Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0000758

Physical Location & Seq

Genomic Coordinates Reverse (-)

18818383 .. 18826187

Gene Structure 7805 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g20400.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGAAAAGAATTGAGAATAACTCAAGCCGGCAAGTGACCTTCTCGAAACGTCGAAAGGGGTTGTTAAAGAAAGCTTATGAGCTTTCGGTTCTTTGCGATGCTGAAGTTGCAGTCATCATCTTCTCGCAAAAAGACAGGATCTATGAGTTCGCCAGCTCTGACATGCAACGGACTATAAATCGATATCATAAACATGAAAATGGATCAGGGCAAACCAACAAGGTTGAAGTGGAACAATATGTGCAGCACTTGAGGCATGAATCAGCTATTATGGCCAAGAAGATAGAGATCCTAGAAGCTTCCCAGCGGAAGCTTTTGGGAAATGATCTGGATTCTTGCCCTGTTGAAGAACTCCAAGAGATCAGTAGCCAGCTGGAGCGAAGCTTACGCAGCATAAGAGAAAGAAAGGGTCAATTATACATGGAGCAGATGGAACAACACAAGGCAAGGGAGAGGTTCCTGTTACAAGAGAATGCACGGTTACGCGAAGAGTGTCGTGCGAAGCCGCGGATGGAGTTTTCACCCCAAGAAAAAAGAGCTTCTGCGTCTGTAAGCTATGAAAAGGCAGGAGCTTCTGCTTCTGCTCCTATAAACTACTGGAGCCAAAGAAGCATGAGTTCTGAGGTGGAGACCGATTTGCTCATTGGACAGCCAATAGTGCGCGCTGTTGATCGCATCGCAGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0007568 GO:0008150 GO:0009791 GO:0009838 GO:0009889 GO:0009908 GO:0009909 GO:0010150 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048437 GO:0048580 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080187 GO:0090567 GO:0090693 GO:0099402 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

229

Amino Acids

26.39

Weight (kDa)

9.2

Isoelectric Point (pI)

