Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0000758

Physical Location & Seq

Genomic Coordinates Reverse (-)

63930321 .. 63934107

Gene Structure 3787 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G036050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGTGAGAGGGAAGATTGAGGTGAAAAGAATCGAAAATGCGACAAGCAGGCAGGTAGCCTTTTCGAAACGTCGAAACGGGCTGTTGAAGAAGGCTTTTGAGCTTTCGGTTCTTTGCGATGCCGAAGTTGCAGTCATCGTCTTTTCTCAGAAAAACAGGCTCTATGAGTTTTCTAGCTCCGACATGCAAAAGACTATAAAAAAATACCAAAAACATGCAAAAGGTGCGCTAACCAACACTACTGAAGTGGAACAGTATATGCAGCAATTGAAGCATGAATCAGCTGACATGGCCAAGAAGATGGAGACCCTAGAAGCTTCTCAACGGAGGCTTTTGGGACATGACTTGGATCCTTGCTCTGCTCAAGAACTCAATCAGATCAGTAGCCAGCTCGACCGAAGCTTGCGCAAAGTACGAGAGAGAAAGGATCAGCTATTAACGGAGCAGATAGAACGACTAAAAGCAAAGGAGAGGTTCCTCTTAGAAGAGAATGCAAAACTACACACACAGTGTGGTGCAAGGCCTTGTCAGAAACCTTTAGTTCAAGAAAAAGGAGTTGGGGCAGCAAGTTATAACTGGATGAATAGTAGTCAAAGTAGCAGCAGCCAAACAATTAATAATTCAGATCAGGTAGAGACTAGATTGTTCATCGGACCGCCAGTGATGCGCTTGCATAAGCGCTGTATAGTTATGGTGCAAGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0007568 GO:0008150 GO:0009791 GO:0009838 GO:0009889 GO:0009908 GO:0009909 GO:0010150 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048437 GO:0048580 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080187 GO:0090567 GO:0090693 GO:0099402 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

234

Amino Acids

26.83

Weight (kDa)

9.64

Isoelectric Point (pI)

