGGAC	1 cut(s)	351
FatI	CATG	6 cut(s)	183, 214, 274, 288, 340, 438
FbaI	TGATCA	1 cut(s)	135
Fnu4HI	GCNGC	2 cut(s)	263, 563
Fsp4HI	GCNGC	2 cut(s)	263, 563
FspBI	CTAG	1 cut(s)	311
GluI	GCNGC	2 cut(s)	263, 563
HaeIII	GGCC	1 cut(s)	293
Hin1II	CATG	6 cut(s)	187, 218, 278, 292, 344, 442
HindIII	AAGCTT	2 cut(s)	315, 400
HinfI	GANTC	3 cut(s)	16, 278, 350
HphI	GGTGA	1 cut(s)	16
Hpy188I	TCNGA	5 cut(s)	21, 150, 181, 378, 531
Hpy188III	TCNNGA	2 cut(s)	365, 439
Hpy99I	CGWCG	1 cut(s)	75
HpyAV	CCTTC	1 cut(s)	85
HpyCH4III	ACNGT	1 cut(s)	255
HpyCH4IV	ACGT	1 cut(s)	70
HpyCH4V	TGCA	7 cut(s)	131, 187, 218, 229, 262, 408, 518
HpyF10VI	GCNNNNNNNGC	3 cut(s)	128, 271, 290
HpyF3I	CTNAG	4 cut(s)	147, 346, 429, 481
HpySE526I	ACGT	1 cut(s)	70
Hsp92II	CATG	6 cut(s)	187, 218, 278, 292, 344, 442
Ksp22I	TGATCA	1 cut(s)	135
Kzo9I	GATC	3 cut(s)	135, 306, 378
LmnI	GCTCC	1 cut(s)	480
LpnPI	CCDG	6 cut(s)	34, 38, 142, 187, 401, 561
Lsp1109I	GCAGC	1 cut(s)	274
LweI	GCATC	1 cut(s)	109
MaeI	CTAG	1 cut(s)	311
MaeII	ACGT	1 cut(s)	70
MaeIII	GTNAC	2 cut(s)	55, 571
MalI	GATC	3 cut(s)	137, 308, 380
MboI	GATC	3 cut(s)	135, 306, 378
MboII	GAAGA	4 cut(s)	25, 100, 310, 497
MfeI	CAATTG	1 cut(s)	266
MflI	RGATCY	1 cut(s)	306
MlsI	TGGCCA	1 cut(s)	293
MluCI	AATT	2 cut(s)	266, 540
MluNI	TGGCCA	1 cut(s)	293
MnlI	CCTC	3 cut(s)	321, 465, 488
Mox20I	TGGCCA	1 cut(s)	293
MscI	TGGCCA	1 cut(s)	293
MseI	TTAA	1 cut(s)	539
MslI	CAYNNNNRTG	1 cut(s)	213
Msp20I	TGGCCA	1 cut(s)	293
MspA1I	CMGCKG	1 cut(s)	284
MunI	CAATTG	1 cut(s)	266
MwoI	GCNNNNNNNGC	3 cut(s)	128, 271, 290
NdeII	GATC	3 cut(s)	135, 306, 378
NlaIII	CATG	6 cut(s)	187, 218, 278, 292, 344, 442
NlaIV	GGNNCC	1 cut(s)	476
NspI	RCATGY	2 cut(s)	187, 218
NspV	TTCGAA	1 cut(s)	65
PagI	TCATGA	1 cut(s)	438
PfeI	GAWTC	3 cut(s)	16, 278, 350
PkrI	GCNGC	2 cut(s)	264, 564
PspEI	GGTNACC	1 cut(s)	55
PspN4I	GGNNCC	1 cut(s)	476
PsuI	RGATCY	1 cut(s)	306
PvuII	CAGCTG	1 cut(s)	284
RsaI	GTAC	1 cut(s)	414
RsaNI	GTAC	1 cut(s)	413
RseI	CAYNNNNRTG	1 cut(s)	213
SaqAI	TTAA	1 cut(s)	539
SatI	GCNGC	2 cut(s)	263, 563
Sau3AI	GATC	3 cut(s)	135, 306, 378
SfaNI	GCATC	1 cut(s)	109
SfuI	TTCGAA	1 cut(s)	65
SmiMI	CAYNNNNRTG	1 cut(s)	213
SmlI	CTYRAG	1 cut(s)	363
SmoI	CTYRAG	1 cut(s)	363
Sse9I	AATT	2 cut(s)	266, 540
SsiI	CCGC	1 cut(s)	562
SspMI	CTAG	1 cut(s)	311
TaaI	ACNGT	1 cut(s)	255
TaiI	ACGT	1 cut(s)	73
TaqI	TCGA	3 cut(s)	65, 73, 393
TaqII	GACCGA	1 cut(s)	411
TasI	AATT	2 cut(s)	266, 540
TauI	GCSGC	1 cut(s)	565
TfiI	GAWTC	3 cut(s)	16, 278, 350
Tru1I	TTAA	1 cut(s)	539
Tru9I	TTAA	1 cut(s)	539
TscAI	CASTG	2 cut(s)	138, 260
TseI	GCWGC	1 cut(s)	262
TspDTI	ATGAA	4 cut(s)	38, 291, 427, 455
TspGWI	ACGGA	1 cut(s)	340
TspRI	CASTG	2 cut(s)	138, 260
XceI	RCATGY	2 cut(s)	187, 218
XspI	CTAG	1 cut(s)	311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.