63.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000758)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165
fragaria_vesca	FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740
malus_domestica	MD00G1004400.v1.1 MD00G1004600.v1.1 MD01G1193300.v1.1 MD01G1193500.v1.1 MD01G1193600.v1.1
prunus_persica	Prupe.2G287500_v2.0.a1
pyrus_communis	pycom01g20400 pycom01g20410 pycom07g23970
rosa_chinensis	RchiOBHm_Chr1g0376251 RchiOBHm_Chr1g0376271 RchiOBHm_Chr1g0376291
rosa_laevigata	RLG00000026614 RLG00000026615 RLG00000026616
rosa_multiflora	Rmu_co8488767.1_g000001 Rmu_ssc0000116.1_g000059 Rmu_ssc0000116.1_g000060
rosa_roxburghii	Rroxscaffold_4G00282230 Rroxscaffold_4G00282240 Rroxscaffold_4G00282270
rosa_rugosa	Rorug01G0394900 Rorug01G0395000
rosa_samantha	Rh1AG406300 Rh1AG406400 Rh1BG370100 Rh1BG370400 Rh1CG383000 Rh1CG383100 Rh1CG383200 Rh1DG399900 Rh1DG400200
rosa_wichuraiana	Rw1G036050 Rw1G036060 Rw1G036070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	486, 508, 663
AciI	CCGC	3 cut(s)	307, 506, 508
AclWI	GGATC	3 cut(s)	146, 211, 283
AcoI	YGGCCR	1 cut(s)	273
AcuI	CTGAAG	1 cut(s)	123
AgsI	TTSAA	2 cut(s)	227, 347
Alw26I	GTCTC	1 cut(s)	623
AlwI	GGATC	3 cut(s)	146, 211, 283
AoxI	GGCC	1 cut(s)	273
ApeKI	GCWGC	3 cut(s)	244, 390, 680
AspLEI	GCGC	2 cut(s)	663, 665
AsuHPI	GGTGA	1 cut(s)	513
BalI	TGGCCA	1 cut(s)	275
BbvI	GCAGC	2 cut(s)	256, 402
BccI	CCATC	2 cut(s)	424, 505
BcoDI	GTCTC	1 cut(s)	623
BfaI	CTAG	1 cut(s)	293
BisI	GCNGC	4 cut(s)	245, 391, 506, 681
BlsI	GCNGC	4 cut(s)	246, 392, 507, 682
BmiI	GGNNCC	2 cut(s)	458, 602
BmsI	GCATC	1 cut(s)	88
BplI	GAGNNNNNCTC	1 cut(s)	37
BpmI	CTGGAG	2 cut(s)	395, 619
BpuEI	CTTGAG	2 cut(s)	7, 271
Bsa29I	ATCGAT	1 cut(s)	181
BsaBI	GATNNNNATC	1 cut(s)	287
BsaI	GGTCTC	1 cut(s)	623
BsaJI	CCNNGG	1 cut(s)	506
Bse118I	RCCGGY	1 cut(s)	27
Bse1I	ACTGG	1 cut(s)	602
Bse8I	GATNNNNATC	1 cut(s)	287
BseCI	ATCGAT	1 cut(s)	181
BseDI	CCNNGG	1 cut(s)	506
BseGI	GGATG	1 cut(s)	516
BseJI	GATNNNNATC	1 cut(s)	287
BseMII	CTCAG	1 cut(s)	612
BseNI	ACTGG	1 cut(s)	602
BsePI	GCGCGC	1 cut(s)	661
BseXI	GCAGC	2 cut(s)	256, 402
BseYI	CCCAGC	1 cut(s)	303
BsgI	GTGCAG	1 cut(s)	263
Bsh1236I	CGCG	3 cut(s)	486, 508, 663
BshFI	GGCC	1 cut(s)	275
BshVI	ATCGAT	1 cut(s)	181
BsiSI	CCGG	1 cut(s)	28
BsmAI	GTCTC	1 cut(s)	623
BsmI	GAATGC	1 cut(s)	478
BsnI	GGCC	1 cut(s)	275
Bso31I	GGTCTC	1 cut(s)	623
Bsp143I	GATC	6 cut(s)	138, 203, 288, 325, 360, 670
BspACI	CCGC	3 cut(s)	307, 506, 508
BspANI	GGCC	1 cut(s)	275
BspCNI	CTCAG	1 cut(s)	613
