Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004273

Physical Location & Seq

Genomic Coordinates Reverse (-)

84005 .. 84283

Gene Structure 279 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

ATCG00820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

GTGACACGTTCACTAAAAAAAAACCCTTTTGTAGCAAAGCATTTATTAAGAAAAATAGAGAAGCTTAATACAAAGGCGGAAAAAGAAATCATAATAACTTGGTCCCGGGCATCCACCATTATACCCACAATGATTGGCCATACGATCGCTATTCATAATGGAAGGGAACACTTACCCGTTTATATAATAGATCTTATGGTAGGACATAAATTAGGAGAATTTTCACCTACTATAAATTTTCGAGGACATGCCAAAAATGATAATAGATCTCGTCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006996 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0015935 GO:0016043 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0032991 GO:0034622 GO:0042254 GO:0042255 GO:0042274 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0065003 GO:0070925 GO:0071826 GO:0071840 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S19

Protein Analysis

92

Amino Acids

10.61

Weight (kDa)

10.77

Isoelectric Point (pI)

40.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S19	PF00203	3 - 83	9.3e-34	Ribosomal protein S19

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004273)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG00820
fragaria_vesca	FvH4_6g09000
malus_domestica	MD15G1364200.v1.1
prunus_persica	Prupe.4G266600_v2.0.a1
pyrus_communis	pycom16g20490 pycom16g20550
rosa_chinensis	RchiOBHm_Chr1g0329571 RchiOBHm_Chr2g0102151 RchiOBHm_Chr2g0118431 RchiOBHm_Chr2g0118441 RchiOBHm_Chr2g0118451 RchiOBHm_Chr2g0118501 RchiOBHm_Chr2g0118531 RchiOBHm_CPg0501801 RchiOBHm_CPg0501831 RchiOBHm_CPg0502611
rosa_laevigata	RLG00000000006 RLG00000000213 RLG00000000240 RLG00000000256 RLG00000002780
rosa_samantha	Rh1AG125000 Rh1BG209500 Rh1CG032300 Rh1DG236100 Rh1DG236200 Rh1DG236300 Rh2CG158500 Rh2DG300400 Rh2DG300500 Rh3BG145300
rosa_wichuraiana	Rw3G020690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	77
AcoI	YGGCCR	1 cut(s)	136
AcsI	RAATTY	2 cut(s)	218, 235
AflIII	ACRYGT	1 cut(s)	5
AluBI	AGCT	1 cut(s)	64
AluI	AGCT	1 cut(s)	64
Ama87I	CYCGRG	1 cut(s)	105
AoxI	GGCC	1 cut(s)	136
ApoI	RAATTY	2 cut(s)	218, 235
AspS9I	GGNCC	1 cut(s)	102
AsuC2I	CCSGG	2 cut(s)	106, 107
AsuHPI	GGTGA	1 cut(s)	216
AvaI	CYCGRG	1 cut(s)	105
AvaII	GGWCC	1 cut(s)	102
BalI	TGGCCA	1 cut(s)	138
BcnI	CCSGG	2 cut(s)	106, 107
BglII	AGATCT	2 cut(s)	190, 266
Bme1390I	CCNGG	2 cut(s)	106, 107
Bme18I	GGWCC	1 cut(s)	102
BmeT110I	CYCGRG	1 cut(s)	105
BmgT120I	GGNCC	1 cut(s)	102
BmiI	GGNNCC	1 cut(s)	104
BmrFI	CCNGG	2 cut(s)	106, 107
BmsI	GCATC	1 cut(s)	119
BpuMI	CCSGG	2 cut(s)	106, 107
BsaJI	CCNNGG	1 cut(s)	105
BseDI	CCNNGG	1 cut(s)	105
BseGI	GGATG	1 cut(s)	110
Bsh1285I	CGRYCG	1 cut(s)	147
BshFI	GGCC	1 cut(s)	138
BsiEI	CGRYCG	1 cut(s)	147
BsiHKCI	CYCGRG	1 cut(s)	105
BsiSI	CCGG	1 cut(s)	106
