Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0000758

Physical Location & Seq

Genomic Coordinates Reverse (-)

65313153 .. 65328868

Gene Structure 15716 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG383100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGAGGACTGGTGCTGACAATAGACAACTAGGTGGCACGCTCCTATTGGCCCCTCACGCACGCACTTGCGAAGCAGAGAAAGACATGGAGAATAATGGAAGGAAGGTATTGATGAATATGGAAATAAAGGAGATGGTGAGAGGGAAGATTCAGATGAAAAGAATCGAAAATGCGACAAGGAGGCAGGTAACCTTTTCGAAACGTCGAAACGGGCTGTTGAAGAAGGCTTATGAGCTTTCGGTTCTTTGCGATGCAGAAGTTGCGGTCATCGTCTTTTCTCAGAAAAACAGGCTCTACGAGTTTTCCAGCTCTAACATGCAAAAGACTATAAAACAATACCATAAACATGCAAAAGGTGCGCTAACCAACACTACTGAAGTGGAACAGTATAAGCAGCAATTGAAGCATGAATCAGCTGACATGACCAAGAAGATCGAGATCCTAGAAGCTTCTCAACGGAGGCTTTTGGGACATGACTTGGATTCTTTCTCTGCTCAAGAACTCAATCAGATCAGTAGCCAGCTCGACCGAAGCTTGCGCATTGTACGAGAGAGAAAGGCTCAGCTATTCATGGAGCAGATAGAACGACTAAAAGCAAAGGAGAGGCTTCTCTTAGGAGAGAATGCAAAACTACACACAAAGTGTGGTGCAAGGCCTTGTCAGAAACCTTTAGTTCAAGAAAAAGGAGTTGGGGCGGCAAGTTGTAACTGGATGAATAGTAGTCAAAGTAGCCGCAGCCAAACAATTAGTAATTCAGATCAGATGAAGTTGAAGAAGAATGAAAGCTCAGGGTATCTTCGAAAATTCGGAGGAGTGGATTCTAGTGGTGTTGGTGTTAAAGATTTGGGAGGGGGTTCGGGTTTGTTGAGGAGTGTTAGAGAGGTTGATCCAGTTGAAGAGATGGTATCGTCGATTCAGTTGCTTGGGGAGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0007568 GO:0008150 GO:0009791 GO:0009838 GO:0009889 GO:0009908 GO:0009909 GO:0010150 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048437 GO:0048580 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080187 GO:0090567 GO:0090693 GO:0099402 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

311

Amino Acids

35.04

Weight (kDa)

9.7

Isoelectric Point (pI)