BspDI	ATCGAT	1 cut(s)	181
BspFNI	CGCG	3 cut(s)	486, 508, 663
BspLI	GGNNCC	2 cut(s)	458, 602
BspPI	GGATC	3 cut(s)	146, 211, 283
BspTNI	GGTCTC	1 cut(s)	623
BsrFI	RCCGGY	1 cut(s)	27
BsrI	ACTGG	1 cut(s)	602
BssAI	RCCGGY	1 cut(s)	27
BssECI	CCNNGG	1 cut(s)	506
BssHII	GCGCGC	1 cut(s)	661
BssMI	GATC	6 cut(s)	138, 203, 288, 325, 360, 670
Bst4CI	ACNGT	1 cut(s)	480
Bst6I	CTCTTC	1 cut(s)	483
BstC8I	GCNNGC	4 cut(s)	29, 154, 371, 663
BstDEI	CTNAG	1 cut(s)	621
BstDSI	CCRYGG	1 cut(s)	506
BstF5I	GGATG	1 cut(s)	516
BstFNI	CGCG	3 cut(s)	486, 508, 663
BstHHI	GCGC	2 cut(s)	663, 665
BstKTI	GATC	6 cut(s)	141, 206, 291, 328, 363, 673
BstMAI	GTCTC	1 cut(s)	623
BstMBI	GATC	6 cut(s)	138, 203, 288, 325, 360, 670
BstMWI	GCNNNNNNNGC	6 cut(s)	107, 253, 272, 390, 609, 658
BstNSI	RCATGY	1 cut(s)	166
BstUI	CGCG	3 cut(s)	486, 508, 663
BstV1I	GCAGC	2 cut(s)	256, 402
BstX2I	RGATCY	2 cut(s)	138, 288
BstYI	RGATCY	2 cut(s)	138, 288
Bsu15I	ATCGAT	1 cut(s)	181
BsuRI	GGCC	1 cut(s)	275
BsuTUI	ATCGAT	1 cut(s)	181
BtgI	CCRYGG	1 cut(s)	506
BtgZI	GCGATG	2 cut(s)	111, 661
BtsCI	GGATG	1 cut(s)	516
Cac8I	GCNNGC	4 cut(s)	29, 154, 371, 663
CfoI	GCGC	2 cut(s)	663, 665
Cfr10I	RCCGGY	1 cut(s)	27
Cfr42I	CCGCGG	1 cut(s)	509
ClaI	ATCGAT	1 cut(s)	181
CseI	GACGC	1 cut(s)	534
CviAII	CATG	5 cut(s)	163, 194, 257, 421, 613
DdeI	CTNAG	1 cut(s)	621
DpnI	GATC	6 cut(s)	140, 205, 290, 327, 362, 672
DpnII	GATC	6 cut(s)	138, 203, 288, 325, 360, 670
EaeI	YGGCCR	1 cut(s)	273
Eam1104I	CTCTTC	1 cut(s)	483
EarI	CTCTTC	1 cut(s)	483
Eco31I	GGTCTC	1 cut(s)	623
Eco32I	GATATC	1 cut(s)	185
Eco57I	CTGAAG	1 cut(s)	123
EcoRV	GATATC	1 cut(s)	185
FaeI	CATG	5 cut(s)	166, 197, 260, 424, 616
FatI	CATG	5 cut(s)	162, 193, 256, 420, 612
Fnu4HI	GCNGC	4 cut(s)	245, 391, 506, 681
FokI	GGATG	1 cut(s)	523
Fsp4HI	GCNGC	4 cut(s)	245, 391, 506, 681
FspBI	CTAG	1 cut(s)	293
GlaI	GCGC	2 cut(s)	662, 664
GluI	GCNGC	4 cut(s)	245, 391, 506, 681
GsaI	CCCAGC	1 cut(s)	307
GsuI	CTGGAG	2 cut(s)	395, 619
HaeIII	GGCC	1 cut(s)	275
HapII	CCGG	1 cut(s)	28
HgaI	GACGC	1 cut(s)	534
HhaI	GCGC	2 cut(s)	663, 665
Hin1II	CATG	5 cut(s)	166, 197, 260, 424, 616
Hin6I	GCGC	2 cut(s)	661, 663
HinP1I	GCGC	2 cut(s)	661, 663
HindIII	AAGCTT	4 cut(s)	72, 297, 311, 382
HinfI	GANTC	2 cut(s)	260, 332
HpaII	CCGG	1 cut(s)	28
HphI	GGTGA	1 cut(s)	513
Hpy188I	TCNGA	2 cut(s)	160, 622
Hpy188III	TCNNGA	2 cut(s)	43, 329
Hpy99I	CGWCG	1 cut(s)	54
HpyAV	CCTTC	1 cut(s)	49
HpyCH4III	ACNGT	1 cut(s)	480
HpyCH4IV	ACGT	1 cut(s)	49
HpyCH4V	TGCA	4 cut(s)	110, 166, 244, 476
HpyF10VI	GCNNNNNNNGC	6 cut(s)	107, 253, 272, 390, 609, 658
