Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0000758

Physical Location & Seq

Genomic Coordinates Reverse (-)

28315091 .. 28320984

Gene Structure 5894 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G287500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGTGAGAGGGAAGATTGAGATGAAAAGAATTGAAAATGCCACAAGCCGGCAAGTGACCTTCTCCAAACGTCGAAATGGGTTGTTGAAGAAAGCCTTTGAGCTTTCAGTTCTCTGCGATGCTCAAGTTTCCGTCATCATCTTCTCTCAGAAAGGCAGGCTATATGAGTTCTCCAGCTCTGACATGCAAGATACTATAAAACGATACCACAAACATGCAAAGGCTGGGCAAACCAACAAGATTGAAGTGGAAGAATATGTGGAGCAATTGAAGCATGAATCGACTGCTATGGCCAAGAAGATAGAGAACCTAGAAGCTTCTCAACGGAAGCTTTTGGGACATGGCTTGGACTCTTGCTCTGTCGAGGAGCTCCAAGAGATCACTGGCCAGTTGGAGCGAAGTGTACGCAAAATAAGAGAGAGAAAGGCTCATTTATTTGCGGAGCAGATGGAACAATTAAGGGCAAAGGAGAGGCTCCTCATAGAAGAGAATGCAAAGTTAAGTGAAGAGTTTGGTGCACAGCCGAGGCAGCTGCTGCTGCAGCAGCAGCTTTCAGTTGAAGAAAAAGGAGCTGTGAGCTACTGGAGTCAAAGTAGCCTGAGTTCTGAGGTGGAGACTGAATTGTTCATCGGACCGCCGGTAACGCGCTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0007568 GO:0008150 GO:0009791 GO:0009838 GO:0009889 GO:0009908 GO:0009909 GO:0010150 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048437 GO:0048580 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080187 GO:0090567 GO:0090693 GO:0099402 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

218

Amino Acids

24.93

Weight (kDa)

8.68

Isoelectric Point (pI)