BslFI	GGGAC	1 cut(s)	88
BsmFI	GGGAC	1 cut(s)	88
BsnI	GGCC	1 cut(s)	138
BsoBI	CYCGRG	1 cut(s)	105
Bsp143I	GATC	3 cut(s)	144, 190, 266
BspACI	CCGC	1 cut(s)	77
BspANI	GGCC	1 cut(s)	138
BspLI	GGNNCC	1 cut(s)	104
BssECI	CCNNGG	1 cut(s)	105
BssMI	GATC	3 cut(s)	144, 190, 266
BstF5I	GGATG	1 cut(s)	110
BstKTI	GATC	3 cut(s)	147, 193, 269
BstMBI	GATC	3 cut(s)	144, 190, 266
BstMCI	CGRYCG	1 cut(s)	147
BstNSI	RCATGY	1 cut(s)	251
BstSCI	CCNGG	2 cut(s)	104, 105
BstX2I	RGATCY	2 cut(s)	190, 266
BstYI	RGATCY	2 cut(s)	190, 266
BsuRI	GGCC	1 cut(s)	138
BtsCI	GGATG	1 cut(s)	110
Cfr13I	GGNCC	1 cut(s)	102
Cfr9I	CCCGGG	1 cut(s)	105
CspCI	CAANNNNNGTGG	2 cut(s)	115, 150
CviAII	CATG	1 cut(s)	248
CviJI	RGCY	2 cut(s)	64, 138
CviKI_1	RGCY	2 cut(s)	64, 138
DpnI	GATC	3 cut(s)	146, 192, 268
DpnII	GATC	3 cut(s)	144, 190, 266
EaeI	YGGCCR	1 cut(s)	136
EciI	GGCGGA	1 cut(s)	92
Eco47I	GGWCC	1 cut(s)	102
Eco88I	CYCGRG	1 cut(s)	105
FaeI	CATG	1 cut(s)	251
FaqI	GGGAC	1 cut(s)	88
FatI	CATG	1 cut(s)	247
FokI	GGATG	1 cut(s)	97
HaeIII	GGCC	1 cut(s)	138
HapII	CCGG	1 cut(s)	106
Hin1II	CATG	1 cut(s)	251
HindIII	AAGCTT	1 cut(s)	62
HpaII	CCGG	1 cut(s)	106
HphI	GGTGA	1 cut(s)	216
Hpy166II	GTNNAC	1 cut(s)	11
Hpy8I	GTNNAC	1 cut(s)	11
Hpy99I	CGWCG	1 cut(s)	276
HpyAV	CCTTC	1 cut(s)	156
HpyCH4IV	ACGT	1 cut(s)	7
HpySE526I	ACGT	1 cut(s)	7
Hsp92II	CATG	1 cut(s)	251
Kzo9I	GATC	3 cut(s)	144, 190, 266
LpnPI	CCDG	1 cut(s)	119
LweI	GCATC	1 cut(s)	119
MaeII	ACGT	1 cut(s)	7
MalI	GATC	3 cut(s)	146, 192, 268
MboI	GATC	3 cut(s)	144, 190, 266
MflI	RGATCY	2 cut(s)	190, 266
MlsI	TGGCCA	1 cut(s)	138
MluCI	AATT	3 cut(s)	209, 218, 235
MluNI	TGGCCA	1 cut(s)	138
MnlI	CCTC	1 cut(s)	236
Mox20I	TGGCCA	1 cut(s)	138
MscI	TGGCCA	1 cut(s)	138
MseI	TTAA	3 cut(s)	47, 66, 277
Msp20I	TGGCCA	1 cut(s)	138
MspI	CCGG	1 cut(s)	106
MspR9I	CCNGG	2 cut(s)	106, 107
NciI	CCSGG	2 cut(s)	106, 107
NdeII	GATC	3 cut(s)	144, 190, 266
NlaIII	CATG	1 cut(s)	251
NlaIV	GGNNCC	1 cut(s)	104
NspI	RCATGY	1 cut(s)	251
Ple19I	CGATCG	1 cut(s)	147
PspN4I	GGNNCC	1 cut(s)	104
PspPI	GGNCC	1 cut(s)	102
PsuI	RGATCY	2 cut(s)	190, 266
PvuI	CGATCG	1 cut(s)	147
SaqAI	TTAA	3 cut(s)	47, 66, 277
Sau3AI	GATC	3 cut(s)	144, 190, 266
Sau96I	GGNCC	1 cut(s)	102
ScrFI	CCNGG	2 cut(s)	106, 107
SetI	ASST	3 cut(s)	10, 66, 229
SfaNI	GCATC	1 cut(s)	119
SgeI	CNNG	8 cut(s)	18, 111, 117, 118, 119, 188, 254, 260
SinI	GGWCC	1 cut(s)	102
SmaI	CCCGGG	1 cut(s)	107
Sse9I	AATT	3 cut(s)	209, 218, 235
SsiI	CCGC	1 cut(s)	77
StyD4I	CCNGG	2 cut(s)	104, 105
TaiI	ACGT	1 cut(s)	10
TaqI	TCGA	1 cut(s)	241
TasI	AATT	3 cut(s)	209, 218, 235
Tru1I	TTAA	3 cut(s)	47, 66, 277
Tru9I	TTAA	3 cut(s)	47, 66, 277
TspDTI	ATGAA	1 cut(s)	143
TspMI	CCCGGG	1 cut(s)	105
VpaK11BI	GGWCC	1 cut(s)	102
XapI	RAATTY	2 cut(s)	218, 235
XceI	RCATGY	1 cut(s)	251
XmaI	CCCGGG	1 cut(s)	105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.