function. Its presence in a non-photosynthetic plant (Epifagus virginiana) and experiments in tobacco indicate that it has an essential function which is probably not related to photosynthesis
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | ATCG00820 |
| fragaria_vesca | FvH4_6g09000 |
| malus_domestica | MD15G1364200.v1.1 |
| prunus_persica | Prupe.4G266600_v2.0.a1 |
| pyrus_communis | pycom16g20490 pycom16g20550 |
| rosa_chinensis | RchiOBHm_Chr1g0329571 RchiOBHm_Chr2g0102151 RchiOBHm_Chr2g0118431 RchiOBHm_Chr2g0118441 RchiOBHm_Chr2g0118451 RchiOBHm_Chr2g0118501 RchiOBHm_Chr2g0118531 RchiOBHm_CPg0501801 RchiOBHm_CPg0501831 RchiOBHm_CPg0502611 |
| rosa_laevigata | RLG00000000006 RLG00000000213 RLG00000000240 RLG00000000256 RLG00000002780 |
| rosa_samantha | Rh1AG125000 Rh1BG209500 Rh1CG032300 Rh1DG236100 Rh1DG236200 Rh1DG236300 Rh2CG158500 Rh2DG300400 Rh2DG300500 Rh3BG145300 |
| rosa_wichuraiana | Rw3G020690 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 465 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 878 |
| AccBSI | CCGCTC | 1 cut(s) | 1364 |
| AciI | CCGC | 5 cut(s) | 87, 97, 333, 799, 1362 |
| AclWI | GGATC | 3 cut(s) | 951, 1352, 1365 |
| AcoI | YGGCCR | 1 cut(s) | 1075 |
| AcsI | RAATTY | 4 cut(s) | 220, 590, 639, 1155 |
| AfaI | GTAC | 2 cut(s) | 478, 1530 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 338, 339, 849, 878, 918, 919, 1090 |
| AgsI | TTSAA | 6 cut(s) | 107, 140, 376, 704, 775, 1172 |
| AjnI | CCWGG | 1 cut(s) | 1286 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1268, 1300 |
| AluBI | AGCT | 4 cut(s) | 51, 1096, 1102, 1373 |
| AluI | AGCT | 4 cut(s) | 51, 1096, 1102, 1373 |
| Alw26I | GTCTC | 4 cut(s) | 451, 559, 1200, 1550 |
| AlwI | GGATC | 3 cut(s) | 951, 1352, 1365 |
| AoxI | GGCC | 2 cut(s) | 82, 1075 |
| ApaI | GGGCCC | 1 cut(s) | 86 |
| ApoI | RAATTY | 4 cut(s) | 220, 590, 639, 1155 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1178, 1210 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 224, 1022, 1484 |
| AspLEI | GCGC | 1 cut(s) | 1123 |
| AspS9I | GGNCC | 4 cut(s) | 82, 83, 329, 1506 |
| AsuC2I | CCSGG | 1 cut(s) | 711 |
| AsuHPI | GGTGA | 4 cut(s) | 13, 533, 587, 1156 |
| AsuII | TTCGAA | 2 cut(s) | 62, 1176 |
| AsuNHI | GCTAGC | 1 cut(s) | 47 |
| AvaII | GGWCC | 2 cut(s) | 329, 1506 |
| BaeGI | GKGCMC | 1 cut(s) | 86 |
| BamHI | GGATCC | 1 cut(s) | 1357 |
