Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0000758

Physical Location & Seq

Genomic Coordinates Reverse (-)

65337134 .. 65343970

Gene Structure 6837 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG383200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGAGAATGAGAGGCACTTGCAAAGCAGAGAAAGACATGTTTGATACTTTCTTGGGGGACTGGGTCTTGACTATCCAGGAGATGGTGAGAGGGAAGATTCAGATGAAAAGAATCGAAAATGCGACAAGCAGGCAGGTAACCTTTTCGAAACGTCGAAACGGGTTGTTGAAGAAGGCTTATGAGCTTTCGGTTCTTTGCGATGCCGAAGTTGCAGTGATCATCTTTTCTCAGAATGGCAGGCTCTACGAGTTTTCCAGCTCTGACATGCAAAAGACTATAAACCAATACCATAAACATGCAAAAGGTGTGCAAACCAACACTATTGAAGTGGAACAGTGTATGCAGCAATTGAAGCATGAATCAGCTGACATGGCCAAGAAGATTGAGATCCTAGAAGCTTCTCAACGGAGGCTTTTGGGACATGACTTAGATTCTTGCTCTGCTCAAGAACTCAATCAGATCAGTAGCCAGCTCGAGCGAAGCTTGTGCATTGTACGAGAGAGAAAGGCTCAGCTATTCATGGAGCAGATAGAACGACTAAAAGAAAAGGGGAGGCTCCTCTTAGAAGAGAATGTAAAACTACACACAGAGTGTGGTGCAAGGCGTTGTCAGAAACCTTTAATTCAAAAAAAAGGAGTTGGGGCGGCAAGTTGTAACTGGATGAATAGTAGTCAAAGTAGCAGCAGTCAAACAATTAGTAATTCAGATCAGAAGACCAGAAGCCTTGGCAGTTGCATGTATCTGATTAATAACTGCAGACTGGAAACTGAACACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0007568 GO:0008150 GO:0009791 GO:0009838 GO:0009889 GO:0009908 GO:0009909 GO:0010150 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048437 GO:0048580 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080187 GO:0090567 GO:0090693 GO:0099402 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

258

Amino Acids

29.6

Weight (kDa)

9.07

Isoelectric Point (pI)

