Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0000758

Physical Location & Seq

Genomic Coordinates Reverse (-)

29231402 .. 29236197

Gene Structure 4796 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1193300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGAAAAGAATTGAGAATAACACAAGCCGACAAGTGACCTTCTCGAAACGTCGAAAGGGGTTGTTAAAGAAAGCTTATGAGCTTTCGGTTCTTTGCGATGCTGAAGTTGCAGTCATCGTCTTCTCGCAAAAAGGCAGGATCTATGAGTTCTCCAGCTCTGACATGCAACGGACTATAAATCGATACCATAAACATGAAAATGGATCAGGGCCGACCAACAAGGTTGAAGTGGAACAATATGTGCAGCACTTGAAGCATGAATCAGCTATTATAGCCAAGAAGATAGAGATCCTAGAAGCTTCCCAGCGGAAGCTTTTGGGAAATGATCTGGATTCTTGCCCTGTTGAAGAACTCCAAGAGATCAGTAGCCAGCTGGAGCGAAGCTTACGCAGCATAAGTGAGAGAAAGGCTCAATTATACACGGAGCAGATGGAACAACATAAGGCAAGGGAGAGGTTCCTGTTACAAGAGAATGCACAGTTACGTGAAGAGTGTTGTGCGAAGCCGTGGATGGAGTTTTCACCTCAAGAAAAAAGAGCTTCTGCGTCTGTAAGCAATGAAAAAGCAGGAGCTTCTGCTTCTGCTCCGATAAACTACCGGAGCCAAAGTAGCATGAGTTCTGAGGTGGACACCGATTTGCTCATTGGACAGCCAATGGTGCGCGCTGTTGATCGCATCGCAGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0007568 GO:0008150 GO:0009791 GO:0009838 GO:0009889 GO:0009908 GO:0009909 GO:0010150 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048437 GO:0048580 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080187 GO:0090567 GO:0090693 GO:0099402 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

229

Amino Acids

26.02

Weight (kDa)

8.6

Isoelectric Point (pI)

