Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0000758

Physical Location & Seq

Genomic Coordinates Reverse (-)

18844613 .. 18847776

Gene Structure 3164 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g20410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGCAAAAGATCGATGAGCAAACCAACAAGGTTGAAGTGGAACAACATGTGCAGCACTTGAAGCATGAATCAGCTATTATGGCCAAGAAGATAGAGATCGATCTAGAAGCTACTCAAAGGAAGCTTTTGGGAAATGATTTGGATTCTTGCCTTGTTGAAGAACTCCAAGAGATGAGTAGCCAGCTTGAACGAAGTTTACGTAGCATAAGAGAGAGAAAGGCACAATTATTCATGGAGCAGATGGAACAACTAAAGGCAAAGGAGACTCTCCTCTTACAAGAGAACGCAAAATTACGTAAACAGAGTGGTGCAAAGCTGTGGATGGAGCATTCAGCTCAAGAAAAAGGAGCTTCTACTTCTTTAAGCTATGAAAAAGCAGGAGTTTCTGCTTCTGTAAACTACAGGAGCCAAGGTAGCATGAGTTCTGAGGTGGAGACCGAATTGTTCATTGGACCGCCAATAATGCGCGCTGTTGGTGCATCACAGCCTAGGTCAACATACATCAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0007568 GO:0008150 GO:0009791 GO:0009838 GO:0009889 GO:0009908 GO:0009909 GO:0010150 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048437 GO:0048580 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080187 GO:0090567 GO:0090693 GO:0099402 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

170

Amino Acids

19.21

Weight (kDa)

6.45

Isoelectric Point (pI)