51.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	37 - 84	1.3e-27	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	114 - 197	4e-22	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000758)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165
fragaria_vesca	FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740
malus_domestica	MD00G1004400.v1.1 MD00G1004600.v1.1 MD01G1193300.v1.1 MD01G1193500.v1.1 MD01G1193600.v1.1
prunus_persica	Prupe.2G287500_v2.0.a1
pyrus_communis	pycom01g20400 pycom01g20410 pycom07g23970
rosa_chinensis	RchiOBHm_Chr1g0376251 RchiOBHm_Chr1g0376271 RchiOBHm_Chr1g0376291
rosa_laevigata	RLG00000026614 RLG00000026615 RLG00000026616
rosa_multiflora	Rmu_co8488767.1_g000001 Rmu_ssc0000116.1_g000059 Rmu_ssc0000116.1_g000060
rosa_roxburghii	Rroxscaffold_4G00282230 Rroxscaffold_4G00282240 Rroxscaffold_4G00282270
rosa_rugosa	Rorug01G0394900 Rorug01G0395000
rosa_samantha	Rh1AG406300 Rh1AG406400 Rh1BG370100 Rh1BG370400 Rh1CG383000 Rh1CG383100 Rh1CG383200 Rh1DG399900 Rh1DG400200
rosa_wichuraiana	Rw1G036050 Rw1G036060 Rw1G036070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	124
AccB7I	CCANNNNNTGG	1 cut(s)	82
AciI	CCGC	1 cut(s)	644
AclWI	GGATC	1 cut(s)	382
AcoI	YGGCCR	1 cut(s)	372
AdeI	CACNNNGTG	1 cut(s)	591
AfaI	GTAC	1 cut(s)	495
AfiI	CCNNNNNNNGG	1 cut(s)	82
AflIII	ACRYGT	1 cut(s)	36
AgsI	TTSAA	4 cut(s)	169, 326, 352, 626
AjnI	CCWGG	1 cut(s)	75
AluBI	AGCT	7 cut(s)	184, 258, 365, 398, 472, 483, 514
AluI	AGCT	7 cut(s)	184, 258, 365, 398, 472, 483, 514
AlwI	GGATC	1 cut(s)	382
Ama87I	CYCGRG	1 cut(s)	473
AoxI	GGCC	1 cut(s)	372
ApeKI	GCWGC	2 cut(s)	343, 681
AseI	ATTAAT	1 cut(s)	747
AsuHPI	GGTGA	1 cut(s)	97
AsuII	TTCGAA	1 cut(s)	146
AvaI	CYCGRG	1 cut(s)	473
BalI	TGGCCA	1 cut(s)	374
BbsI	GAAGAC	1 cut(s)	719
BbvI	GCAGC	2 cut(s)	355, 693
BccI	CCATC	1 cut(s)	76
BcgI	CGANNNNNNTGC	2 cut(s)	468, 502
BciT130I	CCWGG	1 cut(s)	77
BclI	TGATCA	1 cut(s)	216
BfaI	CTAG	1 cut(s)	392
BfmI	CTRYAG	1 cut(s)	754
BfuAI	ACCTGC	1 cut(s)	124
BisI	GCNGC	3 cut(s)	344, 645, 682
BlpI	GCTNAGC	1 cut(s)	510
BlsI	GCNGC	3 cut(s)	345, 646, 683
Bme1390I	CCNGG	1 cut(s)	77
BmeT110I	CYCGRG	1 cut(s)	473
BmiI	GGNNCC	1 cut(s)	557
BmrFI	CCNGG	1 cut(s)	77
BmrI	ACTGGG	1 cut(s)	70
BmsI	GCATC	1 cut(s)	190
BmuI	ACTGGG	1 cut(s)	70
BpiI	GAAGAC	1 cut(s)	719
BplI	GAGNNNNNCTC	2 cut(s)	493, 525
Bpu1102I	GCTNAGC	1 cut(s)	510
Bpu14I	TTCGAA	1 cut(s)	146
BpuEI	CTTGAG	1 cut(s)	429
BsaBI	GATNNNNATC	1 cut(s)	386
BsaJI	CCNNGG	1 cut(s)	724
Bsc4I	CCNNNNNNNGG	1 cut(s)	82
Bse1I	ACTGG	3 cut(s)	65, 662, 765
Bse8I	GATNNNNATC	1 cut(s)	386
BseBI	CCWGG	1 cut(s)	77
BseDI	CCNNGG	1 cut(s)	724
BseGI	GGATG	1 cut(s)	666
BseJI	GATNNNNATC	1 cut(s)	386
BseLI	CCNNNNNNNGG	1 cut(s)	82
BseMII	CTCAG	2 cut(s)	242, 524
BseNI	ACTGG	3 cut(s)	65, 662, 765
BseRI	GAGGAG	1 cut(s)	548
