Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0000758

Physical Location & Seq

Genomic Coordinates Reverse (-)

29255242 .. 29261402

Gene Structure 6161 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1193600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGAAAAGAATTGAGAATGCCACAAGCCGGCAGGTGACCTTCTCCAAACGTCGAAACGGCTTGTTAAAGAAAGCTTATGAACTTTCGGTTCTTTGCGATGCTGAAGTTGCAGTCATCATCTTCTCCCAGAAGGACAGGCTCTATGAGTTCTCCAGCTCTGACATGCGAGAGACTCTAACACGATACCGTAAATATGCAAAAGATCATGAGCAAACCAACAAGGTTGAAGTGGAACAACATGTGCAGCACTTGAAACATGAATCAGCTATTATGGCCAAGAAGATAGAGATCCTAGAAGCTACTCAAAGGAAGCTTTTGGGAAATGATTTGGATTCTTGCTATGTTGAAGAACTCCAAGAGTTGAGTAGCCAGCTTGAACGAAGTTTACGCAGCATAAGAGAGAGAAAGGCTCAATTATTCATGGAGCAGATGGAACAGCTAAAGGCAAAGGAGACTCTCCTCTTACAAGAGAATGCAAAATTACGTGAACAGAGTGGTGCAAAGCTGTGGATGGAGCATTCAGTTCAAGCAAAAAGAGCTTCTACTTTAAGCTATGAAAAAGCAGGAGTTTCTGCTTCTGTAAACTACAGGAGCCAAGGTAGCATGAGTTCTGAGGTGGAGACTGAATTGTTCATTGGACCGCCAATAATGCGCGCTGTTGATGCATCACAGCCTGAGTCAACATACATCAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0007568 GO:0008150 GO:0009791 GO:0009838 GO:0009889 GO:0009908 GO:0009909 GO:0010150 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048437 GO:0048580 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080187 GO:0090567 GO:0090693 GO:0099402 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

232

Amino Acids

26.7

Weight (kDa)

8.72

Isoelectric Point (pI)