62.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	3 - 50	3.2e-27	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	80 - 164	1.3e-20	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000758)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165
fragaria_vesca	FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740
malus_domestica	MD00G1004400.v1.1 MD00G1004600.v1.1 MD01G1193300.v1.1 MD01G1193500.v1.1 MD01G1193600.v1.1
prunus_persica	Prupe.2G287500_v2.0.a1
pyrus_communis	pycom01g20400 pycom01g20410 pycom07g23970
rosa_chinensis	RchiOBHm_Chr1g0376251 RchiOBHm_Chr1g0376271 RchiOBHm_Chr1g0376291
rosa_laevigata	RLG00000026614 RLG00000026615 RLG00000026616
rosa_multiflora	Rmu_co8488767.1_g000001 Rmu_ssc0000116.1_g000059 Rmu_ssc0000116.1_g000060
rosa_roxburghii	Rroxscaffold_4G00282230 Rroxscaffold_4G00282240 Rroxscaffold_4G00282270
rosa_rugosa	Rorug01G0394900 Rorug01G0395000
rosa_samantha	Rh1AG406300 Rh1AG406400 Rh1BG370100 Rh1BG370400 Rh1CG383000 Rh1CG383100 Rh1CG383200 Rh1DG399900 Rh1DG400200
rosa_wichuraiana	Rw1G036050 Rw1G036060 Rw1G036070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	663
AciI	CCGC	1 cut(s)	307
AclWI	GGATC	3 cut(s)	146, 211, 283
AcuI	CTGAAG	1 cut(s)	123
AgsI	TTSAA	3 cut(s)	227, 253, 347
AlwI	GGATC	3 cut(s)	146, 211, 283
AoxI	GGCC	1 cut(s)	209
ApeKI	GCWGC	2 cut(s)	244, 390
AspLEI	GCGC	2 cut(s)	663, 665
AspS9I	GGNCC	1 cut(s)	209
AsuHPI	GGTGA	1 cut(s)	513
BbsI	GAAGAC	1 cut(s)	112
BbvI	GCAGC	2 cut(s)	256, 402
BccI	CCATC	2 cut(s)	424, 505
BceAI	ACGGC	1 cut(s)	490
BfaI	CTAG	1 cut(s)	293
BisI	GCNGC	2 cut(s)	245, 391
BlsI	GCNGC	2 cut(s)	246, 392
BmgT120I	GGNCC	1 cut(s)	209
BmiI	GGNNCC	2 cut(s)	458, 602
BmsI	GCATC	1 cut(s)	88
BpiI	GAAGAC	1 cut(s)	112
BplI	GAGNNNNNCTC	2 cut(s)	394, 426
BpmI	CTGGAG	2 cut(s)	136, 395
BpuEI	CTTGAG	1 cut(s)	510
Bsa29I	ATCGAT	1 cut(s)	181
BsaAI	YACGTR	1 cut(s)	485
BsaBI	GATNNNNATC	1 cut(s)	287
BsaJI	CCNNGG	1 cut(s)	506
BsaWI	WCCGGW	1 cut(s)	597
BsaXI	ACNNNNNCTCC	2 cut(s)	592, 622
Bse3DI	GCAATG	1 cut(s)	562
Bse8I	GATNNNNATC	1 cut(s)	287
BseCI	ATCGAT	1 cut(s)	181
BseDI	CCNNGG	1 cut(s)	506
BseGI	GGATG	1 cut(s)	516
BseJI	GATNNNNATC	1 cut(s)	287
BseMI	GCAATG	1 cut(s)	562
BseMII	CTCAG	1 cut(s)	612
BsePI	GCGCGC	1 cut(s)	661
BseXI	GCAGC	2 cut(s)	256, 402
BseYI	CCCAGC	1 cut(s)	303
BsgI	GTGCAG	1 cut(s)	263
Bsh1236I	CGCG	1 cut(s)	663
BshFI	GGCC	1 cut(s)	211
BshVI	ATCGAT	1 cut(s)	181
BsiSI	CCGG	1 cut(s)	598
BsmI	GAATGC	1 cut(s)	478
BsnI	GGCC	1 cut(s)	211
Bsp143I	GATC	6 cut(s)	138, 203, 288, 325, 360, 670
BspACI	CCGC	1 cut(s)	307
BspANI	GGCC	1 cut(s)	211
BspCNI	CTCAG	1 cut(s)	613
BspDI	ATCGAT	1 cut(s)	181
BspFNI	CGCG	1 cut(s)	663
BspLI	GGNNCC	2 cut(s)	458, 602
BspPI	GGATC	3 cut(s)	146, 211, 283
BsrDI	GCAATG	1 cut(s)	562
BssECI	CCNNGG	1 cut(s)	506
BssHII	GCGCGC	1 cut(s)	661
BssMI	GATC	6 cut(s)	138, 203, 288, 325, 360, 670
Bst4CI	ACNGT	1 cut(s)	480
Bst6I	CTCTTC	1 cut(s)	483
BstBAI	YACGTR	1 cut(s)	485
BstC8I	GCNNGC	2 cut(s)	371, 663
BstDEI	CTNAG	1 cut(s)	621
BstDSI	CCRYGG	1 cut(s)	506
BstF5I	GGATG	1 cut(s)	516
BstFNI	CGCG	1 cut(s)	663
BstHHI	GCGC	2 cut(s)	663, 665
BstKTI	GATC	6 cut(s)	141, 206, 291, 328, 363, 673
BstMBI	GATC	6 cut(s)	138, 203, 288, 325, 360, 670
BstMWI	GCNNNNNNNGC	6 cut(s)	107, 253, 272, 390, 609, 658
BstNSI	RCATGY	1 cut(s)	166
BstUI	CGCG	1 cut(s)	663
BstV1I	GCAGC	2 cut(s)	256, 402
BstV2I	GAAGAC	1 cut(s)	112
BstX2I	RGATCY	2 cut(s)	138, 288
BstYI	RGATCY	2 cut(s)	138, 288
Bsu15I	ATCGAT	1 cut(s)	181
BsuRI	GGCC	1 cut(s)	211
BsuTUI	ATCGAT	1 cut(s)	181
BtgI	CCRYGG	1 cut(s)	506
