Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8488767.1

Orthogroup ID

OG0000758

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1233

Gene Structure 1233 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8488767.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

caattgaagcatgaatcagctgacatggccaagaagattgagaccctagaagcttctcaacggaggcttttgggacatgacttggatccttgctctgctcaagaagtcaatcagatgagtagccagctcgagcgaagcttgcgcaaagtacgagagagaaaggatcagctattaacggagcagatagaacgactaaaagcaaaggagaggttcctcttagaagagaatgcaaaactacacacacagtgtggtgcaaggccttgtcagaaacctttagttcaagaaaaaggagttggggcagcaagttataactggatgaatagtagtcaaagtagcggcagccaaacaattaataattcagatcaggtagagactagattgttcatcggaccgccagtgatgcgctgtgaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0007568 GO:0008150 GO:0009791 GO:0009838 GO:0009889 GO:0009908 GO:0009909 GO:0010150 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048437 GO:0048580 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080187 GO:0090567 GO:0090693 GO:0099402 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

137

Amino Acids

15.59

Weight (kDa)

8.42

Isoelectric Point (pI)

45.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000758)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165
fragaria_vesca	FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740
malus_domestica	MD00G1004400.v1.1 MD00G1004600.v1.1 MD01G1193300.v1.1 MD01G1193500.v1.1 MD01G1193600.v1.1
prunus_persica	Prupe.2G287500_v2.0.a1
pyrus_communis	pycom01g20400 pycom01g20410 pycom07g23970
rosa_chinensis	RchiOBHm_Chr1g0376251 RchiOBHm_Chr1g0376271 RchiOBHm_Chr1g0376291
rosa_laevigata	RLG00000026614 RLG00000026615 RLG00000026616
rosa_multiflora	Rmu_co8488767.1_g000001 Rmu_ssc0000116.1_g000059 Rmu_ssc0000116.1_g000060
rosa_roxburghii	Rroxscaffold_4G00282230 Rroxscaffold_4G00282240 Rroxscaffold_4G00282270
rosa_rugosa	Rorug01G0394900 Rorug01G0395000
rosa_samantha	Rh1AG406300 Rh1AG406400 Rh1BG370100 Rh1BG370400 Rh1CG383000 Rh1CG383100 Rh1CG383200 Rh1DG399900 Rh1DG400200
rosa_wichuraiana	Rw1G036050 Rw1G036060 Rw1G036070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	309
Acc16I	TGCGCA	1 cut(s)	143
AciI	CCGC	2 cut(s)	336, 392
AclWI	GGATC	3 cut(s)	80, 93, 171
AcoI	YGGCCR	1 cut(s)	27
AdeI	CACNNNGTG	2 cut(s)	246, 248
AfaI	GTAC	1 cut(s)	150
AgsI	TTSAA	2 cut(s)	7, 281
AjuI	GAANNNNNNNTTGG	2 cut(s)	276, 308
AluBI	AGCT	5 cut(s)	20, 53, 127, 138, 169
AluI	AGCT	5 cut(s)	20, 53, 127, 138, 169
Alw26I	GTCTC	2 cut(s)	35, 365
AlwI	GGATC	3 cut(s)	80, 93, 171
Ama87I	CYCGRG	1 cut(s)	128
AoxI	GGCC	2 cut(s)	27, 257