58.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
K-box	PF01486	14 - 101	2.9e-20	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000758)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165
fragaria_vesca	FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740
malus_domestica	MD00G1004400.v1.1 MD00G1004600.v1.1 MD01G1193300.v1.1 MD01G1193500.v1.1 MD01G1193600.v1.1
prunus_persica	Prupe.2G287500_v2.0.a1
pyrus_communis	pycom01g20400 pycom01g20410 pycom07g23970
rosa_chinensis	RchiOBHm_Chr1g0376251 RchiOBHm_Chr1g0376271 RchiOBHm_Chr1g0376291
rosa_laevigata	RLG00000026614 RLG00000026615 RLG00000026616
rosa_multiflora	Rmu_co8488767.1_g000001 Rmu_ssc0000116.1_g000059 Rmu_ssc0000116.1_g000060
rosa_roxburghii	Rroxscaffold_4G00282230 Rroxscaffold_4G00282240 Rroxscaffold_4G00282270
rosa_rugosa	Rorug01G0394900 Rorug01G0395000
rosa_samantha	Rh1AG406300 Rh1AG406400 Rh1BG370100 Rh1BG370400 Rh1CG383000 Rh1CG383100 Rh1CG383200 Rh1DG399900 Rh1DG400200
rosa_wichuraiana	Rw1G036050 Rw1G036060 Rw1G036070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	468
AciI	CCGC	1 cut(s)	455
AcoI	YGGCCR	1 cut(s)	81
AflIII	ACRYGT	1 cut(s)	46
AgsI	TTSAA	4 cut(s)	35, 61, 158, 188
AjuI	GAANNNNNNNTTGG	2 cut(s)	432, 464
AluBI	AGCT	8 cut(s)	74, 110, 124, 184, 316, 335, 350, 366
AluI	AGCT	8 cut(s)	74, 110, 124, 184, 316, 335, 350, 366
Alw26I	GTCTC	2 cut(s)	257, 428
AoxI	GGCC	1 cut(s)	81
ApeKI	GCWGC	1 cut(s)	52
AspA2I	CCTAGG	1 cut(s)	488
AspLEI	GCGC	2 cut(s)	468, 470
AspS9I	GGNCC	1 cut(s)	452
AvaII	GGWCC	1 cut(s)	452
AvrII	CCTAGG	1 cut(s)	488
BalI	TGGCCA	1 cut(s)	83
BbvI	GCAGC	1 cut(s)	64
BccI	CCATC	2 cut(s)	235, 316
BcoDI	GTCTC	2 cut(s)	257, 428
BfaI	CTAG	2 cut(s)	104, 489
BfmI	CTRYAG	1 cut(s)	400
BisI	GCNGC	1 cut(s)	53
BlnI	CCTAGG	1 cut(s)	488
BlsI	GCNGC	1 cut(s)	54
Bme18I	GGWCC	1 cut(s)	452
BmgT120I	GGNCC	1 cut(s)	452
BmiI	GGNNCC	1 cut(s)	407
BmsI	GCATC	1 cut(s)	488
BpuEI	CTTGAG	1 cut(s)	321
Bsa29I	ATCGAT	2 cut(s)	12, 99
BsaAI	YACGTR	2 cut(s)	200, 296
BsaBI	GATNNNNATC	1 cut(s)	95
BsaI	GGTCTC	1 cut(s)	428
BsaJI	CCNNGG	2 cut(s)	409, 488
BsaXI	ACNNNNNCTCC	2 cut(s)	397, 427
Bse8I	GATNNNNATC	1 cut(s)	95
BseCI	ATCGAT	2 cut(s)	12, 99
BseDI	CCNNGG	2 cut(s)	409, 488
BseGI	GGATG	1 cut(s)	327
BseJI	GATNNNNATC	1 cut(s)	95
BseMII	CTCAG	1 cut(s)	417
BsePI	GCGCGC	1 cut(s)	466
BseRI	GAGGAG	1 cut(s)	260
BseXI	GCAGC	1 cut(s)	64
BsgI	GTGCAG	1 cut(s)	71
Bsh1236I	CGCG	1 cut(s)	468
BshFI	GGCC	1 cut(s)	83
BshVI	ATCGAT	2 cut(s)	12, 99
BsmAI	GTCTC	2 cut(s)	257, 428
BsmI	GAATGC	1 cut(s)	328
BsnI	GGCC	1 cut(s)	83
Bso31I	GGTCTC	1 cut(s)	428
Bsp143I	GATC	3 cut(s)	9, 96, 100
BspACI	CCGC	1 cut(s)	455
BspANI	GGCC	1 cut(s)	83
BspCNI	CTCAG	1 cut(s)	418
BspDI	ATCGAT	2 cut(s)	12, 99
BspFNI	CGCG	1 cut(s)	468
BspLI	GGNNCC	1 cut(s)	407
BspTNI	GGTCTC	1 cut(s)	428
BssECI	CCNNGG	2 cut(s)	409, 488
BssHII	GCGCGC	1 cut(s)	466
BssMI	GATC	3 cut(s)	9, 96, 100
BssT1I	CCWWGG	2 cut(s)	409, 488
BstBAI	YACGTR	2 cut(s)	200, 296
BstC8I	GCNNGC	2 cut(s)	182, 468
BstDEI	CTNAG	1 cut(s)	426
BstF5I	GGATG	1 cut(s)	327
BstFNI	CGCG	1 cut(s)	468
BstHHI	GCGC	2 cut(s)	468, 470
BstKTI	GATC	3 cut(s)	12, 99, 103
BstMAI	GTCTC	2 cut(s)	257, 428
BstMBI	GATC	3 cut(s)	9, 96, 100
BstMWI	GCNNNNNNNGC	5 cut(s)	61, 80, 414, 463, 476
BstNSI	RCATGY	1 cut(s)	50
BstSFI	CTRYAG	1 cut(s)	400
BstSNI	TACGTA	2 cut(s)	200, 296
BstUI	CGCG	1 cut(s)	468
BstV1I	GCAGC	1 cut(s)	64
Bsu15I	ATCGAT	2 cut(s)	12, 99
BsuRI	GGCC	1 cut(s)	83
BsuTUI	ATCGAT	2 cut(s)	12, 99
