Rh1DG236300

function. Its presence in a non-photosynthetic plant (Epifagus virginiana) and experiments in tobacco indicate that it has an essential function which is probably not related to photosynthesis

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0004273
Physical Location & Seq
Reverse (-)
44968484 .. 44969932
1449 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG236300.1

Sequence Viewer

Length: 1449 bp
ATGCCTTTCTGGATATTCCTCAATGTCCCGGCTATTCACGAACGTGAGAAGCAGATGAATAAGCATCTGCTTCCGGAAGAAATCGAAGAATTTCTTGGGAATCCTACAAGATCCCTTCGTTCTTTTTTCTCTGACAGATGGTCAGAACTTCATCTGGGTTCGAATCCTACTGAGAGGTCCACTAGAGATCAGAAATTGTTGAAGAAAGAACAAGATGTTTCTTTTGTCCCTTCCAGGCGATCGGAAAATAAAGAAATAGTTAATATATTCAAGATAATTACGTATTTACAAAATACCGTCTCAATTCATCCTATTTCATCAGATCCGGGATGTGATATGGTTCCAAAGGATGAACTGGACAGTTCCAATAAGATTTCATTCTTGAACAAAAATCTATTTTGTGATTTATTTCATCTATTGCATGACCGGAACAGGGGGGGATACACGTTACACCACGATTTTGAATCAGAAGAGAGATTTCAAGAAATGGCAGATCTATTCACTCTATCAATAACCGAGCCGGATCCGTTATATCATAAGGGATTTGCCTTTTCTATTGATTCCTACGGATTGGATCAAAAACAATTCTTGAATGAGGTATTCAACTCCAGGGATGAATCGAAAAAGAAATCTTTATTGGTTCTACCTCCTATTTTTTATGAAGAGAATGAATCTTTTTATCGAAGGATCAGAAAAAAATGGGTCCGGACCTCCTGCGGGAATGATTTGGAAGATCCAAAACCAAAAATAGTGGTATTTGCTAGCAACAACATAATGGAGGCAGTCAATCAATATAGATTGATCCGAAATCTGATTCAAATCCAATATAGCACCTATGGGTACATAAGAAATGTATTGAATCGATTCTTTTTAATGAATAGATCCGATTGCAACTACAAATATGGAATTCAAAGGGATCAAATAGAAAATGATACTCTGAATCATAGAACTATAATGAAATATACGATCAACCAACATTTATCAAATTTGAAAAAGAGTCAGAAGAAATGGTTCGATCCTCTTATTTTTATTTCTCGAACCGAGAGATCCATGAATCGGGATCCTAATGCATATAGATACAAATGGTCCAATGGGAGCAAGAAGTTACAGGAACATTTGGAACATTTCATTTCTGAGCAGAAGAGCCATTTTCATTTTCAAGTAGTCGATCGATTACGTATTAATCAATATTCGATTGATTGGTCTGAGGTTATCGACAAAAAAGATTTGTCTAAGTCACTTCCTTTCTTTTTGTCCAAGTTACTTCTTTTTTTGTCCAAGTTTCTTCTCTTTTTGTCTAACTCACTTCCTTTTTTCTTTATGAGTTTCGGGAATATCCCCATTTATAGGTCCGAGATCCACATATATGAATTGAAAGGTCCTAATGATCAACTCTGCAATCAGTTGTTAGAATCAATAGGTCTTCAAATTGTTCATTTGAAAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA DUF825

Protein Analysis

482

Amino Acids

57.42

Weight (kDa)

8.79

Isoelectric Point (pI)