60.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000758)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165
fragaria_vesca	FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740
malus_domestica	MD00G1004400.v1.1 MD00G1004600.v1.1 MD01G1193300.v1.1 MD01G1193500.v1.1 MD01G1193600.v1.1
prunus_persica	Prupe.2G287500_v2.0.a1
pyrus_communis	pycom01g20400 pycom01g20410 pycom07g23970
rosa_chinensis	RchiOBHm_Chr1g0376251 RchiOBHm_Chr1g0376271 RchiOBHm_Chr1g0376291
rosa_laevigata	RLG00000026614 RLG00000026615 RLG00000026616
rosa_multiflora	Rmu_co8488767.1_g000001 Rmu_ssc0000116.1_g000059 Rmu_ssc0000116.1_g000060
rosa_roxburghii	Rroxscaffold_4G00282230 Rroxscaffold_4G00282240 Rroxscaffold_4G00282270
rosa_rugosa	Rorug01G0394900 Rorug01G0395000
rosa_samantha	Rh1AG406300 Rh1AG406400 Rh1BG370100 Rh1BG370400 Rh1CG383000 Rh1CG383100 Rh1CG383200 Rh1DG399900 Rh1DG400200
rosa_wichuraiana	Rw1G036050 Rw1G036060 Rw1G036070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	646
AciI	CCGC	2 cut(s)	440, 635
AcoI	YGGCCR	2 cut(s)	291, 385
AfaI	GTAC	1 cut(s)	405
AfiI	CCNNNNNNNGG	1 cut(s)	48
AgsI	TTSAA	5 cut(s)	35, 88, 245, 271, 560
AluBI	AGCT	9 cut(s)	103, 177, 317, 331, 370, 532, 550, 572, 579
AluI	AGCT	9 cut(s)	103, 177, 317, 331, 370, 532, 550, 572, 579
Alw21I	GWGCWC	2 cut(s)	372, 520
Alw26I	GTCTC	1 cut(s)	608
Alw44I	GTGCAC	1 cut(s)	516
AlwNI	CAGNNNCTG	1 cut(s)	535
AoxI	GGCC	2 cut(s)	291, 385
ApaLI	GTGCAC	1 cut(s)	516
ApeKI	GCWGC	7 cut(s)	529, 532, 535, 538, 541, 544, 547
AspLEI	GCGC	1 cut(s)	648
AspS9I	GGNCC	1 cut(s)	632
AsuHPI	GGTGA	1 cut(s)	16
AvaII	GGWCC	1 cut(s)	632
BaeGI	GKGCMC	1 cut(s)	520
BalI	TGGCCA	2 cut(s)	293, 387
BanII	GRGCYC	1 cut(s)	372
Bbv12I	GWGCWC	2 cut(s)	372, 520
BbvI	GCAGC	7 cut(s)	519, 522, 525, 541, 553, 556, 559
BccI	CCATC	1 cut(s)	442
BcgI	CGANNNNNNTGC	2 cut(s)	514, 548
BcoDI	GTCTC	1 cut(s)	608
BfaI	CTAG	1 cut(s)	311
BfmI	CTRYAG	1 cut(s)	539
BisI	GCNGC	7 cut(s)	530, 533, 536, 539, 542, 545, 548
BlsI	GCNGC	7 cut(s)	531, 534, 537, 540, 543, 546, 549
Bme18I	GGWCC	1 cut(s)	632
BmgT120I	GGNCC	1 cut(s)	632
BmiI	GGNNCC	1 cut(s)	476
BmsI	GCATC	1 cut(s)	109
BplI	GAGNNNNNCTC	2 cut(s)	412, 444
BpmI	CTGGAG	2 cut(s)	157, 604
BpuEI	CTTGAG	1 cut(s)	108
BsaJI	CCNNGG	1 cut(s)	524
BsaXI	ACNNNNNCTCC	2 cut(s)	577, 607
Bsc4I	CCNNNNNNNGG	1 cut(s)	48
Bse118I	RCCGGY	2 cut(s)	48, 637
Bse1I	ACTGG	3 cut(s)	388, 388, 587
BseDI	CCNNGG	1 cut(s)	524
BseLI	CCNNNNNNNGG	1 cut(s)	48
BseMII	CTCAG	3 cut(s)	161, 590, 597
BseNI	ACTGG	3 cut(s)	388, 388, 587
BseRI	GAGGAG	2 cut(s)	380, 467
BseSI	GKGCMC	1 cut(s)	520
BseXI	GCAGC	7 cut(s)	519, 522, 525, 541, 553, 556, 559
BseYI	CCCAGC	1 cut(s)	224
Bsh1236I	CGCG	1 cut(s)	646
BshFI	GGCC	2 cut(s)	293, 387
BsiHKAI	GWGCWC	2 cut(s)	372, 520
BsiSI	CCGG	2 cut(s)	49, 638
BslFI	GGGAC	1 cut(s)	351
BslI	CCNNNNNNNGG	1 cut(s)	48
BsmAI	GTCTC	1 cut(s)	608
BsmFI	GGGAC	1 cut(s)	351
BsmI	GAATGC	1 cut(s)	496
