Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0000758

Physical Location & Seq

Genomic Coordinates Reverse (-)

29244592 .. 29249892

Gene Structure 5301 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1193500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGAAAAGAATTGAGAATGCCACAAGCCGGCAAGTGACCTTCACCAAACGTCGAAACGGCTTGTTAAAGAAAGCTTATGAACTTTCGGTTCTTTGCGATGCAGAAGTTGCAGTCATCATCTTCTCCCAGAAAGACAAGCTCTATGAGTTCTGCAGCTCTGACATGCAAGAGACTCTAACACGATACCATAACTATGCAAAAGATGAGCAAACCAACAAGGTTGAAGTGGAACAACATGTGCAGCACTTGAAGCATGAATCAGCTATTATGACCAAGAAGATAGAGATCCTAGAAGCTTCTCAACGGAAGCTTTTGGGAAATGATTTGGATTCTTGCTTTGTTGAAGAACTCCAGGAGATCAGTAGCCAGCTGGAACGAAGTTTACGCAGCATAAGAGAGAGAAAGGCTCAATTATTCATGGAGCAGATGGAAAATCTAAAGGCAAAGGAGACGCTCCTCTTACAAGAGAACGCAAAATTACGCGAAGAGAGTGGTGCGAAGCTGTTGATGGAGCATTCAGCTCAAGAAAAAAGAGCTTCTGCTTCTGTAAGCTATGAAAAAGCAGGAGCTTCTGCTTCTGCTTCTGTAAACTACTGGAGCCAAAGTATCATGAGTTCTGAGGTGGAGACCGAATTGCTCATTGGACCGCCAATAATGCGCGCTGTTGATCGCATCGCAGTCTTAAGCAACATACATCAGATAAATAATAATGCTTGTCAATCATCTCTGAAGACAATCCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0007568 GO:0008150 GO:0009791 GO:0009838 GO:0009889 GO:0009908 GO:0009909 GO:0010150 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048437 GO:0048580 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080187 GO:0090567 GO:0090693 GO:0099402 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

248

Amino Acids

28.15

Weight (kDa)

6.62

Isoelectric Point (pI)

