Rh1AG125000

function. Its presence in a non-photosynthetic plant (Epifagus virginiana) and experiments in tobacco indicate that it has an essential function which is probably not related to photosynthesis

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0004273
Physical Location & Seq
Reverse (-)
23252747 .. 23274163
21417 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG125000.1

Sequence Viewer

Length: 903 bp
ATGGTTCCAAAGGATGAACTGGACAGTTCCAATAAGATTTCATTCTTGAACAAAAATCTATTTTGTGATTTATTTCATCTATTCCATGACCGGAACAGGGGGGGATACACGTTACACCACGATTTTGAATCAGAAGAGAGATTTCAAGAAATGGCAGATCTATTCACTCTATCAATAACCGAGCCGGATCCGTTATATCATAAGGGATTTGCCTTTTCTATTGATTCCTATGGATTGGATCAAAAACAATTCTTGAATGAGGTATTCAACTCCAGGGATGAATCGAAAAAGAAATCTTTATTGGTTCTACCTCCTATTTTTTATGAAGAGAATGAATCTTTTTATCGAAGGATCAGAAAAAAATGGGTCCGGACCTCCTGCGGGAATGATTTGGAAGATCCAAAACCAAAAATAGTGGTATTTGCTAGCAACAACATAATGGAGGCAGTCAATCAATATAGATTGATCCGAAATCTGATTCAAATCCAATATAGCACCTATGGGTACATAAGAAATGTATTGAATCGATTCTTTTTAATGAATAGATCCGATTGCAACTTCAAATATGGAATTCAAAGGGATCAAATAGAAAATGATACTCTGAATCATAGAACTATAATGAAATATACGATCAACCAACATTTATCAAATTTGAAAAAGAGTCAGAAGAAATGGTTCGATCCTCTTATTTTTATTTCTCGAACCGAGAGATCCATGAATCGGGATCCTAATGCATATAGATACAAATGGTCCAATGGGAGCAAGAAGTTACAGGAACATTTGGAACATTTCATTTCTGAGCAGAAGAGCCATTTTCATTTTCAAGTAGTCGATCGATTACGTATTAATCAATATTCGATTGATTGGTCTGAGTCACCAACTGCAACTACCACTATTGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA DUF825

Protein Analysis

300

Amino Acids

35.96

Weight (kDa)

8.9

Isoelectric Point (pI)