42.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	54 - 101	1.1e-26	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	129 - 215	1.2e-22	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000758)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165
fragaria_vesca	FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740
malus_domestica	MD00G1004400.v1.1 MD00G1004600.v1.1 MD01G1193300.v1.1 MD01G1193500.v1.1 MD01G1193600.v1.1
prunus_persica	Prupe.2G287500_v2.0.a1
pyrus_communis	pycom01g20400 pycom01g20410 pycom07g23970
rosa_chinensis	RchiOBHm_Chr1g0376251 RchiOBHm_Chr1g0376271 RchiOBHm_Chr1g0376291
rosa_laevigata	RLG00000026614 RLG00000026615 RLG00000026616
rosa_multiflora	Rmu_co8488767.1_g000001 Rmu_ssc0000116.1_g000059 Rmu_ssc0000116.1_g000060
rosa_roxburghii	Rroxscaffold_4G00282230 Rroxscaffold_4G00282240 Rroxscaffold_4G00282270
rosa_rugosa	Rorug01G0394900 Rorug01G0395000
rosa_samantha	Rh1AG406300 Rh1AG406400 Rh1BG370100 Rh1BG370400 Rh1CG383000 Rh1CG383100 Rh1CG383200 Rh1DG399900 Rh1DG400200
rosa_wichuraiana	Rw1G036050 Rw1G036060 Rw1G036070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	539
Acc36I	ACCTGC	1 cut(s)	175
AciI	CCGC	3 cut(s)	263, 695, 733
AclWI	GGATC	2 cut(s)	433, 881
AcsI	RAATTY	1 cut(s)	803
AcuI	CTGAAG	1 cut(s)	396
AdeI	CACNNNGTG	1 cut(s)	642
AfaI	GTAC	1 cut(s)	546
AgsI	TTSAA	5 cut(s)	220, 403, 677, 772, 896
AjuI	GAANNNNNNNTTGG	2 cut(s)	672, 704
AluBI	AGCT	8 cut(s)	235, 309, 416, 449, 523, 534, 565, 786
AluI	AGCT	8 cut(s)	235, 309, 416, 449, 523, 534, 565, 786
AlwI	GGATC	2 cut(s)	433, 881
AoxI	GGCC	2 cut(s)	48, 653
ApeKI	GCWGC	2 cut(s)	394, 735
ApoI	RAATTY	1 cut(s)	803
AspLEI	GCGC	2 cut(s)	361, 540
AspS9I	GGNCC	1 cut(s)	49
AsuHPI	GGTGA	1 cut(s)	148
AsuII	TTCGAA	2 cut(s)	197, 799
BbvI	GCAGC	2 cut(s)	406, 747
BccI	CCATC	2 cut(s)	127, 895
BcgI	CGANNNNNNTGC	2 cut(s)	901, 935
BfaI	CTAG	3 cut(s)	29, 443, 822
BfuAI	ACCTGC	1 cut(s)	175
BisI	GCNGC	4 cut(s)	395, 696, 733, 736
BlpI	GCTNAGC	1 cut(s)	561
BlsI	GCNGC	4 cut(s)	396, 697, 734, 737
BmgT120I	GGNCC	1 cut(s)	49
BmiI	GGNNCC	1 cut(s)	51
BmsI	GCATC	1 cut(s)	241
BplI	GAGNNNNNCTC	2 cut(s)	544, 576
Bpu10I	CCTNAGC	1 cut(s)	787
Bpu1102I	GCTNAGC	1 cut(s)	561
Bpu14I	TTCGAA	2 cut(s)	197, 799
BpuEI	CTTGAG	1 cut(s)	480
BsaBI	GATNNNNATC	1 cut(s)	437
Bse1I	ACTGG	3 cut(s)	13, 713, 890
Bse8I	GATNNNNATC	1 cut(s)	437
BseGI	GGATG	1 cut(s)	717
BseJI	GATNNNNATC	1 cut(s)	437
BseMII	CTCAG	3 cut(s)	293, 575, 801
BseNI	ACTGG	3 cut(s)	13, 713, 890
BseRI	GAGGAG	2 cut(s)	825, 883
BseXI	GCAGC	2 cut(s)	406, 747
Bsh1285I	CGRYCG	1 cut(s)	529
BshFI	GGCC	2 cut(s)	50, 655