55.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	3 - 50	3.9e-26	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	77 - 163	1.8e-22	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000758)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165
fragaria_vesca	FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740
malus_domestica	MD00G1004400.v1.1 MD00G1004600.v1.1 MD01G1193300.v1.1 MD01G1193500.v1.1 MD01G1193600.v1.1
prunus_persica	Prupe.2G287500_v2.0.a1
pyrus_communis	pycom01g20400 pycom01g20410 pycom07g23970
rosa_chinensis	RchiOBHm_Chr1g0376251 RchiOBHm_Chr1g0376271 RchiOBHm_Chr1g0376291
rosa_laevigata	RLG00000026614 RLG00000026615 RLG00000026616
rosa_multiflora	Rmu_co8488767.1_g000001 Rmu_ssc0000116.1_g000059 Rmu_ssc0000116.1_g000060
rosa_roxburghii	Rroxscaffold_4G00282230 Rroxscaffold_4G00282240 Rroxscaffold_4G00282270
rosa_rugosa	Rorug01G0394900 Rorug01G0395000
rosa_samantha	Rh1AG406300 Rh1AG406400 Rh1BG370100 Rh1BG370400 Rh1CG383000 Rh1CG383100 Rh1CG383200 Rh1DG399900 Rh1DG400200
rosa_wichuraiana	Rw1G036050 Rw1G036060 Rw1G036070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	483, 660
AciI	CCGC	1 cut(s)	647
AclWI	GGATC	1 cut(s)	280
AfiI	CCNNNNNNNGG	1 cut(s)	27
AflII	CTTAAG	1 cut(s)	682
AflIII	ACRYGT	1 cut(s)	235
AgsI	TTSAA	3 cut(s)	224, 250, 344
AjnI	CCWGG	1 cut(s)	351
AjuI	GAANNNNNNNTTGG	2 cut(s)	624, 656
Alw26I	GTCTC	3 cut(s)	164, 443, 620
AlwI	GGATC	1 cut(s)	280
ApeKI	GCWGC	3 cut(s)	153, 241, 387
AspLEI	GCGC	2 cut(s)	660, 662
AspS9I	GGNCC	1 cut(s)	644
AsuHPI	GGTGA	1 cut(s)	34
AvaII	GGWCC	1 cut(s)	644
BbsI	GAAGAC	1 cut(s)	737
BbvI	GCAGC	3 cut(s)	165, 253, 399
BccI	CCATC	2 cut(s)	421, 502
BceAI	ACGGC	1 cut(s)	73
BciT130I	CCWGG	1 cut(s)	353
BcoDI	GTCTC	3 cut(s)	164, 443, 620
BfaI	CTAG	1 cut(s)	290
BfmI	CTRYAG	1 cut(s)	151
BfrI	CTTAAG	1 cut(s)	682
BisI	GCNGC	3 cut(s)	154, 242, 388
BlsI	GCNGC	3 cut(s)	155, 243, 389
Bme1390I	CCNGG	1 cut(s)	353
Bme18I	GGWCC	1 cut(s)	644
BmgT120I	GGNCC	1 cut(s)	644
BmiI	GGNNCC	1 cut(s)	599
BmrFI	CCNGG	1 cut(s)	353
BmsI	GCATC	2 cut(s)	88, 681
BpiI	GAAGAC	1 cut(s)	737
BplI	GAGNNNNNCTC	2 cut(s)	391, 423
BpmI	CTGGAG	2 cut(s)	335, 616
BpuEI	CTTGAG	1 cut(s)	507
BsaBI	GATNNNNATC	1 cut(s)	284
BsaI	GGTCTC	1 cut(s)	620
BsaXI	ACNNNNNCTCC	2 cut(s)	589, 619
Bsc4I	CCNNNNNNNGG	1 cut(s)	27
Bse118I	RCCGGY	1 cut(s)	27
Bse1I	ACTGG	1 cut(s)	599
Bse8I	GATNNNNATC	1 cut(s)	284
BseBI	CCWGG	1 cut(s)	353
BseJI	GATNNNNATC	1 cut(s)	284
BseLI	CCNNNNNNNGG	1 cut(s)	27
BseMII	CTCAG	1 cut(s)	609
BseNI	ACTGG	1 cut(s)	599
BsePI	GCGCGC	1 cut(s)	658
BseRI	GAGGAG	1 cut(s)	446
BseXI	GCAGC	3 cut(s)	165, 253, 399
BsgI	GTGCAG	1 cut(s)	260
Bsh1236I	CGCG	2 cut(s)	483, 660
BsiSI	CCGG	1 cut(s)	28