ApeKI	GCWGC	2 cut(s)	299, 339
AseI	ATTAAT	1 cut(s)	351
AspLEI	GCGC	2 cut(s)	144, 405
AspS9I	GGNCC	1 cut(s)	389
AvaI	CYCGRG	1 cut(s)	128
AvaII	GGWCC	1 cut(s)	389
BalI	TGGCCA	1 cut(s)	29
BamHI	GGATCC	1 cut(s)	85
BbvI	GCAGC	2 cut(s)	311, 351
BcoDI	GTCTC	2 cut(s)	35, 365
BfaI	CTAG	2 cut(s)	47, 375
BisI	GCNGC	3 cut(s)	300, 337, 340
BlsI	GCNGC	3 cut(s)	301, 338, 341
Bme18I	GGWCC	1 cut(s)	389
BmeT110I	CYCGRG	1 cut(s)	128
BmgT120I	GGNCC	1 cut(s)	389
BmiI	GGNNCC	2 cut(s)	87, 212
BmsI	GCATC	1 cut(s)	390
BpuEI	CTTGAG	1 cut(s)	84
BsaI	GGTCTC	1 cut(s)	35
Bse1I	ACTGG	2 cut(s)	317, 395
BseGI	GGATG	1 cut(s)	321
BseNI	ACTGG	2 cut(s)	317, 395
BseXI	GCAGC	2 cut(s)	311, 351
BshFI	GGCC	2 cut(s)	29, 259
BsiHKCI	CYCGRG	1 cut(s)	128
BslFI	GGGAC	1 cut(s)	87
BsmAI	GTCTC	2 cut(s)	35, 365
BsmFI	GGGAC	1 cut(s)	87
BsmI	GAATGC	1 cut(s)	232
BsnI	GGCC	2 cut(s)	29, 259
Bso31I	GGTCTC	1 cut(s)	35
BsoBI	CYCGRG	1 cut(s)	128
Bsp143I	GATC	3 cut(s)	85, 163, 361
BspACI	CCGC	2 cut(s)	336, 392
BspANI	GGCC	2 cut(s)	29, 259
BspLI	GGNNCC	2 cut(s)	87, 212
BspPI	GGATC	3 cut(s)	80, 93, 171
BspTNI	GGTCTC	1 cut(s)	35
BsrI	ACTGG	2 cut(s)	317, 395
BssMI	GATC	3 cut(s)	85, 163, 361
Bst4CI	ACNGT	1 cut(s)	246
Bst6I	CTCTTC	1 cut(s)	216
BstC8I	GCNNGC	2 cut(s)	125, 140
BstDEI	CTNAG	1 cut(s)	217
BstF5I	GGATG	1 cut(s)	321
BstHHI	GCGC	2 cut(s)	144, 405
BstKTI	GATC	3 cut(s)	88, 166, 364
BstMAI	GTCTC	2 cut(s)	35, 365
BstMBI	GATC	3 cut(s)	85, 163, 361
BstMWI	GCNNNNNNNGC	3 cut(s)	26, 139, 400
BstV1I	GCAGC	2 cut(s)	311, 351
BstX2I	RGATCY	1 cut(s)	85
BstYI	RGATCY	1 cut(s)	85
BsuRI	GGCC	2 cut(s)	29, 259
BtsCI	GGATG	1 cut(s)	321
BtsIMutI	CAGTG	2 cut(s)	251, 402
Cac8I	GCNNGC	2 cut(s)	125, 140
CfoI	GCGC	2 cut(s)	144, 405
Cfr13I	GGNCC	1 cut(s)	389
CpoI	CGGWCCG	1 cut(s)	389
Csp6I	GTAC	1 cut(s)	149
CspI	CGGWCCG	1 cut(s)	389
CviAII	CATG	3 cut(s)	11, 25, 77
CviQI	GTAC	1 cut(s)	149
DdeI	CTNAG	1 cut(s)	217
DpnI	GATC	3 cut(s)	87, 165, 363
DpnII	GATC	3 cut(s)	85, 163, 361
DraIII	CACNNNGTG	2 cut(s)	246, 248
EaeI	YGGCCR	1 cut(s)	27
Eam1104I	CTCTTC	1 cut(s)	216
EarI	CTCTTC	1 cut(s)	216
Eco147I	AGGCCT	1 cut(s)	259
Eco31I	GGTCTC	1 cut(s)	35
Eco47I	GGWCC	1 cut(s)	389
Eco88I	CYCGRG	1 cut(s)	128
FaeI	CATG	3 cut(s)	14, 28, 80
FaiI	YATR	4 cut(s)	12, 26, 78, 309
FaqI	GGGAC	1 cut(s)	87
FatI	CATG	3 cut(s)	10, 24, 76
Fnu4HI	GCNGC	3 cut(s)	300, 337, 340
FokI	GGATG	1 cut(s)	328
Fsp4HI	GCNGC	3 cut(s)	300, 337, 340
FspBI	CTAG	2 cut(s)	47, 375
FspI	TGCGCA	1 cut(s)	143
GlaI	GCGC	2 cut(s)	143, 404
GluI	GCNGC	3 cut(s)	300, 337, 340
HaeIII	GGCC	2 cut(s)	29, 259
HhaI	GCGC	2 cut(s)	144, 405
Hin1II	CATG	3 cut(s)	14, 28, 80