BseXI	GCAGC	2 cut(s)	355, 693
BshFI	GGCC	1 cut(s)	374
BsiHKCI	CYCGRG	1 cut(s)	473
BslFI	GGGAC	2 cut(s)	71, 432
BslI	CCNNNNNNNGG	1 cut(s)	82
BsmFI	GGGAC	2 cut(s)	71, 432
BsnI	GGCC	1 cut(s)	374
BsoBI	CYCGRG	1 cut(s)	473
Bsp119I	TTCGAA	1 cut(s)	146
Bsp143I	GATC	4 cut(s)	216, 387, 459, 706
Bsp1720I	GCTNAGC	1 cut(s)	510
BspACI	CCGC	1 cut(s)	644
BspANI	GGCC	1 cut(s)	374
BspCNI	CTCAG	2 cut(s)	241, 523
BspLI	GGNNCC	1 cut(s)	557
BspMAI	CTGCAG	1 cut(s)	758
BspMI	ACCTGC	1 cut(s)	124
BspPI	GGATC	1 cut(s)	382
BspT104I	TTCGAA	1 cut(s)	146
BsrI	ACTGG	3 cut(s)	65, 662, 765
BssECI	CCNNGG	1 cut(s)	724
BssMI	GATC	4 cut(s)	216, 387, 459, 706
BssT1I	CCWWGG	1 cut(s)	724
Bst2UI	CCWGG	1 cut(s)	77
Bst4CI	ACNGT	1 cut(s)	336
Bst6I	CTCTTC	1 cut(s)	561
BstBI	TTCGAA	1 cut(s)	146
BstC8I	GCNNGC	3 cut(s)	131, 239, 470
BstDEI	CTNAG	4 cut(s)	228, 427, 510, 562
BstEII	GGTNACC	1 cut(s)	136
BstF5I	GGATG	1 cut(s)	666
BstKTI	GATC	4 cut(s)	219, 390, 462, 709
BstMBI	GATC	4 cut(s)	216, 387, 459, 706
BstMWI	GCNNNNNNNGC	3 cut(s)	209, 352, 371
BstNI	CCWGG	1 cut(s)	77
BstNSI	RCATGY	4 cut(s)	40, 268, 299, 739
BstPI	GGTNACC	1 cut(s)	136
BstSCI	CCNGG	1 cut(s)	75
BstSFI	CTRYAG	1 cut(s)	754
BstV1I	GCAGC	2 cut(s)	355, 693
BstV2I	GAAGAC	1 cut(s)	719
BstX2I	RGATCY	1 cut(s)	387
BstYI	RGATCY	1 cut(s)	387
BsuRI	GGCC	1 cut(s)	374
BtgZI	GCGATG	1 cut(s)	213
BtsCI	GGATG	1 cut(s)	666
BtsI	GCAGTG	1 cut(s)	219
BtsIMutI	CAGTG	3 cut(s)	219, 341, 772
BveI	ACCTGC	1 cut(s)	124
Cac8I	GCNNGC	3 cut(s)	131, 239, 470
Csp6I	GTAC	1 cut(s)	494
CviAII	CATG	8 cut(s)	37, 265, 296, 356, 370, 422, 520, 736
CviQI	GTAC	1 cut(s)	494
DdeI	CTNAG	4 cut(s)	228, 427, 510, 562
DpnI	GATC	4 cut(s)	218, 389, 461, 708
DpnII	GATC	4 cut(s)	216, 387, 459, 706
DraIII	CACNNNGTG	1 cut(s)	591
EaeI	YGGCCR	1 cut(s)	372
Eam1104I	CTCTTC	1 cut(s)	561
EarI	CTCTTC	1 cut(s)	561
Eco130I	CCWWGG	1 cut(s)	724
Eco88I	CYCGRG	1 cut(s)	473
Eco91I	GGTNACC	1 cut(s)	136
EcoO65I	GGTNACC	1 cut(s)	136
EcoRII	CCWGG	1 cut(s)	75
EcoT14I	CCWWGG	1 cut(s)	724
ErhI	CCWWGG	1 cut(s)	724
FaeI	CATG	8 cut(s)	40, 268, 299, 359, 373, 425, 523, 739
FaqI	GGGAC	2 cut(s)	71, 432
FatI	CATG	8 cut(s)	36, 264, 295, 355, 369, 421, 519, 735
FbaI	TGATCA	1 cut(s)	216
Fnu4HI	GCNGC	3 cut(s)	344, 645, 682
FokI	GGATG	1 cut(s)	673
Fsp4HI	GCNGC	3 cut(s)	344, 645, 682
FspBI	CTAG	1 cut(s)	392
GluI	GCNGC	3 cut(s)	344, 645, 682
HaeIII	GGCC	1 cut(s)	374
Hin1II	CATG	8 cut(s)	40, 268, 299, 359, 373, 425, 523, 739
HindIII	AAGCTT	2 cut(s)	396, 481
HinfI	GANTC	4 cut(s)	97, 111, 359, 431
HphI	GGTGA	1 cut(s)	97
Hpy188I	TCNGA	8 cut(s)	102, 231, 262, 459, 612, 706, 711, 744
Hpy188III	TCNNGA	2 cut(s)	67, 446
Hpy99I	CGWCG	1 cut(s)	156
HpyAV	CCTTC	1 cut(s)	166
HpyCH4III	ACNGT	1 cut(s)	336
HpyCH4IV	ACGT	1 cut(s)	151
HpyF10VI	GCNNNNNNNGC	3 cut(s)	209, 352, 371
HpyF3I	CTNAG	4 cut(s)	228, 427, 510, 562
