function. Its presence in a non-photosynthetic plant (Epifagus virginiana) and experiments in tobacco indicate that it has an essential function which is probably not related to photosynthesis
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | ATCG00820 |
| fragaria_vesca | FvH4_6g09000 |
| malus_domestica | MD15G1364200.v1.1 |
| prunus_persica | Prupe.4G266600_v2.0.a1 |
| pyrus_communis | pycom16g20490 pycom16g20550 |
| rosa_chinensis | RchiOBHm_Chr1g0329571 RchiOBHm_Chr2g0102151 RchiOBHm_Chr2g0118431 RchiOBHm_Chr2g0118441 RchiOBHm_Chr2g0118451 RchiOBHm_Chr2g0118501 RchiOBHm_Chr2g0118531 RchiOBHm_CPg0501801 RchiOBHm_CPg0501831 RchiOBHm_CPg0502611 |
| rosa_laevigata | RLG00000000006 RLG00000000213 RLG00000000240 RLG00000000256 RLG00000002780 |
| rosa_samantha | Rh1AG125000 Rh1BG209500 Rh1CG032300 Rh1DG236100 Rh1DG236200 Rh1DG236300 Rh2CG158500 Rh2DG300400 Rh2DG300500 Rh3BG145300 |
| rosa_wichuraiana | Rw3G020690 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 149 |
| AfaI | GTAC | 1 cut(s) | 123 |
| AlwI | GGATC | 1 cut(s) | 149 |
| BciVI | GTATCC | 1 cut(s) | 101 |
| BfuI | GTATCC | 1 cut(s) | 101 |
| BglII | AGATCT | 1 cut(s) | 28 |
| Bsp1407I | TGTACA | 1 cut(s) | 121 |
| Bsp143I | GATC | 2 cut(s) | 28, 154 |
| BspPI | GGATC | 1 cut(s) | 149 |
| BsrGI | TGTACA | 1 cut(s) | 121 |
| BssMI | GATC | 2 cut(s) | 28, 154 |
| Bst4CI | ACNGT | 1 cut(s) | 118 |
| BstAUI | TGTACA | 1 cut(s) | 121 |
| BstKTI | GATC | 2 cut(s) | 31, 157 |
| BstMBI | GATC | 2 cut(s) | 28, 154 |
| BstX2I | RGATCY | 2 cut(s) | 28, 154 |
| BstYI | RGATCY | 2 cut(s) | 28, 154 |
| BsuI | GTATCC | 1 cut(s) | 101 |
| Csp6I | GTAC | 1 cut(s) | 122 |
| CviAII | CATG | 2 cut(s) | 86, 186 |
| CviQI | GTAC | 1 cut(s) | 122 |
| DpnI | GATC | 2 cut(s) | 30, 156 |
| DpnII | GATC | 2 cut(s) | 28, 154 |
| FaeI | CATG | 2 cut(s) | 89, 189 |
| FaiI | YATR | 9 cut(s) | 7, 9, 19, 87, 102, 152, 171, 173, 187 |
| FatI | CATG | 2 cut(s) | 85, 185 |
| Hin1II | CATG | 2 cut(s) | 89, 189 |
| HinfI | GANTC | 2 cut(s) | 60, 82 |
| Hpy188I | TCNGA | 1 cut(s) | 81 |
| HpyAV | CCTTC | 1 cut(s) | 105 |
| HpyCH4III | ACNGT | 1 cut(s) | 118 |
| HpyCH4V | TGCA | 1 cut(s) | 211 |
| Hsp92II | CATG | 2 cut(s) | 89, 189 |
| Kzo9I | GATC | 2 cut(s) | 28, 154 |
| LmnI | GCTCC | 1 cut(s) | 152 |
| LpnPI | CCDG | 1 cut(s) | 17 |
| MaeIII | GTNAC | 1 cut(s) | 188 |
| MalI | GATC | 2 cut(s) | 30, 156 |
| MboI | GATC | 2 cut(s) | 28, 154 |
| MboII | GAAGA | 1 cut(s) | 190 |
| MflI | RGATCY | 2 cut(s) | 28, 154 |
| MluCI | AATT | 1 cut(s) | 142 |
| MmeI | TCCRAC | 1 cut(s) | 182 |
| MnlI | CCTC | 1 cut(s) | 43 |
| MseI | TTAA | 2 cut(s) | 14, 137 |
| NdeII | GATC | 2 cut(s) | 28, 154 |
| NlaIII | CATG | 2 cut(s) | 89, 189 |
| PfeI | GAWTC | 2 cut(s) | 60, 82 |
| PsuI | RGATCY | 2 cut(s) | 28, 154 |
| RsaI | GTAC | 1 cut(s) | 123 |
| RsaNI | GTAC | 1 cut(s) | 122 |
| SaqAI | TTAA | 2 cut(s) | 14, 137 |
| Sau3AI | GATC | 2 cut(s) | 28, 154 |
| SgeI | CNNG | 5 cut(s) | 38, 44, 77, 98, 198 |
| Sse9I | AATT | 1 cut(s) | 142 |
| TaaI | ACNGT | 1 cut(s) | 118 |
| TasI | AATT | 1 cut(s) | 142 |
| TatI | WGTACW | 1 cut(s) | 121 |
| TfiI | GAWTC | 2 cut(s) | 60, 82 |
| Tru1I | TTAA | 2 cut(s) | 14, 137 |
| Tru9I | TTAA | 2 cut(s) | 14, 137 |