47.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ycf2 PF05695 13 - 481 0.0 Ycf2 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 2 cut(s) 73, 705
AciI CCGC 1 cut(s) 717
AcsI RAATTY 3 cut(s) 89, 906, 985
AfaI GTAC 1 cut(s) 842
AfiI CCNNNNNNNGG 4 cut(s) 433, 717, 1056, 1347
AflIII ACRYGT 1 cut(s) 444
AhdI GACNNNNNGTC 1 cut(s) 139
AjnI CCWGG 2 cut(s) 233, 608
AjuI GAANNNNNNNTTGG 4 cut(s) 78, 110, 620, 652
AleI CACNNNNGTG 1 cut(s) 42
Alw26I GTCTC 1 cut(s) 304
Aor13HI TCCGGA 2 cut(s) 73, 705
ApoI RAATTY 3 cut(s) 89, 906, 985
AseI ATTAAT 1 cut(s) 1182
Asp700I GAANNNNTTC 3 cut(s) 90, 863, 1010
AspS9I GGNCC 6 cut(s) 177, 703, 708, 1086, 1350, 1379
AsuC2I CCSGG 2 cut(s) 29, 327
AsuII TTCGAA 1 cut(s) 161
AsuNHI GCTAGC 1 cut(s) 761
AvaII GGWCC 6 cut(s) 177, 703, 708, 1086, 1350, 1379
BamHI GGATCC 2 cut(s) 523, 1060
BbsI GAAGAC 1 cut(s) 1415
BccI CCATC 1 cut(s) 132
BciT130I CCWGG 2 cut(s) 235, 610
BciVI GTATCC 1 cut(s) 434
BclI TGATCA 1 cut(s) 1387
BcnI CCSGG 2 cut(s) 29, 327
BcoDI GTCTC 1 cut(s) 304
BfaI CTAG 2 cut(s) 183, 762
BfuI GTATCC 1 cut(s) 434
BglII AGATCT 1 cut(s) 493
Bme1390I CCNGG 4 cut(s) 29, 235, 327, 610
Bme18I GGWCC 6 cut(s) 177, 703, 708, 1086, 1350, 1379
BmeRI GACNNNNNGTC 1 cut(s) 139
BmgT120I GGNCC 6 cut(s) 177, 703, 708, 1086, 1350, 1379
BmiI GGNNCC 4 cut(s) 342, 525, 704, 1062
BmrFI CCNGG 4 cut(s) 29, 235, 327, 610
BmsI GCATC 1 cut(s) 73
BmtI GCTAGC 1 cut(s) 765
BpiI GAAGAC 1 cut(s) 1415
BpmI CTGGAG 1 cut(s) 592
Bpu14I TTCGAA 1 cut(s) 161
BpuMI CCSGG 2 cut(s) 29, 327
Bsa29I ATCGAT 2 cut(s) 862, 1171
BsaAI YACGTR 2 cut(s) 282, 1178
BsaBI GATNNNNATC 1 cut(s) 818
BsaJI CCNNGG 1 cut(s) 609
BsaWI WCCGGW 3 cut(s) 73, 426, 705
Bsc4I CCNNNNNNNGG 4 cut(s) 433, 717, 1056, 1347
Bse1I ACTGG 1 cut(s) 360
Bse8I GATNNNNATC 1 cut(s) 818
BseAI TCCGGA 2 cut(s) 73, 705
BseBI CCWGG 2 cut(s) 235, 610
BseCI ATCGAT 2 cut(s) 862, 1171
BseDI CCNNGG 1 cut(s) 609
BseGI GGATG 4 cut(s) 307, 335, 355, 619
BseJI GATNNNNATC 1 cut(s) 818
BseLI CCNNNNNNNGG 4 cut(s) 433, 717, 1056, 1347
BseMII CTCAG 3 cut(s) 162, 1125, 1197
BseNI ACTGG 1 cut(s) 360
Bsh1285I CGRYCG 2 cut(s) 242, 1171
BshVI ATCGAT 2 cut(s) 862, 1171
BsiEI CGRYCG 2 cut(s) 242, 1171
BsiSI CCGG 6 cut(s) 29, 74, 326, 427, 521, 706
BslFI GGGAC 2 cut(s) 11, 212
BslI CCNNNNNNNGG 4 cut(s) 433, 717, 1056, 1347
BsmAI GTCTC 1 cut(s) 304
BsmBI CGTCTC 1 cut(s) 304
BsmFI GGGAC 2 cut(s) 11, 212
Bsp119I TTCGAA 1 cut(s) 161
Bsp13I TCCGGA 2 cut(s) 73, 705
BspACI CCGC 1 cut(s) 717