44.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	3.2e-25	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	86 - 171	1e-23	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000758)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165
fragaria_vesca	FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740
malus_domestica	MD00G1004400.v1.1 MD00G1004600.v1.1 MD01G1193300.v1.1 MD01G1193500.v1.1 MD01G1193600.v1.1
prunus_persica	Prupe.2G287500_v2.0.a1
pyrus_communis	pycom01g20400 pycom01g20410 pycom07g23970
rosa_chinensis	RchiOBHm_Chr1g0376251 RchiOBHm_Chr1g0376271 RchiOBHm_Chr1g0376291
rosa_laevigata	RLG00000026614 RLG00000026615 RLG00000026616
rosa_multiflora	Rmu_co8488767.1_g000001 Rmu_ssc0000116.1_g000059 Rmu_ssc0000116.1_g000060
rosa_roxburghii	Rroxscaffold_4G00282230 Rroxscaffold_4G00282240 Rroxscaffold_4G00282270
rosa_rugosa	Rorug01G0394900 Rorug01G0395000
rosa_samantha	Rh1AG406300 Rh1AG406400 Rh1BG370100 Rh1BG370400 Rh1CG383000 Rh1CG383100 Rh1CG383200 Rh1DG399900 Rh1DG400200
rosa_wichuraiana	Rw1G036050 Rw1G036060 Rw1G036070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	573
Acc16I	TGCGCA	1 cut(s)	407
Acc36I	ACCTGC	1 cut(s)	43
AciI	CCGC	1 cut(s)	656
AclWI	GGATC	3 cut(s)	344, 357, 435
AcoI	YGGCCR	1 cut(s)	291
AcuI	CTGAAG	1 cut(s)	264
AdeI	CACNNNGTG	2 cut(s)	510, 512
AfaI	GTAC	1 cut(s)	414
AfeI	AGCGCT	1 cut(s)	680
AgsI	TTSAA	3 cut(s)	88, 271, 545
AjuI	GAANNNNNNNTTGG	2 cut(s)	540, 572
AluBI	AGCT	7 cut(s)	103, 177, 284, 317, 391, 402, 433
AluI	AGCT	7 cut(s)	103, 177, 284, 317, 391, 402, 433
Alw26I	GTCTC	2 cut(s)	299, 629
AlwI	GGATC	3 cut(s)	344, 357, 435
Aor51HI	AGCGCT	1 cut(s)	680
AoxI	GGCC	2 cut(s)	291, 521
ApeKI	GCWGC	4 cut(s)	262, 563, 600, 603
ArsI	GACNNNNNNTTYG	2 cut(s)	117, 149
AseI	ATTAAT	1 cut(s)	615
AspLEI	GCGC	4 cut(s)	229, 408, 669, 681
AspS9I	GGNCC	1 cut(s)	653
AsuHPI	GGTGA	2 cut(s)	16, 34
AsuII	TTCGAA	1 cut(s)	65
AvaII	GGWCC	1 cut(s)	653
BalI	TGGCCA	1 cut(s)	293
BamHI	GGATCC	1 cut(s)	349
BbvI	GCAGC	4 cut(s)	274, 575, 612, 615
BccI	CCATC	1 cut(s)	295
BcoDI	GTCTC	2 cut(s)	299, 629
BfaI	CTAG	3 cut(s)	174, 311, 639
BfoI	RGCGCY	1 cut(s)	682
BfuAI	ACCTGC	1 cut(s)	43
BisI	GCNGC	4 cut(s)	263, 564, 601, 604
BlsI	GCNGC	4 cut(s)	264, 565, 602, 605
Bme18I	GGWCC	1 cut(s)	653
BmgT120I	GGNCC	1 cut(s)	653
BmiI	GGNNCC	2 cut(s)	351, 476
BmsI	GCATC	2 cut(s)	109, 654
Bpu14I	TTCGAA	1 cut(s)	65
BpuEI	CTTGAG	1 cut(s)	348
BsaI	GGTCTC	1 cut(s)	299
Bse1I	ACTGG	2 cut(s)	581, 659
BseGI	GGATG	1 cut(s)	585
BseMII	CTCAG	1 cut(s)	161
BseNI	ACTGG	2 cut(s)	581, 659
BseXI	GCAGC	4 cut(s)	274, 575, 612, 615
Bsh1285I	CGRYCG	1 cut(s)	397
BshFI	GGCC	2 cut(s)	293, 523
BsiEI	CGRYCG	1 cut(s)	397
BslFI	GGGAC	1 cut(s)	351
