Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0000758

Physical Location & Seq

Genomic Coordinates Forward (+)

4266915 .. 4271312

Gene Structure 4398 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026616

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGGTGAGAGGCAAGATTGAGGTGAAAAGAATCGAAAATGCGACAAGCAGGCAGGTAACCTTTTCGAAACGTCGAAACGGGCTGTTGAAGAAGGCTTTTGAGCTTTCGGTTCTTTGCGATGCCGAAGTTGCAGTCATCATCTTTTCTCCGAAGGGCAGGCTCTATGAGTTTTCTAGCTCTGACATGCAAAAGACTATAAAAAAATACCATAAACATGCAAAAGGTGCGCTAACCAACACTACTGAAGTGGAACAGTACATGCAGCAATTGAAGCATGAATCAGATGACATGGCCAAGAAGATCGAGACCCTAGAAGCTTCTCTACGGAGGCTTTTGGGACATGACTTGGATCCTTGCTCTGCCGAAGAAGTCAATCAGATGAGTAGCCAGCTCGAGCGAAGCTTGCGCATTGTACGAGAGAGAAAGGATCAGCTATTCAAGGAGCAGATAGAACGACTAAAAGCAAAGGAGAGACTCCTCTTAGAAGAGAATGCAAAACTACACACAGAGTGTGGTGCAAGGCCTTGTCAGAAATCTTTAGTTCAAAAAGGAGTTGGGGCAGCAAGTTATAACTGGATGAATAGTAGTCAAAGTAGCAGCAGCCAAACAATTAATAATTCAGATCAGAAGACCAGAAGTCCTGCCAGTTGCATGTATCTGATTAATAACTGCAGACTGGAAACTGAAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0007568 GO:0008150 GO:0009791 GO:0009838 GO:0009889 GO:0009908 GO:0009909 GO:0010150 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048437 GO:0048580 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080187 GO:0090567 GO:0090693 GO:0099402 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

231

Amino Acids

26.32

Weight (kDa)

9.16

Isoelectric Point (pI)