55.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	3 - 50	1.8e-26	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	78 - 164	5.4e-23	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000758)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165
fragaria_vesca	FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740
malus_domestica	MD00G1004400.v1.1 MD00G1004600.v1.1 MD01G1193300.v1.1 MD01G1193500.v1.1 MD01G1193600.v1.1
prunus_persica	Prupe.2G287500_v2.0.a1
pyrus_communis	pycom01g20400 pycom01g20410 pycom07g23970
rosa_chinensis	RchiOBHm_Chr1g0376251 RchiOBHm_Chr1g0376271 RchiOBHm_Chr1g0376291
rosa_laevigata	RLG00000026614 RLG00000026615 RLG00000026616
rosa_multiflora	Rmu_co8488767.1_g000001 Rmu_ssc0000116.1_g000059 Rmu_ssc0000116.1_g000060
rosa_roxburghii	Rroxscaffold_4G00282230 Rroxscaffold_4G00282240 Rroxscaffold_4G00282270
rosa_rugosa	Rorug01G0394900 Rorug01G0395000
rosa_samantha	Rh1AG406300 Rh1AG406400 Rh1BG370100 Rh1BG370400 Rh1CG383000 Rh1CG383100 Rh1CG383200 Rh1DG399900 Rh1DG400200
rosa_wichuraiana	Rw1G036050 Rw1G036060 Rw1G036070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	22
Acc36I	ACCTGC	1 cut(s)	22
AccII	CGCG	1 cut(s)	654
AciI	CCGC	1 cut(s)	641
AclWI	GGATC	1 cut(s)	283
AcoI	YGGCCR	1 cut(s)	273
AcuI	CTGAAG	1 cut(s)	123
AfiI	CCNNNNNNNGG	1 cut(s)	27
AflIII	ACRYGT	1 cut(s)	238
AgsI	TTSAA	5 cut(s)	227, 253, 347, 377, 527
AjuI	GAANNNNNNNTTGG	2 cut(s)	618, 650
Alw26I	GTCTC	3 cut(s)	164, 446, 614
AlwI	GGATC	1 cut(s)	283
AoxI	GGCC	1 cut(s)	273
ApeKI	GCWGC	2 cut(s)	244, 390
AspLEI	GCGC	2 cut(s)	654, 656
AspS9I	GGNCC	1 cut(s)	638
AsuHPI	GGTGA	1 cut(s)	46
AvaII	GGWCC	1 cut(s)	638
BalI	TGGCCA	1 cut(s)	275
BbvI	GCAGC	2 cut(s)	256, 402
BccI	CCATC	2 cut(s)	424, 505
BceAI	ACGGC	1 cut(s)	73
BcoDI	GTCTC	3 cut(s)	164, 446, 614
BfaI	CTAG	1 cut(s)	293
BfmI	CTRYAG	1 cut(s)	586
BfuAI	ACCTGC	1 cut(s)	22
BisI	GCNGC	2 cut(s)	245, 391
BlsI	GCNGC	2 cut(s)	246, 392
Bme18I	GGWCC	1 cut(s)	638
BmgT120I	GGNCC	1 cut(s)	638
BmiI	GGNNCC	1 cut(s)	593
BmsI	GCATC	3 cut(s)	88, 652, 674
BplI	GAGNNNNNCTC	2 cut(s)	394, 426
BpmI	CTGGAG	1 cut(s)	136
BsaAI	YACGTR	1 cut(s)	485
BsaBI	GATNNNNATC	1 cut(s)	287
BsaJI	CCNNGG	1 cut(s)	595
BsaXI	ACNNNNNCTCC	2 cut(s)	583, 613
Bsc4I	CCNNNNNNNGG	1 cut(s)	27
Bse118I	RCCGGY	1 cut(s)	27
Bse8I	GATNNNNATC	1 cut(s)	287
BseDI	CCNNGG	1 cut(s)	595
BseGI	GGATG	1 cut(s)	516
BseJI	GATNNNNATC	1 cut(s)	287
BseLI	CCNNNNNNNGG	1 cut(s)	27
BseMII	CTCAG	2 cut(s)	603, 666
BsePI	GCGCGC	1 cut(s)	652
BseRI	GAGGAG	1 cut(s)	449
BseXI	GCAGC	2 cut(s)	256, 402
BsgI	GTGCAG	1 cut(s)	263
Bsh1236I	CGCG	1 cut(s)	654
BshFI	GGCC	1 cut(s)	275
BsiSI	CCGG	1 cut(s)	28
BslI	CCNNNNNNNGG	1 cut(s)	27