33.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ycf2 PF05695 1 - 291 8.8e-188 Ycf2 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 369
AciI CCGC 1 cut(s) 381
AcsI RAATTY 2 cut(s) 570, 649
AfaI GTAC 1 cut(s) 506
AfiI CCNNNNNNNGG 3 cut(s) 97, 381, 720
AflIII ACRYGT 1 cut(s) 108
AjnI CCWGG 1 cut(s) 272
AjuI GAANNNNNNNTTGG 2 cut(s) 284, 316
Aor13HI TCCGGA 1 cut(s) 369
ApoI RAATTY 2 cut(s) 570, 649
AseI ATTAAT 1 cut(s) 846
Asp700I GAANNNNTTC 2 cut(s) 527, 674
AspS9I GGNCC 3 cut(s) 367, 372, 750
AsuHPI GGTGA 1 cut(s) 867
AsuNHI GCTAGC 1 cut(s) 425
AvaII GGWCC 3 cut(s) 367, 372, 750
BamHI GGATCC 2 cut(s) 187, 724
BciT130I CCWGG 1 cut(s) 274
BciVI GTATCC 1 cut(s) 98
BfaI CTAG 1 cut(s) 426
BfuI GTATCC 1 cut(s) 98
BglII AGATCT 1 cut(s) 157
Bme1390I CCNGG 1 cut(s) 274
Bme18I GGWCC 3 cut(s) 367, 372, 750
BmgT120I GGNCC 3 cut(s) 367, 372, 750
BmiI GGNNCC 4 cut(s) 6, 189, 368, 726
BmrFI CCNGG 1 cut(s) 274
BmtI GCTAGC 1 cut(s) 429
BpmI CTGGAG 1 cut(s) 256
Bsa29I ATCGAT 2 cut(s) 526, 835
BsaAI YACGTR 1 cut(s) 842
BsaBI GATNNNNATC 1 cut(s) 482
BsaJI CCNNGG 1 cut(s) 273
BsaWI WCCGGW 2 cut(s) 90, 369
Bsc4I CCNNNNNNNGG 3 cut(s) 97, 381, 720
Bse1I ACTGG 1 cut(s) 24
Bse8I GATNNNNATC 1 cut(s) 482
BseAI TCCGGA 1 cut(s) 369
BseBI CCWGG 1 cut(s) 274
BseCI ATCGAT 2 cut(s) 526, 835
BseDI CCNNGG 1 cut(s) 273
BseGI GGATG 2 cut(s) 19, 283
BseJI GATNNNNATC 1 cut(s) 482
BseLI CCNNNNNNNGG 3 cut(s) 97, 381, 720
BseMII CTCAG 2 cut(s) 789, 861
BseNI ACTGG 1 cut(s) 24
Bsh1285I CGRYCG 1 cut(s) 835
BshVI ATCGAT 2 cut(s) 526, 835
BsiEI CGRYCG 1 cut(s) 835
BsiSI CCGG 3 cut(s) 91, 185, 370
BslI CCNNNNNNNGG 3 cut(s) 97, 381, 720
Bsp13I TCCGGA 1 cut(s) 369
BspACI CCGC 1 cut(s) 381
BspCNI CTCAG 2 cut(s) 790, 862
BspDI ATCGAT 2 cut(s) 526, 835
BspEI TCCGGA 1 cut(s) 369
BspLI GGNNCC 4 cut(s) 6, 189, 368, 726
BspOI GCTAGC 1 cut(s) 429
BspQI GCTCTTC 1 cut(s) 800
BsrI ACTGG 1 cut(s) 24
BssECI CCNNGG 1 cut(s) 273
Bst2UI CCWGG 1 cut(s) 274
Bst4CI ACNGT 1 cut(s) 26
Bst6I CTCTTC 3 cut(s) 129, 321, 800
BstBAI YACGTR 1 cut(s) 842
BstC8I GCNNGC 1 cut(s) 427
BstDEI CTNAG 2 cut(s) 798, 870
BstF5I GGATG 2 cut(s) 19, 283
BstMCI CGRYCG 1 cut(s) 835
BstNI CCWGG 1 cut(s) 274
BstSCI CCNGG 1 cut(s) 272
BstSNI TACGTA 1 cut(s) 842
BstX2I RGATCY 6 cut(s) 157, 187, 397, 545, 710, 724
BstYI RGATCY 6 cut(s) 157, 187, 397, 545, 710, 724
Bsu15I ATCGAT 2 cut(s) 526, 835
BsuI GTATCC 1 cut(s) 98
BsuTUI ATCGAT 2 cut(s) 526, 835
BtsCI GGATG 2 cut(s) 19, 283
Cac8I GCNNGC 1 cut(s) 427
Cfr13I GGNCC 3 cut(s) 367, 372, 750
ClaI ATCGAT 2 cut(s) 526, 835
Csp6I GTAC 1 cut(s) 505
CspCI CAANNNNNGTGG 2 cut(s) 396, 431
CviAII CATG 2 cut(s) 86, 715
CviJI RGCY 3 cut(s) 184, 810, 900
CviKI_1 RGCY 3 cut(s) 184, 810, 900
CviQI GTAC 1 cut(s) 505
DdeI CTNAG 2 cut(s) 798, 870
Eam1104I CTCTTC 3 cut(s) 129, 321, 800
EarI CTCTTC 3 cut(s) 129, 321, 800
Eco105I TACGTA 1 cut(s) 842
Eco47I GGWCC 3 cut(s) 367, 372, 750
EcoRI GAATTC 1 cut(s) 570