BsiEI	CGRYCG	1 cut(s)	529
BslFI	GGGAC	1 cut(s)	483
BsmFI	GGGAC	1 cut(s)	483
BsmI	GAATGC	1 cut(s)	628
BsnI	GGCC	2 cut(s)	50, 655
Bsp119I	TTCGAA	2 cut(s)	197, 799
Bsp143I	GATC	5 cut(s)	432, 438, 510, 757, 886
Bsp1720I	GCTNAGC	1 cut(s)	561
BspACI	CCGC	3 cut(s)	263, 695, 733
BspANI	GGCC	2 cut(s)	50, 655
BspCNI	CTCAG	3 cut(s)	292, 574, 800
BspLI	GGNNCC	1 cut(s)	51
BspMI	ACCTGC	1 cut(s)	175
BspPI	GGATC	2 cut(s)	433, 881
BspT104I	TTCGAA	2 cut(s)	197, 799
BsrI	ACTGG	3 cut(s)	13, 713, 890
BssMI	GATC	5 cut(s)	432, 438, 510, 757, 886
Bst4CI	ACNGT	1 cut(s)	387
Bst6I	CTCTTC	1 cut(s)	891
BstAPI	GCANNNNNTGC	2 cut(s)	260, 356
BstBI	TTCGAA	2 cut(s)	197, 799
BstC8I	GCNNGC	4 cut(s)	38, 61, 521, 536
BstDEI	CTNAG	4 cut(s)	279, 561, 613, 787
BstEII	GGTNACC	1 cut(s)	187
BstF5I	GGATG	1 cut(s)	717
BstHHI	GCGC	2 cut(s)	361, 540
BstKTI	GATC	5 cut(s)	435, 441, 513, 760, 889
BstMBI	GATC	5 cut(s)	432, 438, 510, 757, 886
BstMCI	CGRYCG	1 cut(s)	529
BstMWI	GCNNNNNNNGC	4 cut(s)	56, 260, 356, 403
BstNSI	RCATGY	2 cut(s)	319, 350
BstPI	GGTNACC	1 cut(s)	187
BstV1I	GCAGC	2 cut(s)	406, 747
BstX2I	RGATCY	1 cut(s)	438
BstYI	RGATCY	1 cut(s)	438
BsuRI	GGCC	2 cut(s)	50, 655
BtgZI	GCGATG	1 cut(s)	264
BtsCI	GGATG	1 cut(s)	717
BveI	ACCTGC	1 cut(s)	175
Cac8I	GCNNGC	4 cut(s)	38, 61, 521, 536
CfoI	GCGC	2 cut(s)	361, 540
Cfr13I	GGNCC	1 cut(s)	49
Csp6I	GTAC	1 cut(s)	545
CviAII	CATG	7 cut(s)	85, 316, 347, 407, 421, 473, 571
CviQI	GTAC	1 cut(s)	545
DdeI	CTNAG	4 cut(s)	279, 561, 613, 787
DpnI	GATC	5 cut(s)	434, 440, 512, 759, 888
DpnII	GATC	5 cut(s)	432, 438, 510, 757, 886
DraIII	CACNNNGTG	1 cut(s)	642
Eam1104I	CTCTTC	1 cut(s)	891
EarI	CTCTTC	1 cut(s)	891
Eco147I	AGGCCT	1 cut(s)	655
Eco57I	CTGAAG	1 cut(s)	396
Eco91I	GGTNACC	1 cut(s)	187
EcoO65I	GGTNACC	1 cut(s)	187
FaeI	CATG	7 cut(s)	88, 319, 350, 410, 424, 476, 574
FaqI	GGGAC	1 cut(s)	483
FatI	CATG	7 cut(s)	84, 315, 346, 406, 420, 472, 570
Fnu4HI	GCNGC	4 cut(s)	395, 696, 733, 736
FokI	GGATG	1 cut(s)	724
Fsp4HI	GCNGC	4 cut(s)	395, 696, 733, 736
FspBI	CTAG	3 cut(s)	29, 443, 822
FspI	TGCGCA	1 cut(s)	539
GlaI	GCGC	2 cut(s)	360, 539
GluI	GCNGC	4 cut(s)	395, 696, 733, 736
HaeIII	GGCC	2 cut(s)	50, 655
HhaI	GCGC	2 cut(s)	361, 540
Hin1II	CATG	7 cut(s)	88, 319, 350, 410, 424, 476, 574
Hin6I	GCGC	2 cut(s)	359, 538
HinP1I	GCGC	2 cut(s)	359, 538
HindIII	AAGCTT	2 cut(s)	447, 532
HinfI	GANTC	6 cut(s)	148, 162, 410, 482, 818, 913
HphI	GGTGA	1 cut(s)	148
Hpy188I	TCNGA	7 cut(s)	153, 282, 510, 663, 757, 762, 809
Hpy188III	TCNNGA	3 cut(s)	436, 497, 677
Hpy99I	CGWCG	2 cut(s)	207, 913
HpyAV	CCTTC	3 cut(s)	93, 97, 217