BtgZI	GCGATG	2 cut(s)	111, 661
BtsCI	GGATG	1 cut(s)	516
Cac8I	GCNNGC	2 cut(s)	371, 663
CfoI	GCGC	2 cut(s)	663, 665
Cfr13I	GGNCC	1 cut(s)	209
ClaI	ATCGAT	1 cut(s)	181
CseI	GACGC	1 cut(s)	534
CviAII	CATG	4 cut(s)	163, 194, 257, 613
DdeI	CTNAG	1 cut(s)	621
DpnI	GATC	6 cut(s)	140, 205, 290, 327, 362, 672
DpnII	GATC	6 cut(s)	138, 203, 288, 325, 360, 670
Eam1104I	CTCTTC	1 cut(s)	483
EarI	CTCTTC	1 cut(s)	483
Eco57I	CTGAAG	1 cut(s)	123
FaeI	CATG	4 cut(s)	166, 197, 260, 616
FatI	CATG	4 cut(s)	162, 193, 256, 612
Fnu4HI	GCNGC	2 cut(s)	245, 391
FokI	GGATG	1 cut(s)	523
Fsp4HI	GCNGC	2 cut(s)	245, 391
FspBI	CTAG	1 cut(s)	293
GlaI	GCGC	2 cut(s)	662, 664
GluI	GCNGC	2 cut(s)	245, 391
GsaI	CCCAGC	1 cut(s)	307
GsuI	CTGGAG	2 cut(s)	136, 395
HaeIII	GGCC	1 cut(s)	211
HapII	CCGG	1 cut(s)	598
HgaI	GACGC	1 cut(s)	534
HhaI	GCGC	2 cut(s)	663, 665
Hin1II	CATG	4 cut(s)	166, 197, 260, 616
Hin6I	GCGC	2 cut(s)	661, 663
HinP1I	GCGC	2 cut(s)	661, 663
HindIII	AAGCTT	4 cut(s)	72, 297, 311, 382
HinfI	GANTC	2 cut(s)	260, 332
HpaII	CCGG	1 cut(s)	598
HphI	GGTGA	1 cut(s)	513
Hpy166II	GTNNAC	1 cut(s)	628
Hpy188I	TCNGA	3 cut(s)	160, 588, 622
Hpy188III	TCNNGA	3 cut(s)	43, 329, 527
Hpy8I	GTNNAC	1 cut(s)	628
Hpy99I	CGWCG	1 cut(s)	54
HpyAV	CCTTC	1 cut(s)	49
HpyCH4III	ACNGT	1 cut(s)	480
HpyCH4IV	ACGT	2 cut(s)	49, 484
HpyCH4V	TGCA	4 cut(s)	110, 166, 244, 476
HpyF10VI	GCNNNNNNNGC	6 cut(s)	107, 253, 272, 390, 609, 658
HpyF3I	CTNAG	1 cut(s)	621
HpySE526I	ACGT	2 cut(s)	49, 484
Hsp92II	CATG	4 cut(s)	166, 197, 260, 616
HspAI	GCGC	2 cut(s)	661, 663
Kzo9I	GATC	6 cut(s)	138, 203, 288, 325, 360, 670
LmnI	GCTCC	5 cut(s)	376, 424, 569, 589, 600
Lsp1109I	GCAGC	2 cut(s)	256, 402
LweI	GCATC	1 cut(s)	88
MaeI	CTAG	1 cut(s)	293
MaeII	ACGT	2 cut(s)	49, 484
MaeIII	GTNAC	3 cut(s)	34, 462, 480
MalI	GATC	6 cut(s)	140, 205, 290, 327, 362, 672
MboI	GATC	6 cut(s)	138, 203, 288, 325, 360, 670
MboII	GAAGA	4 cut(s)	112, 292, 359, 500
MflI	RGATCY	2 cut(s)	138, 288
MluCI	AATT	2 cut(s)	9, 413
MnlI	CCTC	3 cut(s)	447, 534, 616
MseI	TTAA	1 cut(s)	65
MslI	CAYNNNNRTG	2 cut(s)	192, 198
MspA1I	CMGCKG	2 cut(s)	307, 373
MspI	CCGG	1 cut(s)	598
Mva1269I	GAATGC	1 cut(s)	478
MvnI	CGCG	1 cut(s)	663
MwoI	GCNNNNNNNGC	6 cut(s)	107, 253, 272, 390, 609, 658
NdeII	GATC	6 cut(s)	138, 203, 288, 325, 360, 670
NlaIII	CATG	4 cut(s)	166, 197, 260, 616
NlaIV	GGNNCC	2 cut(s)	458, 602
NmuCI	GTSAC	1 cut(s)	34
NspI	RCATGY	1 cut(s)	166
PauI	GCGCGC	1 cut(s)	661
PctI	GAATGC	1 cut(s)	478
PfeI	GAWTC	2 cut(s)	260, 332
PkrI	GCNGC	2 cut(s)	246, 392
Ppu21I	YACGTR	1 cut(s)	485
PspFI	CCCAGC	1 cut(s)	303
PspN4I	GGNNCC	2 cut(s)	458, 602
PspPI	GGNCC	1 cut(s)	209
PsrI	GAACNNNNNNTAC	2 cut(s)	601, 633
PsuI	RGATCY	2 cut(s)	138, 288
PteI	GCGCGC	1 cut(s)	661
PvuII	CAGCTG	1 cut(s)	373
RseI	CAYNNNNRTG	2 cut(s)	192, 198
SaqAI	TTAA	1 cut(s)	65
SatI	GCNGC	2 cut(s)	245, 391
Sau3AI	GATC	6 cut(s)	138, 203, 288, 325, 360, 670
Sau96I	GGNCC	1 cut(s)	209
SfaNI	GCATC	1 cut(s)	88
SmiMI	CAYNNNNRTG	2 cut(s)	192, 198
SmlI	CTYRAG	1 cut(s)	525
SmoI	CTYRAG	1 cut(s)	525
Sse9I	AATT	2 cut(s)	9, 413
SsiI	CCGC	1 cut(s)	307
SspMI	CTAG	1 cut(s)	293
TaaI	ACNGT	1 cut(s)	480
TaiI	ACGT	2 cut(s)	52, 487
TaqI	TCGA	3 cut(s)	44, 52, 181
TasI	AATT	2 cut(s)	9, 413
TfiI	GAWTC	2 cut(s)	260, 332
Tru1I	TTAA	1 cut(s)	65
Tru9I	TTAA	1 cut(s)	65
TseFI	GTSAC	1 cut(s)	34
TseI	GCWGC	2 cut(s)	244, 390
Tsp45I	GTSAC	1 cut(s)	34
TspDTI	ATGAA	4 cut(s)	17, 210, 273, 573
TspGWI	ACGGA	2 cut(s)	184, 437
XceI	RCATGY	1 cut(s)	166
XspI	CTAG	1 cut(s)	293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.