59.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	3e-27	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	86 - 170	1.6e-22	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000758)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165
fragaria_vesca	FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740
malus_domestica	MD00G1004400.v1.1 MD00G1004600.v1.1 MD01G1193300.v1.1 MD01G1193500.v1.1 MD01G1193600.v1.1
prunus_persica	Prupe.2G287500_v2.0.a1
pyrus_communis	pycom01g20400 pycom01g20410 pycom07g23970
rosa_chinensis	RchiOBHm_Chr1g0376251 RchiOBHm_Chr1g0376271 RchiOBHm_Chr1g0376291
rosa_laevigata	RLG00000026614 RLG00000026615 RLG00000026616
rosa_multiflora	Rmu_co8488767.1_g000001 Rmu_ssc0000116.1_g000059 Rmu_ssc0000116.1_g000060
rosa_roxburghii	Rroxscaffold_4G00282230 Rroxscaffold_4G00282240 Rroxscaffold_4G00282270
rosa_rugosa	Rorug01G0394900 Rorug01G0395000
rosa_samantha	Rh1AG406300 Rh1AG406400 Rh1BG370100 Rh1BG370400 Rh1CG383000 Rh1CG383100 Rh1CG383200 Rh1DG399900 Rh1DG400200
rosa_wichuraiana	Rw1G036050 Rw1G036060 Rw1G036070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	570
Acc16I	TGCGCA	1 cut(s)	407
Acc36I	ACCTGC	1 cut(s)	43
AclWI	GGATC	3 cut(s)	344, 357, 435
AcoI	YGGCCR	1 cut(s)	291
AcuI	CTGAAG	1 cut(s)	264
AdeI	CACNNNGTG	1 cut(s)	510
AfaI	GTAC	2 cut(s)	257, 414
AgsI	TTSAA	4 cut(s)	88, 271, 439, 545
AhdI	GACNNNNNGTC	1 cut(s)	636
AluBI	AGCT	6 cut(s)	103, 177, 317, 391, 402, 433
AluI	AGCT	6 cut(s)	103, 177, 317, 391, 402, 433
Alw26I	GTCTC	2 cut(s)	299, 466
AlwI	GGATC	3 cut(s)	344, 357, 435
Ama87I	CYCGRG	1 cut(s)	392
AoxI	GGCC	2 cut(s)	291, 521
ApeKI	GCWGC	4 cut(s)	262, 560, 597, 600
ArsI	GACNNNNNNTTYG	2 cut(s)	117, 149
AseI	ATTAAT	2 cut(s)	612, 663
AspLEI	GCGC	2 cut(s)	229, 408
AsuHPI	GGTGA	2 cut(s)	16, 34
AsuII	TTCGAA	1 cut(s)	65
AvaI	CYCGRG	1 cut(s)	392
BalI	TGGCCA	1 cut(s)	293
BamHI	GGATCC	1 cut(s)	349
BarI	GAAGNNNNNNTAC	2 cut(s)	306, 338
BbsI	GAAGAC	1 cut(s)	635
BbvI	GCAGC	4 cut(s)	274, 572, 609, 612
BcoDI	GTCTC	2 cut(s)	299, 466
BfaI	CTAG	2 cut(s)	174, 311
BfmI	CTRYAG	1 cut(s)	670
BfuAI	ACCTGC	1 cut(s)	43
BisI	GCNGC	4 cut(s)	263, 561, 598, 601
BlsI	GCNGC	4 cut(s)	264, 562, 599, 602
BmeRI	GACNNNNNGTC	1 cut(s)	636
BmeT110I	CYCGRG	1 cut(s)	392
BmiI	GGNNCC	1 cut(s)	351
BmsI	GCATC	1 cut(s)	109
BpiI	GAAGAC	1 cut(s)	635
Bpu14I	TTCGAA	1 cut(s)	65
BsaI	GGTCTC	1 cut(s)	299
Bse1I	ACTGG	3 cut(s)	578, 645, 681
BseGI	GGATG	1 cut(s)	582
BseNI	ACTGG	3 cut(s)	578, 645, 681
BseRI	GAGGAG	1 cut(s)	467
BseXI	GCAGC	4 cut(s)	274, 572, 609, 612
BshFI	GGCC	2 cut(s)	293, 523
BsiHKCI	CYCGRG	1 cut(s)	392
BslFI	GGGAC	1 cut(s)	351
BsmAI	GTCTC	2 cut(s)	299, 466
BsmFI	GGGAC	1 cut(s)	351
BsmI	GAATGC	1 cut(s)	496