HpySE526I	ACGT	1 cut(s)	151
Hsp92II	CATG	8 cut(s)	40, 268, 299, 359, 373, 425, 523, 739
Ksp22I	TGATCA	1 cut(s)	216
Kzo9I	GATC	4 cut(s)	216, 387, 459, 706
LmnI	GCTCC	2 cut(s)	523, 561
Lsp1109I	GCAGC	2 cut(s)	355, 693
LweI	GCATC	1 cut(s)	190
MaeI	CTAG	1 cut(s)	392
MaeII	ACGT	1 cut(s)	151
MaeIII	GTNAC	2 cut(s)	136, 653
MalI	GATC	4 cut(s)	218, 389, 461, 708
MboI	GATC	4 cut(s)	216, 387, 459, 706
MboII	GAAGA	5 cut(s)	106, 181, 391, 578, 724
MfeI	CAATTG	1 cut(s)	347
MflI	RGATCY	1 cut(s)	387
MlsI	TGGCCA	1 cut(s)	374
MluCI	AATT	4 cut(s)	347, 621, 693, 700
MluNI	TGGCCA	1 cut(s)	374
MnlI	CCTC	5 cut(s)	5, 83, 402, 546, 569
Mox20I	TGGCCA	1 cut(s)	374
MscI	TGGCCA	1 cut(s)	374
MseI	TTAA	2 cut(s)	620, 747
MslI	CAYNNNNRTG	1 cut(s)	294
Msp20I	TGGCCA	1 cut(s)	374
MspA1I	CMGCKG	1 cut(s)	365
MspR9I	CCNGG	1 cut(s)	77
MunI	CAATTG	1 cut(s)	347
MvaI	CCWGG	1 cut(s)	77
MwoI	GCNNNNNNNGC	3 cut(s)	209, 352, 371
NdeII	GATC	4 cut(s)	216, 387, 459, 706
NlaIII	CATG	8 cut(s)	40, 268, 299, 359, 373, 425, 523, 739
NlaIV	GGNNCC	1 cut(s)	557
NspI	RCATGY	4 cut(s)	40, 268, 299, 739
NspV	TTCGAA	1 cut(s)	146
PaeR7I	CTCGAG	1 cut(s)	473
PciI	ACATGT	1 cut(s)	36
PfeI	GAWTC	4 cut(s)	97, 111, 359, 431
PflFI	GACNNNGTC	1 cut(s)	62
PflMI	CCANNNNNTGG	1 cut(s)	82
PfoI	TCCNGGA	1 cut(s)	75
PkrI	GCNGC	3 cut(s)	345, 646, 683
PscI	ACATGT	1 cut(s)	36
PshBI	ATTAAT	1 cut(s)	747
Psp6I	CCWGG	1 cut(s)	75
PspEI	GGTNACC	1 cut(s)	136
PspGI	CCWGG	1 cut(s)	75
PspN4I	GGNNCC	1 cut(s)	557
PspXI	VCTCGAGB	1 cut(s)	473
PstI	CTGCAG	1 cut(s)	758
PsuI	RGATCY	1 cut(s)	387
PsyI	GACNNNGTC	1 cut(s)	62
PvuII	CAGCTG	1 cut(s)	365
RsaI	GTAC	1 cut(s)	495
RsaNI	GTAC	1 cut(s)	494
RseI	CAYNNNNRTG	1 cut(s)	294
SaqAI	TTAA	2 cut(s)	620, 747
SatI	GCNGC	3 cut(s)	344, 645, 682
Sau3AI	GATC	4 cut(s)	216, 387, 459, 706
ScrFI	CCNGG	1 cut(s)	77
SfaNI	GCATC	1 cut(s)	190
SfcI	CTRYAG	1 cut(s)	754
Sfr274I	CTCGAG	1 cut(s)	473
SfuI	TTCGAA	1 cut(s)	146
SlaI	CTCGAG	1 cut(s)	473
SmiMI	CAYNNNNRTG	1 cut(s)	294
SmlI	CTYRAG	2 cut(s)	444, 473
SmoI	CTYRAG	2 cut(s)	444, 473
Sse9I	AATT	4 cut(s)	347, 621, 693, 700
SsiI	CCGC	1 cut(s)	644
SspMI	CTAG	1 cut(s)	392
StyD4I	CCNGG	1 cut(s)	75
StyI	CCWWGG	1 cut(s)	724
TaaI	ACNGT	1 cut(s)	336
TaiI	ACGT	1 cut(s)	154
TaqI	TCGA	4 cut(s)	114, 146, 154, 474
TasI	AATT	4 cut(s)	347, 621, 693, 700
TauI	GCSGC	1 cut(s)	647
TfiI	GAWTC	4 cut(s)	97, 111, 359, 431
Tru1I	TTAA	2 cut(s)	620, 747
Tru9I	TTAA	2 cut(s)	620, 747
TscAI	CASTG	2 cut(s)	219, 341
TseI	GCWGC	2 cut(s)	343, 681
TspDTI	ATGAA	4 cut(s)	119, 372, 508, 677
TspGWI	ACGGA	1 cut(s)	421
TspRI	CASTG	2 cut(s)	219, 341
Tth111I	GACNNNGTC	1 cut(s)	62
Van91I	CCANNNNNTGG	1 cut(s)	82
VspI	ATTAAT	1 cut(s)	747
XceI	RCATGY	4 cut(s)	40, 268, 299, 739
XhoI	CTCGAG	1 cut(s)	473
XspI	CTAG	1 cut(s)	392

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.