HpyF3I	CTNAG	1 cut(s)	621
HpySE526I	ACGT	1 cut(s)	49
Hsp92II	CATG	5 cut(s)	166, 197, 260, 424, 616
HspAI	GCGC	2 cut(s)	661, 663
KroI	GCCGGC	1 cut(s)	27
KroNI	GCCGGC	1 cut(s)	29
KspI	CCGCGG	1 cut(s)	509
Kzo9I	GATC	6 cut(s)	138, 203, 288, 325, 360, 670
LmnI	GCTCC	5 cut(s)	376, 424, 569, 589, 600
Lsp1109I	GCAGC	2 cut(s)	256, 402
LweI	GCATC	1 cut(s)	88
MaeI	CTAG	1 cut(s)	293
MaeII	ACGT	1 cut(s)	49
MaeIII	GTNAC	3 cut(s)	34, 462, 480
MalI	GATC	6 cut(s)	140, 205, 290, 327, 362, 672
MboI	GATC	6 cut(s)	138, 203, 288, 325, 360, 670
MboII	GAAGA	4 cut(s)	112, 292, 359, 500
MflI	RGATCY	2 cut(s)	138, 288
MlsI	TGGCCA	1 cut(s)	275
MluCI	AATT	2 cut(s)	9, 413
MluNI	TGGCCA	1 cut(s)	275
MnlI	CCTC	3 cut(s)	246, 447, 616
Mox20I	TGGCCA	1 cut(s)	275
MroNI	GCCGGC	1 cut(s)	27
MscI	TGGCCA	1 cut(s)	275
MseI	TTAA	1 cut(s)	65
MslI	CAYNNNNRTG	2 cut(s)	192, 198
Msp20I	TGGCCA	1 cut(s)	275
MspA1I	CMGCKG	3 cut(s)	307, 373, 508
MspI	CCGG	1 cut(s)	28
Mva1269I	GAATGC	1 cut(s)	478
MvnI	CGCG	3 cut(s)	486, 508, 663
MwoI	GCNNNNNNNGC	6 cut(s)	107, 253, 272, 390, 609, 658
NaeI	GCCGGC	1 cut(s)	29
NdeII	GATC	6 cut(s)	138, 203, 288, 325, 360, 670
NgoMIV	GCCGGC	1 cut(s)	27
NlaIII	CATG	5 cut(s)	166, 197, 260, 424, 616
NlaIV	GGNNCC	2 cut(s)	458, 602
NmuCI	GTSAC	1 cut(s)	34
NspI	RCATGY	1 cut(s)	166
PauI	GCGCGC	1 cut(s)	661
PctI	GAATGC	1 cut(s)	478
PdiI	GCCGGC	1 cut(s)	29
PfeI	GAWTC	2 cut(s)	260, 332
PkrI	GCNGC	4 cut(s)	246, 392, 507, 682
PspFI	CCCAGC	1 cut(s)	303
PspN4I	GGNNCC	2 cut(s)	458, 602
PsuI	RGATCY	2 cut(s)	138, 288
PteI	GCGCGC	1 cut(s)	661
PvuII	CAGCTG	1 cut(s)	373
RseI	CAYNNNNRTG	2 cut(s)	192, 198
SacII	CCGCGG	1 cut(s)	509
SaqAI	TTAA	1 cut(s)	65
SatI	GCNGC	4 cut(s)	245, 391, 506, 681
Sau3AI	GATC	6 cut(s)	138, 203, 288, 325, 360, 670
SfaNI	GCATC	1 cut(s)	88
Sfr303I	CCGCGG	1 cut(s)	509
SgrBI	CCGCGG	1 cut(s)	509
SmiMI	CAYNNNNRTG	2 cut(s)	192, 198
SmlI	CTYRAG	2 cut(s)	22, 250
SmoI	CTYRAG	2 cut(s)	22, 250
Sse9I	AATT	2 cut(s)	9, 413
SsiI	CCGC	3 cut(s)	307, 506, 508
SspMI	CTAG	1 cut(s)	293
TaaI	ACNGT	1 cut(s)	480
TaiI	ACGT	1 cut(s)	52
TaqI	TCGA	3 cut(s)	44, 52, 181
TaqII	GACCGA	1 cut(s)	647
TasI	AATT	2 cut(s)	9, 413
TauI	GCSGC	1 cut(s)	508
TfiI	GAWTC	2 cut(s)	260, 332
Tru1I	TTAA	1 cut(s)	65
Tru9I	TTAA	1 cut(s)	65
TseFI	GTSAC	1 cut(s)	34
TseI	GCWGC	3 cut(s)	244, 390, 680
Tsp45I	GTSAC	1 cut(s)	34
TspDTI	ATGAA	4 cut(s)	17, 210, 273, 573
TspGWI	ACGGA	1 cut(s)	184
XceI	RCATGY	1 cut(s)	166
XspI	CTAG	1 cut(s)	293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.