BsmAI	GTCTC	3 cut(s)	164, 446, 614
BsmI	GAATGC	3 cut(s)	22, 478, 517
BsnI	GGCC	1 cut(s)	275
Bsp143I	GATC	2 cut(s)	202, 288
BspACI	CCGC	1 cut(s)	641
BspANI	GGCC	1 cut(s)	275
BspCNI	CTCAG	2 cut(s)	604, 667
BspFNI	CGCG	1 cut(s)	654
BspHI	TCATGA	1 cut(s)	205
BspLI	GGNNCC	1 cut(s)	593
BspMI	ACCTGC	1 cut(s)	22
BspPI	GGATC	1 cut(s)	283
BsrFI	RCCGGY	1 cut(s)	27
BssAI	RCCGGY	1 cut(s)	27
BssECI	CCNNGG	1 cut(s)	595
BssHII	GCGCGC	1 cut(s)	652
BssMI	GATC	2 cut(s)	202, 288
BssT1I	CCWWGG	1 cut(s)	595
Bst4CI	ACNGT	1 cut(s)	188
BstBAI	YACGTR	1 cut(s)	485
BstC8I	GCNNGC	3 cut(s)	29, 371, 654
BstDEI	CTNAG	2 cut(s)	612, 675
BstEII	GGTNACC	1 cut(s)	34
BstF5I	GGATG	1 cut(s)	516
BstFNI	CGCG	1 cut(s)	654
BstHHI	GCGC	2 cut(s)	654, 656
BstKTI	GATC	2 cut(s)	205, 291
BstMAI	GTCTC	3 cut(s)	164, 446, 614
BstMBI	GATC	2 cut(s)	202, 288
BstMWI	GCNNNNNNNGC	6 cut(s)	107, 272, 536, 600, 649, 662
BstNSI	RCATGY	2 cut(s)	166, 242
BstPI	GGTNACC	1 cut(s)	34
BstSFI	CTRYAG	1 cut(s)	586
BstUI	CGCG	1 cut(s)	654
BstV1I	GCAGC	2 cut(s)	256, 402
BstX2I	RGATCY	1 cut(s)	288
BstYI	RGATCY	1 cut(s)	288
BsuRI	GGCC	1 cut(s)	275
BtgZI	GCGATG	1 cut(s)	111
BtsCI	GGATG	1 cut(s)	516
BveI	ACCTGC	1 cut(s)	22
Cac8I	GCNNGC	3 cut(s)	29, 371, 654
CciI	TCATGA	1 cut(s)	205
CfoI	GCGC	2 cut(s)	654, 656
Cfr10I	RCCGGY	1 cut(s)	27
Cfr13I	GGNCC	1 cut(s)	638
CviAII	CATG	6 cut(s)	163, 206, 239, 257, 421, 604
DdeI	CTNAG	2 cut(s)	612, 675
DpnI	GATC	2 cut(s)	204, 290
DpnII	GATC	2 cut(s)	202, 288
EaeI	YGGCCR	1 cut(s)	273
Eco130I	CCWWGG	1 cut(s)	595
Eco47I	GGWCC	1 cut(s)	638
Eco57I	CTGAAG	1 cut(s)	123
Eco91I	GGTNACC	1 cut(s)	34
EcoO65I	GGTNACC	1 cut(s)	34
EcoT14I	CCWWGG	1 cut(s)	595
EcoT22I	ATGCAT	1 cut(s)	667
ErhI	CCWWGG	1 cut(s)	595
FaeI	CATG	6 cut(s)	166, 209, 242, 260, 424, 607
FatI	CATG	6 cut(s)	162, 205, 238, 256, 420, 603
Fnu4HI	GCNGC	2 cut(s)	245, 391
FokI	GGATG	1 cut(s)	523
Fsp4HI	GCNGC	2 cut(s)	245, 391
FspBI	CTAG	1 cut(s)	293
GlaI	GCGC	2 cut(s)	653, 655
GluI	GCNGC	2 cut(s)	245, 391
GsuI	CTGGAG	1 cut(s)	136
HaeIII	GGCC	1 cut(s)	275
HapII	CCGG	1 cut(s)	28
HhaI	GCGC	2 cut(s)	654, 656
Hin1II	CATG	6 cut(s)	166, 209, 242, 260, 424, 607
Hin6I	GCGC	2 cut(s)	652, 654
HinP1I	GCGC	2 cut(s)	652, 654
HincII	GTYRAC	1 cut(s)	681
HindII	GTYRAC	1 cut(s)	681
HindIII	AAGCTT	2 cut(s)	72, 311
HinfI	GANTC	5 cut(s)	172, 260, 332, 454, 677
HpaII	CCGG	1 cut(s)	28
HphI	GGTGA	1 cut(s)	46
Hpy166II	GTNNAC	4 cut(s)	386, 488, 583, 681
Hpy188I	TCNGA	3 cut(s)	160, 613, 692
Hpy188III	TCNNGA	1 cut(s)	206
Hpy8I	GTNNAC	4 cut(s)	386, 488, 583, 681
Hpy99I	CGWCG	1 cut(s)	54
HpyAV	CCTTC	2 cut(s)	49, 124
HpyCH4III	ACNGT	1 cut(s)	188
HpyCH4IV	ACGT	2 cut(s)	49, 484
HpyCH4V	TGCA	6 cut(s)	110, 197, 244, 476, 500, 665