| BanII | GRGCYC | 1 cut(s) | 86 |
| BccI | CCATC | 4 cut(s) | 172, 217, 434, 880 |
| BceAI | ACGGC | 1 cut(s) | 1062 |
| BciT130I | CCWGG | 1 cut(s) | 1288 |
| BciVI | GTATCC | 1 cut(s) | 213 |
| BclI | TGATCA | 2 cut(s) | 634, 664 |
| BcnI | CCSGG | 1 cut(s) | 711 |
| BcoDI | GTCTC | 4 cut(s) | 451, 559, 1200, 1550 |
| BfaI | CTAG | 8 cut(s) | 48, 248, 278, 687, 918, 977, 1311, 1458 |
| BfmI | CTRYAG | 1 cut(s) | 942 |
| BfuI | GTATCC | 1 cut(s) | 213 |
| BglII | AGATCT | 2 cut(s) | 483, 1534 |
| Bme1390I | CCNGG | 2 cut(s) | 711, 1288 |
| Bme18I | GGWCC | 2 cut(s) | 329, 1506 |
| BmgT120I | GGNCC | 4 cut(s) | 82, 83, 329, 1506 |
| BmiI | GGNNCC | 7 cut(s) | 84, 85, 295, 331, 1359, 1507, 1522 |
| BmrFI | CCNGG | 2 cut(s) | 711, 1288 |
| BmtI | GCTAGC | 1 cut(s) | 51 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 640, 672 |
| BpmI | CTGGAG | 1 cut(s) | 1118 |
| Bpu14I | TTCGAA | 2 cut(s) | 62, 1176 |
| BpuMI | CCSGG | 1 cut(s) | 711 |
| Bsa29I | ATCGAT | 3 cut(s) | 390, 399, 1565 |
| BsaBI | GATNNNNATC | 1 cut(s) | 201 |
| BsaI | GGTCTC | 2 cut(s) | 559, 1550 |
| BsaJI | CCNNGG | 4 cut(s) | 1041, 1261, 1287, 1515 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 338, 339, 849, 878, 918, 919, 1090 |
| Bse1I | ACTGG | 1 cut(s) | 955 |
| Bse3DI | GCAATG | 1 cut(s) | 1197 |
| Bse8I | GATNNNNATC | 1 cut(s) | 201 |
| BseBI | CCWGG | 1 cut(s) | 1288 |
| BseCI | ATCGAT | 3 cut(s) | 390, 399, 1565 |
| BseDI | CCNNGG | 4 cut(s) | 1041, 1261, 1287, 1515 |
| BseGI | GGATG | 2 cut(s) | 779, 1240 |
| BseJI | GATNNNNATC | 1 cut(s) | 201 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 338, 339, 849, 878, 918, 919, 1090 |
| BseMI | GCAATG | 1 cut(s) | 1197 |
| BseNI | ACTGG | 1 cut(s) | 955 |
| BseSI | GKGCMC | 1 cut(s) | 86 |
| BseX3I | CGGCCG | 1 cut(s) | 1075 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1078 |
| BshFI | GGCC | 2 cut(s) | 84, 1077 |
| BshVI | ATCGAT | 3 cut(s) | 390, 399, 1565 |
| BsiEI | CGRYCG | 1 cut(s) | 1078 |
| BsiSI | CCGG | 1 cut(s) | 710 |
| BslFI | GGGAC | 1 cut(s) | 315 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 338, 339, 849, 878, 918, 919, 1090 |
| BsmAI | GTCTC | 4 cut(s) | 451, 559, 1200, 1550 |
| BsmFI | GGGAC | 1 cut(s) | 315 |
| BsmI | GAATGC | 1 cut(s) | 1123 |
| BsnI | GGCC | 2 cut(s) | 84, 1077 |
| Bso31I | GGTCTC | 2 cut(s) | 559, 1550 |
| Bsp119I | TTCGAA | 2 cut(s) | 62, 1176 |