BslI	CCNNNNNNNGG	1 cut(s)	27
BsmAI	GTCTC	3 cut(s)	164, 443, 620
BsmBI	CGTCTC	1 cut(s)	443
BsmI	GAATGC	2 cut(s)	22, 514
Bso31I	GGTCTC	1 cut(s)	620
Bsp143I	GATC	3 cut(s)	285, 357, 667
BspACI	CCGC	1 cut(s)	647
BspCNI	CTCAG	1 cut(s)	610
BspFNI	CGCG	2 cut(s)	483, 660
BspHI	TCATGA	1 cut(s)	609
BspLI	GGNNCC	1 cut(s)	599
BspMAI	CTGCAG	1 cut(s)	155
BspPI	GGATC	1 cut(s)	280
BspTI	CTTAAG	1 cut(s)	682
BspTNI	GGTCTC	1 cut(s)	620
BsrFI	RCCGGY	1 cut(s)	27
BsrI	ACTGG	1 cut(s)	599
BssAI	RCCGGY	1 cut(s)	27
BssHII	GCGCGC	1 cut(s)	658
BssMI	GATC	3 cut(s)	285, 357, 667
Bst2UI	CCWGG	1 cut(s)	353
Bst6I	CTCTTC	1 cut(s)	480
BstAFI	CTTAAG	1 cut(s)	682
BstAPI	GCANNNNNTGC	1 cut(s)	107
BstC8I	GCNNGC	3 cut(s)	29, 368, 660
BstDEI	CTNAG	1 cut(s)	618
BstFNI	CGCG	2 cut(s)	483, 660
BstHHI	GCGC	2 cut(s)	660, 662
BstKTI	GATC	3 cut(s)	288, 360, 670
BstMAI	GTCTC	3 cut(s)	164, 443, 620
BstMBI	GATC	3 cut(s)	285, 357, 667
BstMWI	GCNNNNNNNGC	3 cut(s)	107, 250, 655
BstNI	CCWGG	1 cut(s)	353
BstNSI	RCATGY	2 cut(s)	166, 239
BstSCI	CCNGG	1 cut(s)	351
BstSFI	CTRYAG	1 cut(s)	151
BstUI	CGCG	2 cut(s)	483, 660
BstV1I	GCAGC	3 cut(s)	165, 253, 399
BstV2I	GAAGAC	1 cut(s)	737
BstX2I	RGATCY	1 cut(s)	285
BstYI	RGATCY	1 cut(s)	285
BtgZI	GCGATG	2 cut(s)	111, 658
Cac8I	GCNNGC	3 cut(s)	29, 368, 660
CciI	TCATGA	1 cut(s)	609
CfoI	GCGC	2 cut(s)	660, 662
Cfr10I	RCCGGY	1 cut(s)	27
Cfr13I	GGNCC	1 cut(s)	644
CseI	GACGC	1 cut(s)	460
CviAII	CATG	5 cut(s)	163, 236, 254, 418, 610
DdeI	CTNAG	1 cut(s)	618
DpnI	GATC	3 cut(s)	287, 359, 669
DpnII	GATC	3 cut(s)	285, 357, 667
Eam1104I	CTCTTC	1 cut(s)	480
EarI	CTCTTC	1 cut(s)	480
Eco31I	GGTCTC	1 cut(s)	620
Eco47I	GGWCC	1 cut(s)	644
EcoRII	CCWGG	1 cut(s)	351
Esp3I	CGTCTC	1 cut(s)	443
FaeI	CATG	5 cut(s)	166, 239, 257, 421, 613
FatI	CATG	5 cut(s)	162, 235, 253, 417, 609
Fnu4HI	GCNGC	3 cut(s)	154, 242, 388
Fsp4HI	GCNGC	3 cut(s)	154, 242, 388
FspBI	CTAG	1 cut(s)	290
GlaI	GCGC	2 cut(s)	659, 661
GluI	GCNGC	3 cut(s)	154, 242, 388
GsuI	CTGGAG	2 cut(s)	335, 616
HapII	CCGG	1 cut(s)	28
HgaI	GACGC	1 cut(s)	460
HhaI	GCGC	2 cut(s)	660, 662
Hin1II	CATG	5 cut(s)	166, 239, 257, 421, 613
Hin6I	GCGC	2 cut(s)	658, 660
HinP1I	GCGC	2 cut(s)	658, 660
HindIII	AAGCTT	3 cut(s)	72, 294, 308
HinfI	GANTC	3 cut(s)	172, 257, 329
HpaII	CCGG	1 cut(s)	28
HphI	GGTGA	1 cut(s)	34
Hpy166II	GTNNAC	2 cut(s)	383, 589
Hpy188I	TCNGA	4 cut(s)	160, 619, 699, 729
Hpy188III	TCNNGA	2 cut(s)	524, 610
Hpy8I	GTNNAC	2 cut(s)	383, 589
Hpy99I	CGWCG	1 cut(s)	54
HpyAV	CCTTC	1 cut(s)	49
HpyCH4IV	ACGT	1 cut(s)	49
HpyCH4V	TGCA	6 cut(s)	101, 110, 153, 166, 197, 241
HpyF10VI	GCNNNNNNNGC	3 cut(s)	107, 250, 655
HpyF3I	CTNAG	1 cut(s)	618
HpySE526I	ACGT	1 cut(s)	49