BsnI	GGCC	2 cut(s)	293, 523
Bso31I	GGTCTC	1 cut(s)	299
BsoBI	CYCGRG	1 cut(s)	392
Bsp119I	TTCGAA	1 cut(s)	65
Bsp143I	GATC	4 cut(s)	300, 349, 427, 622
BspANI	GGCC	2 cut(s)	293, 523
BspLI	GGNNCC	1 cut(s)	351
BspMAI	CTGCAG	1 cut(s)	674
BspMI	ACCTGC	1 cut(s)	43
BspPI	GGATC	3 cut(s)	344, 357, 435
BspT104I	TTCGAA	1 cut(s)	65
BspTNI	GGTCTC	1 cut(s)	299
BsrI	ACTGG	3 cut(s)	578, 645, 681
BssMI	GATC	4 cut(s)	300, 349, 427, 622
Bst4CI	ACNGT	1 cut(s)	255
Bst6I	CTCTTC	1 cut(s)	480
BstAPI	GCANNNNNTGC	1 cut(s)	224
BstBI	TTCGAA	1 cut(s)	65
BstC8I	GCNNGC	4 cut(s)	50, 158, 389, 404
BstDEI	CTNAG	1 cut(s)	481
BstEII	GGTNACC	1 cut(s)	55
BstF5I	GGATG	1 cut(s)	582
BstHHI	GCGC	2 cut(s)	229, 408
BstKTI	GATC	4 cut(s)	303, 352, 430, 625
BstMAI	GTCTC	2 cut(s)	299, 466
BstMBI	GATC	4 cut(s)	300, 349, 427, 622
BstMWI	GCNNNNNNNGC	4 cut(s)	128, 224, 271, 403
BstNSI	RCATGY	4 cut(s)	187, 218, 262, 655
BstPI	GGTNACC	1 cut(s)	55
BstSFI	CTRYAG	1 cut(s)	670
BstV1I	GCAGC	4 cut(s)	274, 572, 609, 612
BstV2I	GAAGAC	1 cut(s)	635
BstX2I	RGATCY	1 cut(s)	349
BstYI	RGATCY	1 cut(s)	349
BsuRI	GGCC	2 cut(s)	293, 523
BtgZI	GCGATG	1 cut(s)	132
BtsCI	GGATG	1 cut(s)	582
BveI	ACCTGC	1 cut(s)	43
Cac8I	GCNNGC	4 cut(s)	50, 158, 389, 404
CfoI	GCGC	2 cut(s)	229, 408
Csp6I	GTAC	2 cut(s)	256, 413
CviAII	CATG	7 cut(s)	184, 215, 259, 275, 289, 341, 652
CviQI	GTAC	2 cut(s)	256, 413
DdeI	CTNAG	1 cut(s)	481
DpnI	GATC	4 cut(s)	302, 351, 429, 624
DpnII	GATC	4 cut(s)	300, 349, 427, 622
DraIII	CACNNNGTG	1 cut(s)	510
DriI	GACNNNNNGTC	1 cut(s)	636
EaeI	YGGCCR	1 cut(s)	291
Eam1104I	CTCTTC	1 cut(s)	480
Eam1105I	GACNNNNNGTC	1 cut(s)	636
EarI	CTCTTC	1 cut(s)	480
Eco147I	AGGCCT	1 cut(s)	523
Eco31I	GGTCTC	1 cut(s)	299
Eco57I	CTGAAG	1 cut(s)	264
Eco88I	CYCGRG	1 cut(s)	392
Eco91I	GGTNACC	1 cut(s)	55
EcoO65I	GGTNACC	1 cut(s)	55
FaeI	CATG	7 cut(s)	187, 218, 262, 278, 292, 344, 655
FaqI	GGGAC	1 cut(s)	351
FatI	CATG	7 cut(s)	183, 214, 258, 274, 288, 340, 651
Fnu4HI	GCNGC	4 cut(s)	263, 561, 598, 601
FokI	GGATG	1 cut(s)	589
Fsp4HI	GCNGC	4 cut(s)	263, 561, 598, 601
FspBI	CTAG	2 cut(s)	174, 311
FspI	TGCGCA	1 cut(s)	407
GlaI	GCGC	2 cut(s)	228, 407
GluI	GCNGC	4 cut(s)	263, 561, 598, 601
HaeIII	GGCC	2 cut(s)	293, 523
HhaI	GCGC	2 cut(s)	229, 408
Hin1II	CATG	7 cut(s)	187, 218, 262, 278, 292, 344, 655
Hin6I	GCGC	2 cut(s)	227, 406
HinP1I	GCGC	2 cut(s)	227, 406
HindIII	AAGCTT	2 cut(s)	315, 400
HinfI	GANTC	3 cut(s)	30, 278, 474
HphI	GGTGA	2 cut(s)	16, 34
Hpy188I	TCNGA	8 cut(s)	150, 181, 283, 378, 531, 622, 627, 660
Hpy188III	TCNNGA	1 cut(s)	304
Hpy99I	CGWCG	1 cut(s)	75
HpyAV	CCTTC	2 cut(s)	85, 145
HpyCH4III	ACNGT	1 cut(s)	255
HpyCH4IV	ACGT	1 cut(s)	70
HpyCH4V	TGCA	8 cut(s)	131, 187, 218, 262, 494, 518, 651, 672