| Bsp120I | GGGCCC | 1 cut(s) | 82 |
| Bsp1286I | GDGCHC | 1 cut(s) | 86 |
| Bsp143I | GATC | 7 cut(s) | 483, 634, 664, 956, 1228, 1357, 1534 |
| Bsp19I | CCATGG | 1 cut(s) | 1515 |
| BspACI | CCGC | 5 cut(s) | 87, 97, 333, 799, 1362 |
| BspANI | GGCC | 2 cut(s) | 84, 1077 |
| BspDI | ATCGAT | 3 cut(s) | 390, 399, 1565 |
| BspHI | TCATGA | 1 cut(s) | 1225 |
| BspLI | GGNNCC | 7 cut(s) | 84, 85, 295, 331, 1359, 1507, 1522 |
| BspOI | GCTAGC | 1 cut(s) | 51 |
| BspPI | GGATC | 3 cut(s) | 951, 1352, 1365 |
| BspT104I | TTCGAA | 2 cut(s) | 62, 1176 |
| BspTNI | GGTCTC | 2 cut(s) | 559, 1550 |
| BsrBI | CCGCTC | 1 cut(s) | 1364 |
| BsrDI | GCAATG | 1 cut(s) | 1197 |
| BsrI | ACTGG | 1 cut(s) | 955 |
| BssECI | CCNNGG | 4 cut(s) | 1041, 1261, 1287, 1515 |
| BssMI | GATC | 7 cut(s) | 483, 634, 664, 956, 1228, 1357, 1534 |
| BssT1I | CCWWGG | 2 cut(s) | 1041, 1515 |
| Bst2UI | CCWGG | 1 cut(s) | 1288 |
| Bst4CI | ACNGT | 3 cut(s) | 521, 563, 1009 |
| BstBI | TTCGAA | 2 cut(s) | 62, 1176 |
| BstC8I | GCNNGC | 1 cut(s) | 49 |
| BstDEI | CTNAG | 4 cut(s) | 360, 464, 733, 1027 |
| BstDSI | CCRYGG | 1 cut(s) | 1515 |
| BstF5I | GGATG | 2 cut(s) | 779, 1240 |
| BstHHI | GCGC | 1 cut(s) | 1123 |
| BstKTI | GATC | 7 cut(s) | 486, 637, 667, 959, 1231, 1360, 1537 |
| BstMAI | GTCTC | 4 cut(s) | 451, 559, 1200, 1550 |
| BstMBI | GATC | 7 cut(s) | 483, 634, 664, 956, 1228, 1357, 1534 |
| BstMCI | CGRYCG | 1 cut(s) | 1078 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 1370 |
| BstNI | CCWGG | 1 cut(s) | 1288 |
| BstNSI | RCATGY | 1 cut(s) | 316 |
| BstSCI | CCNGG | 2 cut(s) | 709, 1286 |
| BstSFI | CTRYAG | 1 cut(s) | 942 |
| BstSLI | GKGCMC | 1 cut(s) | 86 |
| BstX2I | RGATCY | 3 cut(s) | 483, 1357, 1534 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1354, 1516 |
| BstYI | RGATCY | 3 cut(s) | 483, 1357, 1534 |
| BstZI | CGGCCG | 1 cut(s) | 1075 |
| Bsu15I | ATCGAT | 3 cut(s) | 390, 399, 1565 |
| BsuI | GTATCC | 1 cut(s) | 213 |
| BsuRI | GGCC | 2 cut(s) | 84, 1077 |
| BsuTUI | ATCGAT | 3 cut(s) | 390, 399, 1565 |
| BtgI | CCRYGG | 1 cut(s) | 1515 |
| BtsCI | GGATG | 2 cut(s) | 779, 1240 |
| BtsIMutI | CAGTG | 1 cut(s) | 568 |
| Cac8I | GCNNGC | 1 cut(s) | 49 |
| CciI | TCATGA | 1 cut(s) | 1225 |
| CfoI | GCGC | 1 cut(s) | 1123 |
| Cfr13I | GGNCC | 4 cut(s) | 82, 83, 329, 1506 |
| ClaI | ATCGAT | 3 cut(s) | 390, 399, 1565 |
| Csp6I | GTAC | 2 cut(s) | 477, 1529 |