EcoRII CCWGG 1 cut(s) 272
EcoT22I ATGCAT 1 cut(s) 736
FaeI CATG 2 cut(s) 89, 718
FatI CATG 2 cut(s) 85, 714
FauI CCCGC 1 cut(s) 374
FokI GGATG 2 cut(s) 26, 290
FspBI CTAG 1 cut(s) 426
GsuI CTGGAG 1 cut(s) 256
HapII CCGG 3 cut(s) 91, 185, 370
Hin1II CATG 2 cut(s) 89, 718
HpaII CCGG 3 cut(s) 91, 185, 370
HphI GGTGA 1 cut(s) 867
Hpy188I TCNGA 9 cut(s) 133, 356, 470, 477, 550, 603, 666, 799, 871
Hpy188III TCNNGA 6 cut(s) 46, 146, 253, 370, 699, 722
HpyAV CCTTC 1 cut(s) 342
HpyCH4III ACNGT 1 cut(s) 26
HpyCH4IV ACGT 2 cut(s) 110, 841
HpyCH4V TGCA 3 cut(s) 555, 734, 884
HpyF3I CTNAG 2 cut(s) 798, 870
HpySE526I ACGT 2 cut(s) 110, 841
Hsp92II CATG 2 cut(s) 89, 718
Kpn2I TCCGGA 1 cut(s) 369
LguI GCTCTTC 1 cut(s) 800
LmnI GCTCC 1 cut(s) 759
LpnPI CCDG 9 cut(s) 5, 82, 104, 198, 259, 286, 383, 391, 758
MaeI CTAG 1 cut(s) 426
MaeII ACGT 2 cut(s) 110, 841
MaeIII GTNAC 3 cut(s) 111, 768, 873
MboII GAAGA 5 cut(s) 146, 338, 407, 679, 817
MflI RGATCY 6 cut(s) 157, 187, 397, 545, 710, 724
MluCI AATT 3 cut(s) 248, 570, 649
MlyI GAGTC 2 cut(s) 670, 881
MnlI CCTC 5 cut(s) 253, 321, 385, 436, 693
Mph1103I ATGCAT 1 cut(s) 736
MroI TCCGGA 1 cut(s) 369
MroXI GAANNNNTTC 2 cut(s) 527, 674
MseI TTAA 2 cut(s) 536, 846
MspI CCGG 3 cut(s) 91, 185, 370
MspR9I CCNGG 1 cut(s) 274
MvaI CCWGG 1 cut(s) 274
NheI GCTAGC 1 cut(s) 425
NlaIII CATG 2 cut(s) 89, 718
NlaIV GGNNCC 4 cut(s) 6, 189, 368, 726
NmuCI GTSAC 1 cut(s) 873
NsiI ATGCAT 1 cut(s) 736
PciSI GCTCTTC 1 cut(s) 800
PdmI GAANNNNTTC 2 cut(s) 527, 674
PfeI GAWTC 9 cut(s) 128, 224, 281, 335, 478, 523, 528, 604, 718
Ple19I CGATCG 1 cut(s) 835
PleI GAGTC 2 cut(s) 669, 880
PpsI GAGTC 2 cut(s) 669, 880
Ppu21I YACGTR 1 cut(s) 842
PshBI ATTAAT 1 cut(s) 846
Psp6I CCWGG 1 cut(s) 272
PspGI CCWGG 1 cut(s) 272
PspN4I GGNNCC 4 cut(s) 6, 189, 368, 726
PspPI GGNCC 3 cut(s) 367, 372, 750
PsuI RGATCY 6 cut(s) 157, 187, 397, 545, 710, 724
PvuI CGATCG 1 cut(s) 835
RsaI GTAC 1 cut(s) 506
RsaNI GTAC 1 cut(s) 505
SapI GCTCTTC 1 cut(s) 800
SaqAI TTAA 2 cut(s) 536, 846
Sau96I GGNCC 3 cut(s) 367, 372, 750
SchI GAGTC 2 cut(s) 670, 881
ScrFI CCNGG 1 cut(s) 274
SetI ASST 6 cut(s) 113, 264, 313, 377, 500, 844
SinI GGWCC 3 cut(s) 367, 372, 750
SnaBI TACGTA 1 cut(s) 842
Sse9I AATT 3 cut(s) 248, 570, 649
SsiI CCGC 1 cut(s) 381
SspI AATATT 1 cut(s) 854
SspMI CTAG 1 cut(s) 426
StyD4I CCNGG 1 cut(s) 272
TaaI ACNGT 1 cut(s) 26
TaiI ACGT 2 cut(s) 113, 844
TaqI TCGA 8 cut(s) 284, 346, 526, 678, 700, 831, 835, 857
TasI AATT 3 cut(s) 248, 570, 649
TfiI GAWTC 9 cut(s) 128, 224, 281, 335, 478, 523, 528, 604, 718
Tru1I TTAA 2 cut(s) 536, 846
Tru9I TTAA 2 cut(s) 536, 846
TseFI GTSAC 1 cut(s) 873
Tsp45I GTSAC 1 cut(s) 873
TspGWI ACGGA 1 cut(s) 180
VpaK11BI GGWCC 3 cut(s) 367, 372, 750
VspI ATTAAT 1 cut(s) 846
XapI RAATTY 2 cut(s) 570, 649
XmnI GAANNNNTTC 2 cut(s) 527, 674
XspI CTAG 1 cut(s) 426
Zsp2I ATGCAT 1 cut(s) 736
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.