BsmAI	GTCTC	2 cut(s)	299, 629
BsmFI	GGGAC	1 cut(s)	351
BsmI	GAATGC	1 cut(s)	496
BsnI	GGCC	2 cut(s)	293, 523
Bso31I	GGTCTC	1 cut(s)	299
Bsp119I	TTCGAA	1 cut(s)	65
Bsp143I	GATC	4 cut(s)	349, 378, 427, 625
BspACI	CCGC	1 cut(s)	656
BspANI	GGCC	2 cut(s)	293, 523
BspCNI	CTCAG	1 cut(s)	160
BspLI	GGNNCC	2 cut(s)	351, 476
BspMI	ACCTGC	1 cut(s)	43
BspPI	GGATC	3 cut(s)	344, 357, 435
BspT104I	TTCGAA	1 cut(s)	65
BspTNI	GGTCTC	1 cut(s)	299
BsrI	ACTGG	2 cut(s)	581, 659
BssMI	GATC	4 cut(s)	349, 378, 427, 625
Bst4CI	ACNGT	2 cut(s)	255, 510
Bst6I	CTCTTC	1 cut(s)	480
BstAPI	GCANNNNNTGC	1 cut(s)	224
BstBI	TTCGAA	1 cut(s)	65
BstC8I	GCNNGC	4 cut(s)	50, 389, 404, 671
BstDEI	CTNAG	2 cut(s)	147, 481
BstF5I	GGATG	1 cut(s)	585
BstH2I	RGCGCY	1 cut(s)	682
BstHHI	GCGC	4 cut(s)	229, 408, 669, 681
BstKTI	GATC	4 cut(s)	352, 381, 430, 628
BstMAI	GTCTC	2 cut(s)	299, 629
BstMBI	GATC	4 cut(s)	349, 378, 427, 625
BstMCI	CGRYCG	1 cut(s)	397
BstMWI	GCNNNNNNNGC	5 cut(s)	128, 224, 271, 290, 664
BstNSI	RCATGY	2 cut(s)	187, 218
BstV1I	GCAGC	4 cut(s)	274, 575, 612, 615
BstX2I	RGATCY	1 cut(s)	349
BstXI	CCANNNNNNTGG	1 cut(s)	301
BstYI	RGATCY	1 cut(s)	349
BsuRI	GGCC	2 cut(s)	293, 523
BtgZI	GCGATG	1 cut(s)	132
BtsCI	GGATG	1 cut(s)	585
BtsIMutI	CAGTG	2 cut(s)	515, 666
BveI	ACCTGC	1 cut(s)	43
Cac8I	GCNNGC	4 cut(s)	50, 389, 404, 671
CfoI	GCGC	4 cut(s)	229, 408, 669, 681
Cfr13I	GGNCC	1 cut(s)	653
CpoI	CGGWCCG	1 cut(s)	653
Csp6I	GTAC	1 cut(s)	413
CspI	CGGWCCG	1 cut(s)	653
CviAII	CATG	5 cut(s)	184, 215, 275, 289, 341
CviQI	GTAC	1 cut(s)	413
DdeI	CTNAG	2 cut(s)	147, 481
DpnI	GATC	4 cut(s)	351, 380, 429, 627
DpnII	GATC	4 cut(s)	349, 378, 427, 625
DraIII	CACNNNGTG	2 cut(s)	510, 512
EaeI	YGGCCR	1 cut(s)	291
Eam1104I	CTCTTC	1 cut(s)	480
EarI	CTCTTC	1 cut(s)	480
Eco147I	AGGCCT	1 cut(s)	523
Eco31I	GGTCTC	1 cut(s)	299
Eco47I	GGWCC	1 cut(s)	653
Eco47III	AGCGCT	1 cut(s)	680
Eco57I	CTGAAG	1 cut(s)	264
FaeI	CATG	5 cut(s)	187, 218, 278, 292, 344
FaqI	GGGAC	1 cut(s)	351
FatI	CATG	5 cut(s)	183, 214, 274, 288, 340
Fnu4HI	GCNGC	4 cut(s)	263, 564, 601, 604
FokI	GGATG	1 cut(s)	592
Fsp4HI	GCNGC	4 cut(s)	263, 564, 601, 604
FspBI	CTAG	3 cut(s)	174, 311, 639
FspI	TGCGCA	1 cut(s)	407
GlaI	GCGC	4 cut(s)	228, 407, 668, 680
GluI	GCNGC	4 cut(s)	263, 564, 601, 604
HaeII	RGCGCY	1 cut(s)	682
HaeIII	GGCC	2 cut(s)	293, 523
HhaI	GCGC	4 cut(s)	229, 408, 669, 681
Hin1II	CATG	5 cut(s)	187, 218, 278, 292, 344
Hin6I	GCGC	4 cut(s)	227, 406, 667, 679
HinP1I	GCGC	4 cut(s)	227, 406, 667, 679
HindIII	AAGCTT	2 cut(s)	315, 400
HinfI	GANTC	2 cut(s)	30, 278
HphI	GGTGA	2 cut(s)	16, 34
Hpy188I	TCNGA	6 cut(s)	150, 181, 378, 531, 625, 653
Hpy188III	TCNNGA	2 cut(s)	365, 545
Hpy99I	CGWCG	1 cut(s)	75
HpyAV	CCTTC	1 cut(s)	85