BtsCI	GGATG	1 cut(s)	327
Cac8I	GCNNGC	2 cut(s)	182, 468
CfoI	GCGC	2 cut(s)	468, 470
Cfr13I	GGNCC	1 cut(s)	452
ClaI	ATCGAT	2 cut(s)	12, 99
CviAII	CATG	4 cut(s)	47, 65, 232, 418
DdeI	CTNAG	1 cut(s)	426
DpnI	GATC	3 cut(s)	11, 98, 102
DpnII	GATC	3 cut(s)	9, 96, 100
EaeI	YGGCCR	1 cut(s)	81
Eco105I	TACGTA	2 cut(s)	200, 296
Eco130I	CCWWGG	2 cut(s)	409, 488
Eco31I	GGTCTC	1 cut(s)	428
Eco47I	GGWCC	1 cut(s)	452
EcoT14I	CCWWGG	2 cut(s)	409, 488
ErhI	CCWWGG	2 cut(s)	409, 488
FaeI	CATG	4 cut(s)	50, 68, 235, 421
FaiI	YATR	8 cut(s)	48, 66, 80, 206, 233, 369, 419, 499
FatI	CATG	4 cut(s)	46, 64, 231, 417
Fnu4HI	GCNGC	1 cut(s)	53
FokI	GGATG	1 cut(s)	334
Fsp4HI	GCNGC	1 cut(s)	53
FspBI	CTAG	2 cut(s)	104, 489
GlaI	GCGC	2 cut(s)	467, 469
GluI	GCNGC	1 cut(s)	53
HaeIII	GGCC	1 cut(s)	83
HhaI	GCGC	2 cut(s)	468, 470
Hin1II	CATG	4 cut(s)	50, 68, 235, 421
Hin6I	GCGC	2 cut(s)	466, 468
HinP1I	GCGC	2 cut(s)	466, 468
HincII	GTYRAC	1 cut(s)	495
HindII	GTYRAC	1 cut(s)	495
HindIII	AAGCTT	1 cut(s)	122
HinfI	GANTC	3 cut(s)	68, 143, 265
Hpy166II	GTNNAC	4 cut(s)	197, 299, 397, 495
Hpy188I	TCNGA	2 cut(s)	427, 506
Hpy188III	TCNNGA	2 cut(s)	104, 338
Hpy8I	GTNNAC	4 cut(s)	197, 299, 397, 495
HpyCH4IV	ACGT	2 cut(s)	199, 295
HpyCH4V	TGCA	4 cut(s)	4, 52, 311, 479
HpyF10VI	GCNNNNNNNGC	5 cut(s)	61, 80, 414, 463, 476
HpyF3I	CTNAG	1 cut(s)	426
HpySE526I	ACGT	2 cut(s)	199, 295
Hsp92II	CATG	4 cut(s)	50, 68, 235, 421
HspAI	GCGC	2 cut(s)	466, 468
Kzo9I	GATC	3 cut(s)	9, 96, 100
LmnI	GCTCC	4 cut(s)	235, 325, 347, 405
LpnPI	CCDG	3 cut(s)	194, 363, 388
Lsp1109I	GCAGC	1 cut(s)	64
LweI	GCATC	1 cut(s)	488
MaeI	CTAG	2 cut(s)	104, 489
MaeII	ACGT	2 cut(s)	199, 295
MalI	GATC	3 cut(s)	11, 98, 102
MboI	GATC	3 cut(s)	9, 96, 100
MboII	GAAGA	2 cut(s)	100, 170
MlsI	TGGCCA	1 cut(s)	83
MluCI	AATT	3 cut(s)	224, 290, 440
MluNI	TGGCCA	1 cut(s)	83
MlyI	GAGTC	1 cut(s)	259
MnlI	CCTC	2 cut(s)	281, 421
Mox20I	TGGCCA	1 cut(s)	83
MscI	TGGCCA	1 cut(s)	83
MseI	TTAA	1 cut(s)	362
Msp20I	TGGCCA	1 cut(s)	83
Mva1269I	GAATGC	1 cut(s)	328
MvnI	CGCG	1 cut(s)	468
MwoI	GCNNNNNNNGC	5 cut(s)	61, 80, 414, 463, 476
NdeII	GATC	3 cut(s)	9, 96, 100
NlaIII	CATG	4 cut(s)	50, 68, 235, 421
NlaIV	GGNNCC	1 cut(s)	407
NspI	RCATGY	1 cut(s)	50
PauI	GCGCGC	1 cut(s)	466
PciI	ACATGT	1 cut(s)	46
PcsI	WCGNNNNNNNCGW	1 cut(s)	196
PctI	GAATGC	1 cut(s)	328
PfeI	GAWTC	2 cut(s)	68, 143
PkrI	GCNGC	1 cut(s)	54
PleI	GAGTC	1 cut(s)	259
PpsI	GAGTC	1 cut(s)	259
Ppu21I	YACGTR	2 cut(s)	200, 296
PscI	ACATGT	1 cut(s)	46
PspN4I	GGNNCC	1 cut(s)	407
PspPI	GGNCC	1 cut(s)	452
PsrI	GAACNNNNNNTAC	4 cut(s)	180, 212, 406, 438
PteI	GCGCGC	1 cut(s)	466
SaqAI	TTAA	1 cut(s)	362
SatI	GCNGC	1 cut(s)	53
Sau3AI	GATC	3 cut(s)	9, 96, 100
Sau96I	GGNCC	1 cut(s)	452
SchI	GAGTC	1 cut(s)	259
SfaNI	GCATC	1 cut(s)	488
SfcI	CTRYAG	1 cut(s)	400
SinI	GGWCC	1 cut(s)	452
SmlI	CTYRAG	1 cut(s)	336
SmoI	CTYRAG	1 cut(s)	336
SnaBI	TACGTA	2 cut(s)	200, 296
Sse9I	AATT	3 cut(s)	224, 290, 440
SsiI	CCGC	1 cut(s)	455
SspMI	CTAG	2 cut(s)	104, 489
StyI	CCWWGG	2 cut(s)	409, 488
TaiI	ACGT	2 cut(s)	202, 298
TaqI	TCGA	2 cut(s)	12, 99
TaqII	GACCGA	1 cut(s)	452
TasI	AATT	3 cut(s)	224, 290, 440
TfiI	GAWTC	2 cut(s)	68, 143
Tru1I	TTAA	1 cut(s)	362
Tru9I	TTAA	1 cut(s)	362
TseI	GCWGC	1 cut(s)	52
TspDTI	ATGAA	4 cut(s)	81, 220, 384, 436
VpaK11BI	GGWCC	1 cut(s)	452
XbaI	TCTAGA	1 cut(s)	103
XceI	RCATGY	1 cut(s)	50
XmaJI	CCTAGG	1 cut(s)	488
XspI	CTAG	2 cut(s)	104, 489

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.