Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004273

Physical Location & Seq

Genomic Coordinates Forward (+)

30723184 .. 30723381

Gene Structure 198 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ49129

Sequence Viewer

CDS Protein Promoter (2k)

Length: 198 bp

ATGGCGATACATTTATACAAAACTTCTACCCCGAGCACACGCAATGGAGCCGTAGACAGTAAAGTGAAATCCAATCCACGAAATAATTTGATCTATGGACAGCATCGTTGTAGTAAAGGTCGTAATGCCAGAGGAATCATTACTGCAGGGCATAGAGGGGGAGGTCATAAGCGTCTATACCGTAAAATCGATTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L2

Protein Analysis

65

Amino Acids

7.26

Weight (kDa)

11.33

Isoelectric Point (pI)

16.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L2_N	PF00181	28 - 65	6.9e-10	Ribosomal Proteins L2, RNA binding N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004273)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG00820
fragaria_vesca	FvH4_6g09000
malus_domestica	MD15G1364200.v1.1
prunus_persica	Prupe.4G266600_v2.0.a1
pyrus_communis	pycom16g20490 pycom16g20550
rosa_chinensis	RchiOBHm_Chr1g0329571 RchiOBHm_Chr2g0102151 RchiOBHm_Chr2g0118431 RchiOBHm_Chr2g0118441 RchiOBHm_Chr2g0118451 RchiOBHm_Chr2g0118501 RchiOBHm_Chr2g0118531 RchiOBHm_CPg0501801 RchiOBHm_CPg0501831 RchiOBHm_CPg0502611
rosa_laevigata	RLG00000000006 RLG00000000213 RLG00000000240 RLG00000000256 RLG00000002780
rosa_samantha	Rh1AG125000 Rh1BG209500 Rh1CG032300 Rh1DG236100 Rh1DG236200 Rh1DG236300 Rh2CG158500 Rh2DG300400 Rh2DG300500 Rh3BG145300
rosa_wichuraiana	Rw3G020690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	54
Alw21I	GWGCWC	1 cut(s)	38
Ama87I	CYCGRG	1 cut(s)	31
AvaI	CYCGRG	1 cut(s)	31
Bbv12I	GWGCWC	1 cut(s)	38
BceAI	ACGGC	1 cut(s)	35
BfmI	CTRYAG	1 cut(s)	144
BmeT110I	CYCGRG	1 cut(s)	31
BmiI	GGNNCC	1 cut(s)	49
BmsI	GCATC	1 cut(s)	112
Bsa29I	ATCGAT	1 cut(s)	189
Bse3DI	GCAATG	1 cut(s)	49
BseCI	ATCGAT	1 cut(s)	189
BseMI	GCAATG	1 cut(s)	49
BshVI	ATCGAT	1 cut(s)	189
BsiHKAI	GWGCWC	1 cut(s)	38
BsiHKCI	CYCGRG	1 cut(s)	31
BsoBI	CYCGRG	1 cut(s)	31
Bsp1286I	GDGCHC	1 cut(s)	38
Bsp143I	GATC	1 cut(s)	90
BspDI	ATCGAT	1 cut(s)	189
BspLI	GGNNCC	1 cut(s)	49
BspMAI	CTGCAG	1 cut(s)	148
BsrDI	GCAATG	1 cut(s)	49
BssMI	GATC	1 cut(s)	90
Bst4CI	ACNGT	2 cut(s)	59, 182
BstKTI	GATC	1 cut(s)	93
BstMBI	GATC	1 cut(s)	90
BstSFI	CTRYAG	1 cut(s)	144
Bsu15I	ATCGAT	1 cut(s)	189
BsuTUI	ATCGAT	1 cut(s)	189
ClaI	ATCGAT	1 cut(s)	189
CseI	GACGC	1 cut(s)	161
CviJI	RGCY	1 cut(s)	50
CviKI_1	RGCY	1 cut(s)	50
DpnI	GATC	1 cut(s)	92
DpnII	GATC	1 cut(s)	90
Eco88I	CYCGRG	1 cut(s)	31
FaiI	YATR	5 cut(s)	16, 96, 153, 168, 178
FblI	GTMKAC	1 cut(s)	54
HgaI	GACGC	1 cut(s)	161
HinfI	GANTC	1 cut(s)	135
Hpy166II	GTNNAC	1 cut(s)	55
Hpy8I	GTNNAC	1 cut(s)	55
HpyCH4III	ACNGT	2 cut(s)	59, 182
HpyCH4V	TGCA	1 cut(s)	146
Kzo9I	GATC	1 cut(s)	90
LmnI	GCTCC	1 cut(s)	47
LpnPI	CCDG	2 cut(s)	132, 142
LweI	GCATC	1 cut(s)	112
MalI	GATC	1 cut(s)	92
MboI	GATC	1 cut(s)	90
MhlI	GDGCHC	1 cut(s)	38
MluCI	AATT	1 cut(s)	85
MnlI	CCTC	3 cut(s)	125, 149, 155
NdeII	GATC	1 cut(s)	90
NlaIV	GGNNCC	1 cut(s)	49
PfeI	GAWTC	1 cut(s)	135
PspN4I	GGNNCC	1 cut(s)	49
PstI	CTGCAG	1 cut(s)	148
Sau3AI	GATC	1 cut(s)	90
SduI	GDGCHC	1 cut(s)	38
SetI	ASST	2 cut(s)	121, 166
SfaNI	GCATC	1 cut(s)	112
SfcI	CTRYAG	1 cut(s)	144
SgeI	CNNG	6 cut(s)	43, 45, 51, 90, 141, 159
Sse9I	AATT	1 cut(s)	85
TaaI	ACNGT	2 cut(s)	59, 182
TaqI	TCGA	1 cut(s)	189
TasI	AATT	1 cut(s)	85
TfiI	GAWTC	1 cut(s)	135
XmiI	GTMKAC	1 cut(s)	54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.