HpyCH4III	ACNGT	1 cut(s)	387
HpyCH4IV	ACGT	1 cut(s)	202
HpyCH4V	TGCA	5 cut(s)	254, 319, 350, 626, 650
HpyF10VI	GCNNNNNNNGC	4 cut(s)	56, 260, 356, 403
HpyF3I	CTNAG	4 cut(s)	279, 561, 613, 787
HpySE526I	ACGT	1 cut(s)	202
Hsp92II	CATG	7 cut(s)	88, 319, 350, 410, 424, 476, 574
HspAI	GCGC	2 cut(s)	359, 538
Kzo9I	GATC	5 cut(s)	432, 438, 510, 757, 886
LmnI	GCTCC	2 cut(s)	45, 574
LpnPI	CCDG	7 cut(s)	170, 274, 319, 533, 694, 774, 903
Lsp1109I	GCAGC	2 cut(s)	406, 747
LweI	GCATC	1 cut(s)	241
MaeI	CTAG	3 cut(s)	29, 443, 822
MaeII	ACGT	1 cut(s)	202
MaeIII	GTNAC	2 cut(s)	187, 704
MalI	GATC	5 cut(s)	434, 440, 512, 759, 888
MboI	GATC	5 cut(s)	432, 438, 510, 757, 886
MboII	GAAGA	7 cut(s)	157, 232, 442, 784, 787, 788, 908
MfeI	CAATTG	1 cut(s)	398
MflI	RGATCY	1 cut(s)	438
MluCI	AATT	4 cut(s)	398, 744, 751, 803
MnlI	CCTC	9 cut(s)	63, 134, 174, 453, 597, 803, 842, 861, 874
MseI	TTAA	1 cut(s)	837
MslI	CAYNNNNRTG	1 cut(s)	345
MspA1I	CMGCKG	1 cut(s)	416
MunI	CAATTG	1 cut(s)	398
Mva1269I	GAATGC	1 cut(s)	628
MwoI	GCNNNNNNNGC	4 cut(s)	56, 260, 356, 403
NdeII	GATC	5 cut(s)	432, 438, 510, 757, 886
NlaIII	CATG	7 cut(s)	88, 319, 350, 410, 424, 476, 574
NlaIV	GGNNCC	1 cut(s)	51
NsbI	TGCGCA	1 cut(s)	539
NspI	RCATGY	2 cut(s)	319, 350
NspV	TTCGAA	2 cut(s)	197, 799
PceI	AGGCCT	1 cut(s)	655
PctI	GAATGC	1 cut(s)	628
PfeI	GAWTC	6 cut(s)	148, 162, 410, 482, 818, 913
PkrI	GCNGC	4 cut(s)	396, 697, 734, 737
PspEI	GGTNACC	1 cut(s)	187
PspN4I	GGNNCC	1 cut(s)	51
PspPI	GGNCC	1 cut(s)	49
PsuI	RGATCY	1 cut(s)	438
PvuII	CAGCTG	1 cut(s)	416
RsaI	GTAC	1 cut(s)	546
RsaNI	GTAC	1 cut(s)	545
RseI	CAYNNNNRTG	1 cut(s)	345
SaqAI	TTAA	1 cut(s)	837
SatI	GCNGC	4 cut(s)	395, 696, 733, 736
Sau3AI	GATC	5 cut(s)	432, 438, 510, 757, 886
Sau96I	GGNCC	1 cut(s)	49
SfaNI	GCATC	1 cut(s)	241
SfuI	TTCGAA	2 cut(s)	197, 799
SmiMI	CAYNNNNRTG	1 cut(s)	345
SmlI	CTYRAG	1 cut(s)	495
SmoI	CTYRAG	1 cut(s)	495
Sse9I	AATT	4 cut(s)	398, 744, 751, 803
SseBI	AGGCCT	1 cut(s)	655
SsiI	CCGC	3 cut(s)	263, 695, 733
SspMI	CTAG	3 cut(s)	29, 443, 822
StuI	AGGCCT	1 cut(s)	655
TaaI	ACNGT	1 cut(s)	387
TaiI	ACGT	1 cut(s)	205
TaqI	TCGA	7 cut(s)	165, 197, 205, 435, 525, 799, 911
TaqII	GACCGA	1 cut(s)	543
TasI	AATT	4 cut(s)	398, 744, 751, 803
TauI	GCSGC	2 cut(s)	698, 735
TfiI	GAWTC	6 cut(s)	148, 162, 410, 482, 818, 913
Tru1I	TTAA	1 cut(s)	837
Tru9I	TTAA	1 cut(s)	837
TseI	GCWGC	2 cut(s)	394, 735
TspDTI	ATGAA	7 cut(s)	128, 170, 423, 559, 728, 779, 795
TspGWI	ACGGA	1 cut(s)	472
XapI	RAATTY	1 cut(s)	803
XceI	RCATGY	2 cut(s)	319, 350
XspI	CTAG	3 cut(s)	29, 443, 822

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.