HpyF10VI	GCNNNNNNNGC	6 cut(s)	107, 272, 536, 600, 649, 662
HpyF3I	CTNAG	2 cut(s)	612, 675
HpySE526I	ACGT	2 cut(s)	49, 484
Hsp92II	CATG	6 cut(s)	166, 209, 242, 260, 424, 607
HspAI	GCGC	2 cut(s)	652, 654
KroI	GCCGGC	1 cut(s)	27
KroNI	GCCGGC	1 cut(s)	29
Kzo9I	GATC	2 cut(s)	202, 288
LmnI	GCTCC	3 cut(s)	424, 514, 591
LpnPI	CCDG	9 cut(s)	17, 41, 121, 140, 166, 383, 549, 574, 687
Lsp1109I	GCAGC	2 cut(s)	256, 402
LweI	GCATC	3 cut(s)	88, 652, 674
MaeI	CTAG	1 cut(s)	293
MaeII	ACGT	2 cut(s)	49, 484
MaeIII	GTNAC	1 cut(s)	34
MalI	GATC	2 cut(s)	204, 290
MboI	GATC	2 cut(s)	202, 288
MboII	GAAGA	3 cut(s)	112, 292, 359
MflI	RGATCY	1 cut(s)	288
MlsI	TGGCCA	1 cut(s)	275
MluCI	AATT	4 cut(s)	9, 413, 479, 626
MluNI	TGGCCA	1 cut(s)	275
MlyI	GAGTC	3 cut(s)	166, 448, 686
MnlI	CCTC	2 cut(s)	470, 607
Mox20I	TGGCCA	1 cut(s)	275
Mph1103I	ATGCAT	1 cut(s)	667
MroNI	GCCGGC	1 cut(s)	27
MscI	TGGCCA	1 cut(s)	275
MseI	TTAA	2 cut(s)	65, 548
Msp20I	TGGCCA	1 cut(s)	275
MspI	CCGG	1 cut(s)	28
Mva1269I	GAATGC	3 cut(s)	22, 478, 517
MvnI	CGCG	1 cut(s)	654
MwoI	GCNNNNNNNGC	6 cut(s)	107, 272, 536, 600, 649, 662
NaeI	GCCGGC	1 cut(s)	29
NdeII	GATC	2 cut(s)	202, 288
NgoMIV	GCCGGC	1 cut(s)	27
NlaIII	CATG	6 cut(s)	166, 209, 242, 260, 424, 607
NlaIV	GGNNCC	1 cut(s)	593
NmuCI	GTSAC	1 cut(s)	34
NsiI	ATGCAT	1 cut(s)	667
NspI	RCATGY	2 cut(s)	166, 242
PagI	TCATGA	1 cut(s)	205
PaqCI	CACCTGC	1 cut(s)	22
PauI	GCGCGC	1 cut(s)	652
PciI	ACATGT	1 cut(s)	238
PctI	GAATGC	3 cut(s)	22, 478, 517
PdiI	GCCGGC	1 cut(s)	29
PfeI	GAWTC	2 cut(s)	260, 332
PkrI	GCNGC	2 cut(s)	246, 392
PleI	GAGTC	3 cut(s)	166, 448, 685
PpsI	GAGTC	3 cut(s)	166, 448, 685
Ppu21I	YACGTR	1 cut(s)	485
PscI	ACATGT	1 cut(s)	238
PspEI	GGTNACC	1 cut(s)	34
PspN4I	GGNNCC	1 cut(s)	593
PspPI	GGNCC	1 cut(s)	638
PsrI	GAACNNNNNNTAC	4 cut(s)	369, 401, 592, 624
PsuI	RGATCY	1 cut(s)	288
PteI	GCGCGC	1 cut(s)	652
SaqAI	TTAA	2 cut(s)	65, 548
SatI	GCNGC	2 cut(s)	245, 391
Sau3AI	GATC	2 cut(s)	202, 288
Sau96I	GGNCC	1 cut(s)	638
SchI	GAGTC	3 cut(s)	166, 448, 686
SfaNI	GCATC	3 cut(s)	88, 652, 674
SfcI	CTRYAG	1 cut(s)	586
SinI	GGWCC	1 cut(s)	638
Sse9I	AATT	4 cut(s)	9, 413, 479, 626
SsiI	CCGC	1 cut(s)	641
SspMI	CTAG	1 cut(s)	293
StyI	CCWWGG	1 cut(s)	595
TaaI	ACNGT	1 cut(s)	188
TaiI	ACGT	2 cut(s)	52, 487
TaqI	TCGA	1 cut(s)	52
TasI	AATT	4 cut(s)	9, 413, 479, 626
TfiI	GAWTC	2 cut(s)	260, 332
Tru1I	TTAA	2 cut(s)	65, 548
Tru9I	TTAA	2 cut(s)	65, 548
TseFI	GTSAC	1 cut(s)	34
TseI	GCWGC	2 cut(s)	244, 390
Tsp45I	GTSAC	1 cut(s)	34
TspDTI	ATGAA	6 cut(s)	17, 93, 273, 409, 570, 622
VpaK11BI	GGWCC	1 cut(s)	638
XceI	RCATGY	2 cut(s)	166, 242
XspI	CTAG	1 cut(s)	293
Zsp2I	ATGCAT	1 cut(s)	667

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.