Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0000758

Physical Location & Seq

Genomic Coordinates Reverse (-)

24786425 .. 24794555

Gene Structure 8131 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g23970.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGGCTGAAGTGGAACAATATGTGCAGCACTTGAAGCATGAATCAGCTACTATGGCCAAGAAGATAGAGATCCTAGAAGCTTCTCAACGGAAGTATTCGGGAAATGGTTTGGATTTTTGCTCTGTTGAAGAACTCCAAGAGATCAGTAGCCAGCTGGGACGAAGCTTATGCAGCATAACAGAGAGGAAGGCTCAATTATACATGGAGCAGCTAGAACAACTTAAGGGAAAGGAGAGGTTCCTGTTACAAGAGAATGCGCAGTTATGTGAAGAGTGTGGTGCAAAGCCGTTGATGGAGTTTTCAGCTCAAAGAGAAAGAGCTTTTGCTCCTGCACGCTGTGAAAAAGCAGGAGCTTGCTTCTGCTTATGTAAGCTACAGGGGCCAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0007568 GO:0008150 GO:0009791 GO:0009838 GO:0009889 GO:0009908 GO:0009909 GO:0010150 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048437 GO:0048580 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080187 GO:0090567 GO:0090693 GO:0099402 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

130

Amino Acids

14.62

Weight (kDa)

6.16

Isoelectric Point (pI)