HpyF10VI	GCNNNNNNNGC	4 cut(s)	128, 224, 271, 403
HpyF3I	CTNAG	1 cut(s)	481
HpySE526I	ACGT	1 cut(s)	70
Hsp92II	CATG	7 cut(s)	187, 218, 262, 278, 292, 344, 655
HspAI	GCGC	2 cut(s)	227, 406
Kzo9I	GATC	4 cut(s)	300, 349, 427, 622
LmnI	GCTCC	1 cut(s)	442
LpnPI	CCDG	9 cut(s)	34, 38, 142, 401, 559, 646, 654, 658, 662
Lsp1109I	GCAGC	4 cut(s)	274, 572, 609, 612
LweI	GCATC	1 cut(s)	109
MaeI	CTAG	2 cut(s)	174, 311
MaeII	ACGT	1 cut(s)	70
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	4 cut(s)	302, 351, 429, 624
MboI	GATC	4 cut(s)	300, 349, 427, 622
MboII	GAAGA	5 cut(s)	100, 310, 377, 497, 640
MfeI	CAATTG	1 cut(s)	266
MflI	RGATCY	1 cut(s)	349
MlsI	TGGCCA	1 cut(s)	293
MluCI	AATT	3 cut(s)	266, 609, 616
MluNI	TGGCCA	1 cut(s)	293
MlyI	GAGTC	1 cut(s)	468
MnlI	CCTC	3 cut(s)	13, 321, 488
Mox20I	TGGCCA	1 cut(s)	293
MscI	TGGCCA	1 cut(s)	293
MseI	TTAA	2 cut(s)	612, 663
MslI	CAYNNNNRTG	1 cut(s)	213
Msp20I	TGGCCA	1 cut(s)	293
MunI	CAATTG	1 cut(s)	266
Mva1269I	GAATGC	1 cut(s)	496
MwoI	GCNNNNNNNGC	4 cut(s)	128, 224, 271, 403
NdeII	GATC	4 cut(s)	300, 349, 427, 622
NlaIII	CATG	7 cut(s)	187, 218, 262, 278, 292, 344, 655
NlaIV	GGNNCC	1 cut(s)	351
NsbI	TGCGCA	1 cut(s)	407
NspI	RCATGY	4 cut(s)	187, 218, 262, 655
NspV	TTCGAA	1 cut(s)	65
PaeR7I	CTCGAG	1 cut(s)	392
PceI	AGGCCT	1 cut(s)	523
PctI	GAATGC	1 cut(s)	496
PfeI	GAWTC	2 cut(s)	30, 278
PkrI	GCNGC	4 cut(s)	264, 562, 599, 602
PleI	GAGTC	1 cut(s)	468
PpsI	GAGTC	1 cut(s)	468
PshBI	ATTAAT	2 cut(s)	612, 663
PsiI	TTATAA	1 cut(s)	570
PspEI	GGTNACC	1 cut(s)	55
PspN4I	GGNNCC	1 cut(s)	351
PspXI	VCTCGAGB	1 cut(s)	392
PstI	CTGCAG	1 cut(s)	674
PsuI	RGATCY	1 cut(s)	349
RsaI	GTAC	2 cut(s)	257, 414
RsaNI	GTAC	2 cut(s)	256, 413
RseI	CAYNNNNRTG	1 cut(s)	213
SaqAI	TTAA	2 cut(s)	612, 663
SatI	GCNGC	4 cut(s)	263, 561, 598, 601
Sau3AI	GATC	4 cut(s)	300, 349, 427, 622
SchI	GAGTC	1 cut(s)	468
SfaNI	GCATC	1 cut(s)	109
SfcI	CTRYAG	1 cut(s)	670
Sfr274I	CTCGAG	1 cut(s)	392
SfuI	TTCGAA	1 cut(s)	65
SlaI	CTCGAG	1 cut(s)	392
SmiMI	CAYNNNNRTG	1 cut(s)	213
SmlI	CTYRAG	1 cut(s)	392
SmoI	CTYRAG	1 cut(s)	392
Sse9I	AATT	3 cut(s)	266, 609, 616
SseBI	AGGCCT	1 cut(s)	523
SspMI	CTAG	2 cut(s)	174, 311
StuI	AGGCCT	1 cut(s)	523
TaaI	ACNGT	1 cut(s)	255
TaiI	ACGT	1 cut(s)	73
TaqI	TCGA	5 cut(s)	33, 65, 73, 303, 393
TasI	AATT	3 cut(s)	266, 609, 616
TatI	WGTACW	1 cut(s)	255
TfiI	GAWTC	2 cut(s)	30, 278
Tru1I	TTAA	2 cut(s)	612, 663
Tru9I	TTAA	2 cut(s)	612, 663
TseI	GCWGC	4 cut(s)	262, 560, 597, 600
TspDTI	ATGAA	2 cut(s)	291, 593
TspGWI	ACGGA	1 cut(s)	340
VspI	ATTAAT	2 cut(s)	612, 663
XceI	RCATGY	4 cut(s)	187, 218, 262, 655
XhoI	CTCGAG	1 cut(s)	392
XspI	CTAG	2 cut(s)	174, 311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.