Hsp92II	CATG	5 cut(s)	166, 239, 257, 421, 613
HspAI	GCGC	2 cut(s)	658, 660
KroI	GCCGGC	1 cut(s)	27
KroNI	GCCGGC	1 cut(s)	29
Kzo9I	GATC	3 cut(s)	285, 357, 667
LmnI	GCTCC	5 cut(s)	421, 459, 511, 566, 597
LpnPI	CCDG	8 cut(s)	41, 140, 338, 356, 365, 380, 549, 580
Lsp1109I	GCAGC	3 cut(s)	165, 253, 399
LweI	GCATC	2 cut(s)	88, 681
MaeI	CTAG	1 cut(s)	290
MaeII	ACGT	1 cut(s)	49
MaeIII	GTNAC	1 cut(s)	34
MalI	GATC	3 cut(s)	287, 359, 669
MboI	GATC	3 cut(s)	285, 357, 667
MboII	GAAGA	5 cut(s)	112, 289, 356, 497, 742
MflI	RGATCY	1 cut(s)	285
MluCI	AATT	4 cut(s)	9, 410, 476, 632
MlyI	GAGTC	1 cut(s)	166
MnlI	CCTC	2 cut(s)	467, 613
MroNI	GCCGGC	1 cut(s)	27
MseI	TTAA	2 cut(s)	65, 683
MslI	CAYNNNNRTG	1 cut(s)	192
MspA1I	CMGCKG	1 cut(s)	370
MspCI	CTTAAG	1 cut(s)	682
MspI	CCGG	1 cut(s)	28
MspR9I	CCNGG	1 cut(s)	353
Mva1269I	GAATGC	2 cut(s)	22, 514
MvaI	CCWGG	1 cut(s)	353
MvnI	CGCG	2 cut(s)	483, 660
MwoI	GCNNNNNNNGC	3 cut(s)	107, 250, 655
NaeI	GCCGGC	1 cut(s)	29
NdeII	GATC	3 cut(s)	285, 357, 667
NgoMIV	GCCGGC	1 cut(s)	27
NlaIII	CATG	5 cut(s)	166, 239, 257, 421, 613
NlaIV	GGNNCC	1 cut(s)	599
NmuCI	GTSAC	1 cut(s)	34
NspI	RCATGY	2 cut(s)	166, 239
PagI	TCATGA	1 cut(s)	609
PauI	GCGCGC	1 cut(s)	658
PciI	ACATGT	1 cut(s)	235
PctI	GAATGC	2 cut(s)	22, 514
PdiI	GCCGGC	1 cut(s)	29
PfeI	GAWTC	2 cut(s)	257, 329
PfoI	TCCNGGA	1 cut(s)	351
PkrI	GCNGC	3 cut(s)	155, 243, 389
PleI	GAGTC	1 cut(s)	166
PpsI	GAGTC	1 cut(s)	166
PscI	ACATGT	1 cut(s)	235
Psp6I	CCWGG	1 cut(s)	351
PspGI	CCWGG	1 cut(s)	351
PspN4I	GGNNCC	1 cut(s)	599
PspPI	GGNCC	1 cut(s)	644
PsrI	GAACNNNNNNTAC	4 cut(s)	366, 398, 598, 630
PstI	CTGCAG	1 cut(s)	155
PsuI	RGATCY	1 cut(s)	285
PteI	GCGCGC	1 cut(s)	658
PvuII	CAGCTG	1 cut(s)	370
RseI	CAYNNNNRTG	1 cut(s)	192
SaqAI	TTAA	2 cut(s)	65, 683
SatI	GCNGC	3 cut(s)	154, 242, 388
Sau3AI	GATC	3 cut(s)	285, 357, 667
Sau96I	GGNCC	1 cut(s)	644
SchI	GAGTC	1 cut(s)	166
ScrFI	CCNGG	1 cut(s)	353
SfaNI	GCATC	2 cut(s)	88, 681
SfcI	CTRYAG	1 cut(s)	151
SinI	GGWCC	1 cut(s)	644
SmiMI	CAYNNNNRTG	1 cut(s)	192
SmlI	CTYRAG	2 cut(s)	522, 682
SmoI	CTYRAG	2 cut(s)	522, 682
Sse9I	AATT	4 cut(s)	9, 410, 476, 632
SsiI	CCGC	1 cut(s)	647
SspMI	CTAG	1 cut(s)	290
StyD4I	CCNGG	1 cut(s)	351
TaiI	ACGT	1 cut(s)	52
TaqI	TCGA	1 cut(s)	52
TaqII	GACCGA	1 cut(s)	644
TasI	AATT	4 cut(s)	9, 410, 476, 632
TfiI	GAWTC	2 cut(s)	257, 329
Tru1I	TTAA	2 cut(s)	65, 683
Tru9I	TTAA	2 cut(s)	65, 683
TseFI	GTSAC	1 cut(s)	34
TseI	GCWGC	3 cut(s)	153, 241, 387
Tsp45I	GTSAC	1 cut(s)	34
TspDTI	ATGAA	5 cut(s)	17, 93, 270, 406, 570
TspGWI	ACGGA	1 cut(s)	319
Vha464I	CTTAAG	1 cut(s)	682
VpaK11BI	GGWCC	1 cut(s)	644
XceI	RCATGY	2 cut(s)	166, 239
XspI	CTAG	1 cut(s)	290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.