56.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000758)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165
fragaria_vesca	FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740
malus_domestica	MD00G1004400.v1.1 MD00G1004600.v1.1 MD01G1193300.v1.1 MD01G1193500.v1.1 MD01G1193600.v1.1
prunus_persica	Prupe.2G287500_v2.0.a1
pyrus_communis	pycom01g20400 pycom01g20410 pycom07g23970
rosa_chinensis	RchiOBHm_Chr1g0376251 RchiOBHm_Chr1g0376271 RchiOBHm_Chr1g0376291
rosa_laevigata	RLG00000026614 RLG00000026615 RLG00000026616
rosa_multiflora	Rmu_co8488767.1_g000001 Rmu_ssc0000116.1_g000059 Rmu_ssc0000116.1_g000060
rosa_roxburghii	Rroxscaffold_4G00282230 Rroxscaffold_4G00282240 Rroxscaffold_4G00282270
rosa_rugosa	Rorug01G0394900 Rorug01G0395000
rosa_samantha	Rh1AG406300 Rh1AG406400 Rh1BG370100 Rh1BG370400 Rh1CG383000 Rh1CG383100 Rh1CG383200 Rh1DG399900 Rh1DG400200
rosa_wichuraiana	Rw1G036050 Rw1G036060 Rw1G036070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	258
AclWI	GGATC	1 cut(s)	64
AcoI	YGGCCR	1 cut(s)	54
AcuI	CTGAAG	1 cut(s)	27
AdeI	CACNNNGTG	1 cut(s)	338
AflII	CTTAAG	1 cut(s)	221
AgsI	TTSAA	2 cut(s)	34, 128
AluBI	AGCT	9 cut(s)	47, 80, 154, 165, 211, 305, 320, 353, 373
AluI	AGCT	9 cut(s)	47, 80, 154, 165, 211, 305, 320, 353, 373
AlwI	GGATC	1 cut(s)	64
AoxI	GGCC	2 cut(s)	54, 380
ApeKI	GCWGC	3 cut(s)	25, 171, 208
AspLEI	GCGC	1 cut(s)	259
AspS9I	GGNCC	1 cut(s)	380
BalI	TGGCCA	1 cut(s)	56
BbvI	GCAGC	3 cut(s)	37, 183, 220
BccI	CCATC	1 cut(s)	286
BceAI	ACGGC	1 cut(s)	271
BcgI	CGANNNNNNTGC	2 cut(s)	150, 184
BfaI	CTAG	2 cut(s)	74, 212
BfmI	CTRYAG	1 cut(s)	374
BfrI	CTTAAG	1 cut(s)	221
BisI	GCNGC	3 cut(s)	26, 172, 209
BlsI	GCNGC	3 cut(s)	27, 173, 210
BmgT120I	GGNCC	1 cut(s)	380
BmiI	GGNNCC	2 cut(s)	239, 381
BplI	GAGNNNNNCTC	2 cut(s)	175, 207
BsaBI	GATNNNNATC	1 cut(s)	68
Bse8I	GATNNNNATC	1 cut(s)	68
BseJI	GATNNNNATC	1 cut(s)	68
BseXI	GCAGC	3 cut(s)	37, 183, 220
BseYI	CCCAGC	1 cut(s)	154
BsgI	GTGCAG	2 cut(s)	44, 315
BshFI	GGCC	2 cut(s)	56, 382
BslFI	GGGAC	1 cut(s)	171
BsmFI	GGGAC	1 cut(s)	171
BsmI	GAATGC	1 cut(s)	259
BsnI	GGCC	2 cut(s)	56, 382
Bsp143I	GATC	2 cut(s)	69, 141
BspANI	GGCC	2 cut(s)	56, 382
BspLI	GGNNCC	2 cut(s)	239, 381
BspPI	GGATC	1 cut(s)	64
BspTI	CTTAAG	1 cut(s)	221
BssMI	GATC	2 cut(s)	69, 141
Bst6I	CTCTTC	1 cut(s)	264
BstAFI	CTTAAG	1 cut(s)	221
BstC8I	GCNNGC	3 cut(s)	152, 334, 355
BstHHI	GCGC	1 cut(s)	259
BstKTI	GATC	2 cut(s)	72, 144
BstMBI	GATC	2 cut(s)	69, 141
BstMWI	GCNNNNNNNGC	4 cut(s)	34, 53, 171, 379
BstSFI	CTRYAG	1 cut(s)	374
BstV1I	GCAGC	3 cut(s)	37, 183, 220
BstX2I	RGATCY	1 cut(s)	69
BstYI	RGATCY	1 cut(s)	69
BsuRI	GGCC	2 cut(s)	56, 382
Cac8I	GCNNGC	3 cut(s)	152, 334, 355
CfoI	GCGC	1 cut(s)	259
Cfr13I	GGNCC	1 cut(s)	380
CviAII	CATG	2 cut(s)	38, 202
DpnI	GATC	2 cut(s)	71, 143
DpnII	GATC	2 cut(s)	69, 141
DraIII	CACNNNGTG	1 cut(s)	338
EaeI	YGGCCR	1 cut(s)	54
Eam1104I	CTCTTC	1 cut(s)	264
EarI	CTCTTC	1 cut(s)	264
Eco57I	CTGAAG	1 cut(s)	27
FaeI	CATG	2 cut(s)	41, 205
FaiI	YATR	9 cut(s)	21, 39, 53, 169, 176, 199, 203, 265, 367
FaqI	GGGAC	1 cut(s)	171
FatI	CATG	2 cut(s)	37, 201
Fnu4HI	GCNGC	3 cut(s)	26, 172, 209
Fsp4HI	GCNGC	3 cut(s)	26, 172, 209
FspBI	CTAG	2 cut(s)	74, 212
FspI	TGCGCA	1 cut(s)	258
GlaI	GCGC	1 cut(s)	258
GluI	GCNGC	3 cut(s)	26, 172, 209
GsaI	CCCAGC	1 cut(s)	158
HaeIII	GGCC	2 cut(s)	56, 382
HhaI	GCGC	1 cut(s)	259
Hin1II	CATG	2 cut(s)	41, 205
Hin6I	GCGC	1 cut(s)	257
HinP1I	GCGC	1 cut(s)	257
HindIII	AAGCTT	2 cut(s)	78, 163
HinfI	GANTC	1 cut(s)	41
Hpy188III	TCNNGA	1 cut(s)	99
HpyAV	CCTTC	1 cut(s)	181
HpyCH4V	TGCA	4 cut(s)	25, 171, 281, 332
HpyF10VI	GCNNNNNNNGC	4 cut(s)	34, 53, 171, 379
Hsp92II	CATG	2 cut(s)	41, 205
HspAI	GCGC	1 cut(s)	257
Kzo9I	GATC	2 cut(s)	69, 141
LmnI	GCTCC	3 cut(s)	205, 331, 350
LpnPI	CCDG	6 cut(s)	140, 164, 254, 333, 342, 362
Lsp1109I	GCAGC	3 cut(s)	37, 183, 220
MaeI	CTAG	2 cut(s)	74, 212
MaeIII	GTNAC	1 cut(s)	243
MalI	GATC	2 cut(s)	71, 143
MboI	GATC	2 cut(s)	69, 141
MboII	GAAGA	3 cut(s)	73, 140, 281
MflI	RGATCY	1 cut(s)	69
MlsI	TGGCCA	1 cut(s)	56
MluCI	AATT	1 cut(s)	194
MluNI	TGGCCA	1 cut(s)	56
MnlI	CCTC	2 cut(s)	177, 228
Mox20I	TGGCCA	1 cut(s)	56
MscI	TGGCCA	1 cut(s)	56
MseI	TTAA	1 cut(s)	222
Msp20I	TGGCCA	1 cut(s)	56
MspA1I	CMGCKG	1 cut(s)	154
MspCI	CTTAAG	1 cut(s)	221
Mva1269I	GAATGC	1 cut(s)	259
MwoI	GCNNNNNNNGC	4 cut(s)	34, 53, 171, 379
NdeII	GATC	2 cut(s)	69, 141
NlaIII	CATG	2 cut(s)	41, 205
NlaIV	GGNNCC	2 cut(s)	239, 381
NsbI	TGCGCA	1 cut(s)	258
PctI	GAATGC	1 cut(s)	259
PfeI	GAWTC	1 cut(s)	41
PkrI	GCNGC	3 cut(s)	27, 173, 210
PspFI	CCCAGC	1 cut(s)	154
PspN4I	GGNNCC	2 cut(s)	239, 381
PspPI	GGNCC	1 cut(s)	380
PsuI	RGATCY	1 cut(s)	69
PvuII	CAGCTG	1 cut(s)	154
SaqAI	TTAA	1 cut(s)	222
SatI	GCNGC	3 cut(s)	26, 172, 209
Sau3AI	GATC	2 cut(s)	69, 141
Sau96I	GGNCC	1 cut(s)	380
SfcI	CTRYAG	1 cut(s)	374
SmlI	CTYRAG	1 cut(s)	221
SmoI	CTYRAG	1 cut(s)	221
Sse9I	AATT	1 cut(s)	194
SspMI	CTAG	2 cut(s)	74, 212
TasI	AATT	1 cut(s)	194
TfiI	GAWTC	1 cut(s)	41
Tru1I	TTAA	1 cut(s)	222
Tru9I	TTAA	1 cut(s)	222
TseI	GCWGC	3 cut(s)	25, 171, 208
TspDTI	ATGAA	1 cut(s)	54
TspGWI	ACGGA	1 cut(s)	103
Vha464I	CTTAAG	1 cut(s)	221
XspI	CTAG	2 cut(s)	74, 212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.