BspCNI CTCAG 3 cut(s) 163, 1126, 1198
BspDI ATCGAT 2 cut(s) 862, 1171
BspEI TCCGGA 2 cut(s) 73, 705
BspLI GGNNCC 4 cut(s) 342, 525, 704, 1062
BspOI GCTAGC 1 cut(s) 765
BspQI GCTCTTC 1 cut(s) 1136
BspT104I TTCGAA 1 cut(s) 161
BsrI ACTGG 1 cut(s) 360
BssECI CCNNGG 1 cut(s) 609
Bst2UI CCWGG 2 cut(s) 235, 610
Bst4CI ACNGT 2 cut(s) 298, 362
Bst6I CTCTTC 3 cut(s) 465, 657, 1136
BstBAI YACGTR 2 cut(s) 282, 1178
BstBI TTCGAA 1 cut(s) 161
BstC8I GCNNGC 1 cut(s) 763
BstDEI CTNAG 4 cut(s) 171, 1134, 1206, 1233
BstF5I GGATG 4 cut(s) 307, 335, 355, 619
BstMAI GTCTC 1 cut(s) 304
BstMCI CGRYCG 2 cut(s) 242, 1171
BstNI CCWGG 2 cut(s) 235, 610
BstSCI CCNGG 4 cut(s) 27, 233, 325, 608
BstSNI TACGTA 2 cut(s) 282, 1178
BstV2I GAAGAC 1 cut(s) 1415
BstX2I RGATCY 9 cut(s) 110, 322, 493, 523, 733, 881, 1046, 1060, 1356
BstYI RGATCY 9 cut(s) 110, 322, 493, 523, 733, 881, 1046, 1060, 1356
Bsu15I ATCGAT 2 cut(s) 862, 1171
BsuI GTATCC 1 cut(s) 434
BsuTUI ATCGAT 2 cut(s) 862, 1171
BtsCI GGATG 4 cut(s) 307, 335, 355, 619
Cac8I GCNNGC 1 cut(s) 763
Cfr13I GGNCC 6 cut(s) 177, 703, 708, 1086, 1350, 1379
ClaI ATCGAT 2 cut(s) 862, 1171
Csp6I GTAC 1 cut(s) 841
CspCI CAANNNNNGTGG 2 cut(s) 732, 767
CviAII CATG 2 cut(s) 422, 1051
CviJI RGCY 3 cut(s) 32, 520, 1146
CviKI_1 RGCY 3 cut(s) 32, 520, 1146
CviQI GTAC 1 cut(s) 841
DdeI CTNAG 4 cut(s) 171, 1134, 1206, 1233
DriI GACNNNNNGTC 1 cut(s) 139
Eam1104I CTCTTC 3 cut(s) 465, 657, 1136
Eam1105I GACNNNNNGTC 1 cut(s) 139
EarI CTCTTC 3 cut(s) 465, 657, 1136
Eco105I TACGTA 2 cut(s) 282, 1178
Eco47I GGWCC 6 cut(s) 177, 703, 708, 1086, 1350, 1379
EcoO109I RGGNCCY 1 cut(s) 1379
EcoRI GAATTC 1 cut(s) 906
EcoRII CCWGG 2 cut(s) 233, 608
EcoT22I ATGCAT 1 cut(s) 1072
Esp3I CGTCTC 1 cut(s) 304
FaeI CATG 2 cut(s) 425, 1054
FalI AAGNNNNNCTT 2 cut(s) 78, 110
FaqI GGGAC 2 cut(s) 11, 212
FatI CATG 2 cut(s) 421, 1050
FauI CCCGC 1 cut(s) 710
FbaI TGATCA 1 cut(s) 1387
FokI GGATG 4 cut(s) 294, 342, 362, 626
FspBI CTAG 2 cut(s) 183, 762
GsuI CTGGAG 1 cut(s) 592
HapII CCGG 6 cut(s) 29, 74, 326, 427, 521, 706
Hin1II CATG 2 cut(s) 425, 1054
HpaII CCGG 6 cut(s) 29, 74, 326, 427, 521, 706
Hpy166II GTNNAC 1 cut(s) 180
Hpy8I GTNNAC 1 cut(s) 180
HpyAV CCTTC 3 cut(s) 125, 240, 678
HpyCH4III ACNGT 2 cut(s) 298, 362
HpyCH4IV ACGT 4 cut(s) 43, 281, 446, 1177
HpyCH4V TGCA 4 cut(s) 421, 891, 1070, 1398
HpyF3I CTNAG 4 cut(s) 171, 1134, 1206, 1233
HpySE526I ACGT 4 cut(s) 43, 281, 446, 1177
Hsp92II CATG 2 cut(s) 425, 1054
Kpn2I TCCGGA 2 cut(s) 73, 705
Ksp22I TGATCA 1 cut(s) 1387