Hin6I	GCGC	2 cut(s)	142, 403
HinP1I	GCGC	2 cut(s)	142, 403
HindIII	AAGCTT	2 cut(s)	51, 136
HinfI	GANTC	1 cut(s)	14
Hpy188I	TCNGA	4 cut(s)	114, 267, 361, 389
Hpy188III	TCNNGA	2 cut(s)	101, 281
HpyCH4III	ACNGT	1 cut(s)	246
HpyCH4V	TGCA	2 cut(s)	230, 254
HpyF10VI	GCNNNNNNNGC	3 cut(s)	26, 139, 400
HpyF3I	CTNAG	1 cut(s)	217
Hsp92II	CATG	3 cut(s)	14, 28, 80
HspAI	GCGC	2 cut(s)	142, 403
Kzo9I	GATC	3 cut(s)	85, 163, 361
LmnI	GCTCC	1 cut(s)	178
LpnPI	CCDG	4 cut(s)	137, 298, 350, 408
Lsp1109I	GCAGC	2 cut(s)	311, 351
LweI	GCATC	1 cut(s)	390
MaeI	CTAG	2 cut(s)	47, 375
MalI	GATC	3 cut(s)	87, 165, 363
MboI	GATC	3 cut(s)	85, 163, 361
MboII	GAAGA	2 cut(s)	46, 233
MfeI	CAATTG	1 cut(s)	2
MflI	RGATCY	1 cut(s)	85
MlsI	TGGCCA	1 cut(s)	29
MluCI	AATT	3 cut(s)	2, 348, 355
MluNI	TGGCCA	1 cut(s)	29
MnlI	CCTC	3 cut(s)	57, 201, 224
Mox20I	TGGCCA	1 cut(s)	29
MscI	TGGCCA	1 cut(s)	29
MseI	TTAA	2 cut(s)	173, 351
Msp20I	TGGCCA	1 cut(s)	29
MspA1I	CMGCKG	1 cut(s)	20
MunI	CAATTG	1 cut(s)	2
Mva1269I	GAATGC	1 cut(s)	232
MwoI	GCNNNNNNNGC	3 cut(s)	26, 139, 400
NdeII	GATC	3 cut(s)	85, 163, 361
NlaIII	CATG	3 cut(s)	14, 28, 80
NlaIV	GGNNCC	2 cut(s)	87, 212
NsbI	TGCGCA	1 cut(s)	143
PaeR7I	CTCGAG	1 cut(s)	128
PceI	AGGCCT	1 cut(s)	259
PctI	GAATGC	1 cut(s)	232
PfeI	GAWTC	1 cut(s)	14
PkrI	GCNGC	3 cut(s)	301, 338, 341
PshBI	ATTAAT	1 cut(s)	351
PsiI	TTATAA	1 cut(s)	309
PspN4I	GGNNCC	2 cut(s)	87, 212
PspPI	GGNCC	1 cut(s)	389
PspXI	VCTCGAGB	1 cut(s)	128
PsuI	RGATCY	1 cut(s)	85
PvuII	CAGCTG	1 cut(s)	20
RsaI	GTAC	1 cut(s)	150
RsaNI	GTAC	1 cut(s)	149
Rsr2I	CGGWCCG	1 cut(s)	389
RsrII	CGGWCCG	1 cut(s)	389
SaqAI	TTAA	2 cut(s)	173, 351
SatI	GCNGC	3 cut(s)	300, 337, 340
Sau3AI	GATC	3 cut(s)	85, 163, 361
Sau96I	GGNCC	1 cut(s)	389
SetI	ASST	8 cut(s)	22, 55, 129, 140, 171, 212, 274, 369
SfaNI	GCATC	1 cut(s)	390
Sfr274I	CTCGAG	1 cut(s)	128
SinI	GGWCC	1 cut(s)	389
SlaI	CTCGAG	1 cut(s)	128
SmlI	CTYRAG	2 cut(s)	99, 128
SmoI	CTYRAG	2 cut(s)	99, 128
Sse9I	AATT	3 cut(s)	2, 348, 355
SseBI	AGGCCT	1 cut(s)	259
SsiI	CCGC	2 cut(s)	336, 392
SspMI	CTAG	2 cut(s)	47, 375
StuI	AGGCCT	1 cut(s)	259
TaaI	ACNGT	1 cut(s)	246
TaqI	TCGA	1 cut(s)	129
TasI	AATT	3 cut(s)	2, 348, 355
TauI	GCSGC	1 cut(s)	339
TfiI	GAWTC	1 cut(s)	14
Tru1I	TTAA	2 cut(s)	173, 351
Tru9I	TTAA	2 cut(s)	173, 351
TscAI	CASTG	2 cut(s)	251, 402
TseI	GCWGC	2 cut(s)	299, 339
TspDTI	ATGAA	3 cut(s)	27, 332, 373
TspGWI	ACGGA	2 cut(s)	76, 191
TspRI	CASTG	2 cut(s)	251, 402
VpaK11BI	GGWCC	1 cut(s)	389
VspI	ATTAAT	1 cut(s)	351
XhoI	CTCGAG	1 cut(s)	128
XspI	CTAG	2 cut(s)	47, 375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.