HpyCH4III	ACNGT	2 cut(s)	255, 510
HpyCH4IV	ACGT	1 cut(s)	70
HpyCH4V	TGCA	8 cut(s)	131, 187, 218, 262, 494, 518, 673, 697
HpyF10VI	GCNNNNNNNGC	5 cut(s)	128, 224, 271, 290, 664
HpyF3I	CTNAG	2 cut(s)	147, 481
HpySE526I	ACGT	1 cut(s)	70
Hsp92II	CATG	5 cut(s)	187, 218, 278, 292, 344
HspAI	GCGC	4 cut(s)	227, 406, 667, 679
Kzo9I	GATC	4 cut(s)	349, 378, 427, 625
LmnI	GCTCC	2 cut(s)	182, 442
LpnPI	CCDG	7 cut(s)	34, 38, 142, 401, 562, 614, 672
Lsp1109I	GCAGC	4 cut(s)	274, 575, 612, 615
LweI	GCATC	2 cut(s)	109, 654
MaeI	CTAG	3 cut(s)	174, 311, 639
MaeII	ACGT	1 cut(s)	70
MalI	GATC	4 cut(s)	351, 380, 429, 627
MboI	GATC	4 cut(s)	349, 378, 427, 625
MboII	GAAGA	4 cut(s)	25, 100, 310, 497
MfeI	CAATTG	1 cut(s)	266
MflI	RGATCY	1 cut(s)	349
MlsI	TGGCCA	1 cut(s)	293
MluCI	AATT	3 cut(s)	266, 612, 619
MluNI	TGGCCA	1 cut(s)	293
MmeI	TCCRAC	1 cut(s)	204
MnlI	CCTC	4 cut(s)	13, 321, 465, 488
Mox20I	TGGCCA	1 cut(s)	293
MscI	TGGCCA	1 cut(s)	293
MseI	TTAA	2 cut(s)	437, 615
Msp20I	TGGCCA	1 cut(s)	293
MspA1I	CMGCKG	1 cut(s)	284
MunI	CAATTG	1 cut(s)	266
Mva1269I	GAATGC	1 cut(s)	496
MwoI	GCNNNNNNNGC	5 cut(s)	128, 224, 271, 290, 664
NdeII	GATC	4 cut(s)	349, 378, 427, 625
NlaIII	CATG	5 cut(s)	187, 218, 278, 292, 344
NlaIV	GGNNCC	2 cut(s)	351, 476
NsbI	TGCGCA	1 cut(s)	407
NspI	RCATGY	2 cut(s)	187, 218
NspV	TTCGAA	1 cut(s)	65
PceI	AGGCCT	1 cut(s)	523
PctI	GAATGC	1 cut(s)	496
PfeI	GAWTC	2 cut(s)	30, 278
PkrI	GCNGC	4 cut(s)	264, 565, 602, 605
PshBI	ATTAAT	1 cut(s)	615
PsiI	TTATAA	1 cut(s)	573
PspN4I	GGNNCC	2 cut(s)	351, 476
PspPI	GGNCC	1 cut(s)	653
PsuI	RGATCY	1 cut(s)	349
PvuII	CAGCTG	1 cut(s)	284
RsaI	GTAC	1 cut(s)	414
RsaNI	GTAC	1 cut(s)	413
Rsr2I	CGGWCCG	1 cut(s)	653
RsrII	CGGWCCG	1 cut(s)	653
SaqAI	TTAA	2 cut(s)	437, 615
SatI	GCNGC	4 cut(s)	263, 564, 601, 604
Sau3AI	GATC	4 cut(s)	349, 378, 427, 625
Sau96I	GGNCC	1 cut(s)	653
SfaNI	GCATC	2 cut(s)	109, 654
SfuI	TTCGAA	1 cut(s)	65
SinI	GGWCC	1 cut(s)	653
SmlI	CTYRAG	1 cut(s)	363
SmoI	CTYRAG	1 cut(s)	363
Sse9I	AATT	3 cut(s)	266, 612, 619
SseBI	AGGCCT	1 cut(s)	523
SsiI	CCGC	1 cut(s)	656
SspMI	CTAG	3 cut(s)	174, 311, 639
StuI	AGGCCT	1 cut(s)	523
TaaI	ACNGT	2 cut(s)	255, 510
TaiI	ACGT	1 cut(s)	73
TaqI	TCGA	4 cut(s)	33, 65, 73, 393
TaqII	GACCGA	1 cut(s)	411
TasI	AATT	3 cut(s)	266, 612, 619
TfiI	GAWTC	2 cut(s)	30, 278
Tru1I	TTAA	2 cut(s)	437, 615
Tru9I	TTAA	2 cut(s)	437, 615
TscAI	CASTG	2 cut(s)	515, 666
TseI	GCWGC	4 cut(s)	262, 563, 600, 603
TspDTI	ATGAA	3 cut(s)	291, 596, 637
TspGWI	ACGGA	2 cut(s)	340, 455
TspRI	CASTG	2 cut(s)	515, 666
VpaK11BI	GGWCC	1 cut(s)	653
VspI	ATTAAT	1 cut(s)	615
XceI	RCATGY	2 cut(s)	187, 218
XspI	CTAG	3 cut(s)	174, 311, 639

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.