LguI GCTCTTC 1 cut(s) 1136
LmnI GCTCC 1 cut(s) 1095
LweI GCATC 1 cut(s) 73
MaeI CTAG 2 cut(s) 183, 762
MaeII ACGT 4 cut(s) 43, 281, 446, 1177
MaeIII GTNAC 4 cut(s) 447, 1104, 1236, 1260
MflI RGATCY 9 cut(s) 110, 322, 493, 523, 733, 881, 1046, 1060, 1356
MlyI GAGTC 1 cut(s) 1006
MnlI CCTC 8 cut(s) 29, 168, 589, 657, 721, 772, 1029, 1201
Mph1103I ATGCAT 1 cut(s) 1072
MroI TCCGGA 2 cut(s) 73, 705
MroXI GAANNNNTTC 3 cut(s) 90, 863, 1010
MseI TTAA 3 cut(s) 261, 872, 1182
MslI CAYNNNNRTG 2 cut(s) 42, 1365
MspI CCGG 6 cut(s) 29, 74, 326, 427, 521, 706
MspR9I CCNGG 4 cut(s) 29, 235, 327, 610
MvaI CCWGG 2 cut(s) 235, 610
NciI CCSGG 2 cut(s) 29, 327
NheI GCTAGC 1 cut(s) 761
NlaIII CATG 2 cut(s) 425, 1054
NlaIV GGNNCC 4 cut(s) 342, 525, 704, 1062
NmuCI GTSAC 1 cut(s) 1236
NsiI ATGCAT 1 cut(s) 1072
NspV TTCGAA 1 cut(s) 161
OliI CACNNNNGTG 1 cut(s) 42
PciSI GCTCTTC 1 cut(s) 1136
PdmI GAANNNNTTC 3 cut(s) 90, 863, 1010
PfoI TCCNGGA 1 cut(s) 325
Ple19I CGATCG 2 cut(s) 242, 1171
PleI GAGTC 1 cut(s) 1005
PpsI GAGTC 1 cut(s) 1005
Ppu21I YACGTR 2 cut(s) 282, 1178
PpuMI RGGWCCY 1 cut(s) 1379
PshBI ATTAAT 1 cut(s) 1182
Psp5II RGGWCCY 1 cut(s) 1379
Psp6I CCWGG 2 cut(s) 233, 608
PspGI CCWGG 2 cut(s) 233, 608
PspN4I GGNNCC 4 cut(s) 342, 525, 704, 1062
PspPI GGNCC 6 cut(s) 177, 703, 708, 1086, 1350, 1379
PspPPI RGGWCCY 1 cut(s) 1379
PsuI RGATCY 9 cut(s) 110, 322, 493, 523, 733, 881, 1046, 1060, 1356
PvuI CGATCG 2 cut(s) 242, 1171
RsaI GTAC 1 cut(s) 842
RsaNI GTAC 1 cut(s) 841
RseI CAYNNNNRTG 2 cut(s) 42, 1365
SapI GCTCTTC 1 cut(s) 1136
SaqAI TTAA 3 cut(s) 261, 872, 1182
Sau96I GGNCC 6 cut(s) 177, 703, 708, 1086, 1350, 1379
SchI GAGTC 1 cut(s) 1006
ScrFI CCNGG 4 cut(s) 29, 235, 327, 610
SfaNI GCATC 1 cut(s) 73
SfuI TTCGAA 1 cut(s) 161
SinI GGWCC 6 cut(s) 177, 703, 708, 1086, 1350, 1379
SmiMI CAYNNNNRTG 2 cut(s) 42, 1365
SnaBI TACGTA 2 cut(s) 282, 1178
SsiI CCGC 1 cut(s) 717
SspI AATATT 1 cut(s) 1190
SspMI CTAG 2 cut(s) 183, 762
StyD4I CCNGG 4 cut(s) 27, 233, 325, 608
TaaI ACNGT 2 cut(s) 298, 362
TaiI ACGT 4 cut(s) 46, 284, 449, 1180
Tru1I TTAA 3 cut(s) 261, 872, 1182
Tru9I TTAA 3 cut(s) 261, 872, 1182
TseFI GTSAC 1 cut(s) 1236
Tsp45I GTSAC 1 cut(s) 1236
TspGWI ACGGA 2 cut(s) 516, 582
VpaK11BI GGWCC 6 cut(s) 177, 703, 708, 1086, 1350, 1379
VspI ATTAAT 1 cut(s) 1182
XapI RAATTY 3 cut(s) 89, 906, 985
XmnI GAANNNNTTC 3 cut(s) 90, 863, 1010
XspI CTAG 2 cut(s) 183, 762
Zsp2I ATGCAT 1 cut(s) 1072
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.