BsnI	GGCC	2 cut(s)	293, 387
Bsp1286I	GDGCHC	2 cut(s)	372, 520
Bsp143I	GATC	1 cut(s)	378
BspACI	CCGC	2 cut(s)	440, 635
BspANI	GGCC	2 cut(s)	293, 387
BspCNI	CTCAG	3 cut(s)	160, 591, 598
BspFNI	CGCG	1 cut(s)	646
BspLI	GGNNCC	1 cut(s)	476
BspMAI	CTGCAG	1 cut(s)	543
BsrFI	RCCGGY	2 cut(s)	48, 637
BsrI	ACTGG	3 cut(s)	388, 388, 587
BssAI	RCCGGY	2 cut(s)	48, 637
BssECI	CCNNGG	1 cut(s)	524
BssMI	GATC	1 cut(s)	378
Bst6I	CTCTTC	2 cut(s)	480, 501
BstAPI	GCANNNNNTGC	1 cut(s)	535
BstC8I	GCNNGC	2 cut(s)	50, 158
BstDEI	CTNAG	3 cut(s)	147, 599, 606
BstFNI	CGCG	1 cut(s)	646
BstHHI	GCGC	1 cut(s)	648
BstKTI	GATC	1 cut(s)	381
BstMAI	GTCTC	1 cut(s)	608
BstMBI	GATC	1 cut(s)	378
BstMWI	GCNNNNNNNGC	8 cut(s)	271, 529, 535, 538, 541, 544, 547, 643
BstNSI	RCATGY	2 cut(s)	187, 218
BstSFI	CTRYAG	1 cut(s)	539
BstSLI	GKGCMC	1 cut(s)	520
BstUI	CGCG	1 cut(s)	646
BstV1I	GCAGC	7 cut(s)	519, 522, 525, 541, 553, 556, 559
BsuRI	GGCC	2 cut(s)	293, 387
BtgZI	GCGATG	1 cut(s)	132
BtsIMutI	CAGTG	1 cut(s)	381
Cac8I	GCNNGC	2 cut(s)	50, 158
CaiI	CAGNNNCTG	1 cut(s)	535
CfoI	GCGC	1 cut(s)	648
Cfr10I	RCCGGY	2 cut(s)	48, 637
Cfr13I	GGNCC	1 cut(s)	632
CpoI	CGGWCCG	1 cut(s)	632
Csp6I	GTAC	1 cut(s)	404
CspI	CGGWCCG	1 cut(s)	632
CviAII	CATG	4 cut(s)	184, 215, 275, 341
CviQI	GTAC	1 cut(s)	404
DdeI	CTNAG	3 cut(s)	147, 599, 606
DpnI	GATC	1 cut(s)	380
DpnII	GATC	1 cut(s)	378
EaeI	YGGCCR	2 cut(s)	291, 385
Eam1104I	CTCTTC	2 cut(s)	480, 501
EarI	CTCTTC	2 cut(s)	480, 501
Ecl136II	GAGCTC	1 cut(s)	370
Eco24I	GRGCYC	1 cut(s)	372
Eco47I	GGWCC	1 cut(s)	632
Eco53kI	GAGCTC	1 cut(s)	370
EcoICRI	GAGCTC	1 cut(s)	370
EcoT38I	GRGCYC	1 cut(s)	372
FaeI	CATG	4 cut(s)	187, 218, 278, 344
FalI	AAGNNNNNCTT	2 cut(s)	80, 112
FaqI	GGGAC	1 cut(s)	351
FatI	CATG	4 cut(s)	183, 214, 274, 340
Fnu4HI	GCNGC	7 cut(s)	530, 533, 536, 539, 542, 545, 548
FriOI	GRGCYC	1 cut(s)	372
Fsp4HI	GCNGC	7 cut(s)	530, 533, 536, 539, 542, 545, 548
FspBI	CTAG	1 cut(s)	311
GlaI	GCGC	1 cut(s)	647
GluI	GCNGC	7 cut(s)	530, 533, 536, 539, 542, 545, 548
GsaI	CCCAGC	1 cut(s)	228
GsuI	CTGGAG	2 cut(s)	157, 604
HaeIII	GGCC	2 cut(s)	293, 387
HapII	CCGG	2 cut(s)	49, 638
HhaI	GCGC	1 cut(s)	648
Hin1II	CATG	4 cut(s)	187, 218, 278, 344
Hin6I	GCGC	1 cut(s)	646
HinP1I	GCGC	1 cut(s)	646
HindIII	AAGCTT	2 cut(s)	315, 329
HinfI	GANTC	3 cut(s)	278, 350, 586
HpaII	CCGG	2 cut(s)	49, 638
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	2 cut(s)	404, 518
Hpy188I	TCNGA	4 cut(s)	150, 181, 607, 632
Hpy8I	GTNNAC	2 cut(s)	404, 518
Hpy99I	CGWCG	1 cut(s)	75
HpyAV	CCTTC	1 cut(s)	70
HpyCH4IV	ACGT	1 cut(s)	70
HpyCH4V	TGCA	5 cut(s)	187, 218, 494, 518, 541
HpyF10VI	GCNNNNNNNGC	8 cut(s)	271, 529, 535, 538, 541, 544, 547, 643
HpyF3I	CTNAG	3 cut(s)	147, 599, 606
HpySE526I	ACGT	1 cut(s)	70
Hsp92II	CATG	4 cut(s)	187, 218, 278, 344
HspAI	GCGC	1 cut(s)	646
KroI	GCCGGC	1 cut(s)	48
KroNI	GCCGGC	1 cut(s)	50
Kzo9I	GATC	1 cut(s)	378
LmnI	GCTCC	7 cut(s)	262, 367, 375, 394, 442, 480, 569
LpnPI	CCDG	8 cut(s)	62, 142, 187, 210, 369, 401, 568, 611
Lsp1109I	GCAGC	7 cut(s)	519, 522, 525, 541, 553, 556, 559
LweI	GCATC	1 cut(s)	109
MaeI	CTAG	1 cut(s)	311
MaeII	ACGT	1 cut(s)	70
MaeIII	GTNAC	2 cut(s)	55, 640
MalI	GATC	1 cut(s)	380
MboI	GATC	1 cut(s)	378
MboII	GAAGA	8 cut(s)	25, 100, 133, 263, 310, 497, 518, 572
MfeI	CAATTG	1 cut(s)	266
MhlI	GDGCHC	2 cut(s)	372, 520
MlsI	TGGCCA	2 cut(s)	293, 387
MluCI	AATT	4 cut(s)	30, 266, 455, 620
MluNI	TGGCCA	2 cut(s)	293, 387
MlyI	GAGTC	2 cut(s)	344, 595
MmeI	TCCRAC	1 cut(s)	372
MnlI	CCTC	5 cut(s)	358, 465, 488, 519, 601
Mox20I	TGGCCA	2 cut(s)	293, 387
MroNI	GCCGGC	1 cut(s)	48
MscI	TGGCCA	2 cut(s)	293, 387
MseI	TTAA	2 cut(s)	458, 500
MslI	CAYNNNNRTG	1 cut(s)	213
Msp20I	TGGCCA	2 cut(s)	293, 387
MspA1I	CMGCKG	1 cut(s)	532
MspI	CCGG	2 cut(s)	49, 638
MunI	CAATTG	1 cut(s)	266
Mva1269I	GAATGC	1 cut(s)	496
MvnI	CGCG	1 cut(s)	646
MwoI	GCNNNNNNNGC	8 cut(s)	271, 529, 535, 538, 541, 544, 547, 643
NaeI	GCCGGC	1 cut(s)	50
NdeII	GATC	1 cut(s)	378
NgoMIV	GCCGGC	1 cut(s)	48
NlaIII	CATG	4 cut(s)	187, 218, 278, 344
NlaIV	GGNNCC	1 cut(s)	476
NmeAIII	GCCGAG	1 cut(s)	549
NmuCI	GTSAC	1 cut(s)	55
NspI	RCATGY	2 cut(s)	187, 218
PctI	GAATGC	1 cut(s)	496
PdiI	GCCGGC	1 cut(s)	50
PfeI	GAWTC	1 cut(s)	278
PkrI	GCNGC	7 cut(s)	531, 534, 537, 540, 543, 546, 549
PleI	GAGTC	2 cut(s)	344, 594
PpsI	GAGTC	2 cut(s)	344, 594
Psp124BI	GAGCTC	1 cut(s)	372
PspFI	CCCAGC	1 cut(s)	224
PspN4I	GGNNCC	1 cut(s)	476
PspPI	GGNCC	1 cut(s)	632
PsrI	GAACNNNNNNTAC	2 cut(s)	586, 618
PstI	CTGCAG	1 cut(s)	543
PstNI	CAGNNNCTG	1 cut(s)	535
PvuII	CAGCTG	1 cut(s)	532
RsaI	GTAC	1 cut(s)	405
RsaNI	GTAC	1 cut(s)	404
RseI	CAYNNNNRTG	1 cut(s)	213
Rsr2I	CGGWCCG	1 cut(s)	632
RsrII	CGGWCCG	1 cut(s)	632
SacI	GAGCTC	1 cut(s)	372
SaqAI	TTAA	2 cut(s)	458, 500
SatI	GCNGC	7 cut(s)	530, 533, 536, 539, 542, 545, 548
Sau3AI	GATC	1 cut(s)	378
Sau96I	GGNCC	1 cut(s)	632
SchI	GAGTC	2 cut(s)	344, 595
SduI	GDGCHC	2 cut(s)	372, 520
SfaNI	GCATC	1 cut(s)	109
SfcI	CTRYAG	1 cut(s)	539
SinI	GGWCC	1 cut(s)	632
SmiMI	CAYNNNNRTG	1 cut(s)	213
SmlI	CTYRAG	1 cut(s)	123
SmoI	CTYRAG	1 cut(s)	123
Sse9I	AATT	4 cut(s)	30, 266, 455, 620
SsiI	CCGC	2 cut(s)	440, 635
SspMI	CTAG	1 cut(s)	311
SstI	GAGCTC	1 cut(s)	372
TaiI	ACGT	1 cut(s)	73
TaqI	TCGA	3 cut(s)	73, 281, 363
TasI	AATT	4 cut(s)	30, 266, 455, 620
TfiI	GAWTC	1 cut(s)	278
Tru1I	TTAA	2 cut(s)	458, 500
Tru9I	TTAA	2 cut(s)	458, 500
TscAI	CASTG	1 cut(s)	388
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	7 cut(s)	529, 532, 535, 538, 541, 544, 547
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	3 cut(s)	38, 291, 616
TspGWI	ACGGA	2 cut(s)	121, 340
TspRI	CASTG	1 cut(s)	388
VneI	GTGCAC	1 cut(s)	516
VpaK11BI	GGWCC	1 cut(s)	632
XceI	RCATGY	2 cut(s)	187, 218
XcmI	CCANNNNNNNNNTGG	1 cut(s)	380
XspI	CTAG	1 cut(s)	311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.