| CviAII | CATG | 5 cut(s) | 172, 313, 878, 1226, 1516 |
| CviQI | GTAC | 2 cut(s) | 477, 1529 |
| DdeI | CTNAG | 4 cut(s) | 360, 464, 733, 1027 |
| DpnI | GATC | 7 cut(s) | 485, 636, 666, 958, 1230, 1359, 1536 |
| DpnII | GATC | 7 cut(s) | 483, 634, 664, 956, 1228, 1357, 1534 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 465 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 465 |
| EaeI | YGGCCR | 1 cut(s) | 1075 |
| EagI | CGGCCG | 1 cut(s) | 1075 |
| EciI | GGCGGA | 1 cut(s) | 814 |
| EclXI | CGGCCG | 1 cut(s) | 1075 |
| Eco130I | CCWWGG | 2 cut(s) | 1041, 1515 |
| Eco24I | GRGCYC | 1 cut(s) | 86 |
| Eco31I | GGTCTC | 2 cut(s) | 559, 1550 |
| Eco32I | GATATC | 2 cut(s) | 394, 1072 |
| Eco47I | GGWCC | 2 cut(s) | 329, 1506 |
| Eco52I | CGGCCG | 1 cut(s) | 1075 |
| EcoO109I | RGGNCCY | 1 cut(s) | 83 |
| EcoRI | GAATTC | 2 cut(s) | 220, 590 |
| EcoRII | CCWGG | 1 cut(s) | 1286 |
| EcoRV | GATATC | 2 cut(s) | 394, 1072 |
| EcoT14I | CCWWGG | 2 cut(s) | 1041, 1515 |
| EcoT22I | ATGCAT | 1 cut(s) | 1397 |
| EcoT38I | GRGCYC | 1 cut(s) | 86 |
| ErhI | CCWWGG | 2 cut(s) | 1041, 1515 |
| FaeI | CATG | 5 cut(s) | 175, 316, 881, 1229, 1519 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 227, 259 |
| FaqI | GGGAC | 1 cut(s) | 315 |
| FatI | CATG | 5 cut(s) | 171, 312, 877, 1225, 1515 |
| FauI | CCCGC | 3 cut(s) | 94, 340, 1369 |
| FbaI | TGATCA | 2 cut(s) | 634, 664 |
| FokI | GGATG | 2 cut(s) | 766, 1247 |
| FriOI | GRGCYC | 1 cut(s) | 86 |
| FspBI | CTAG | 8 cut(s) | 48, 248, 278, 687, 918, 977, 1311, 1458 |
| GlaI | GCGC | 1 cut(s) | 1122 |
| GsuI | CTGGAG | 1 cut(s) | 1118 |
| HaeIII | GGCC | 2 cut(s) | 84, 1077 |
| HapII | CCGG | 1 cut(s) | 710 |
| HhaI | GCGC | 1 cut(s) | 1123 |
| Hin1II | CATG | 5 cut(s) | 175, 316, 881, 1229, 1519 |
| Hin6I | GCGC | 1 cut(s) | 1121 |
| HinP1I | GCGC | 1 cut(s) | 1121 |
| HincII | GTYRAC | 1 cut(s) | 739 |
| HindII | GTYRAC | 1 cut(s) | 739 |
| HpaII | CCGG | 1 cut(s) | 710 |
| HphI | GGTGA | 4 cut(s) | 13, 533, 587, 1156 |
| Hpy166II | GTNNAC | 3 cut(s) | 517, 739, 1276 |
| Hpy188I | TCNGA | 4 cut(s) | 214, 822, 1017, 1377 |
| Hpy188III | TCNNGA | 5 cut(s) | 194, 278, 556, 1226, 1232 |
| Hpy8I | GTNNAC | 3 cut(s) | 517, 739, 1276 |
| Hpy99I | CGWCG | 1 cut(s) | 43 |
| HpyAV | CCTTC | 2 cut(s) | 1178, 1401 |
| HpyCH4III | ACNGT | 3 cut(s) | 521, 563, 1009 |
| HpyCH4IV | ACGT | 4 cut(s) | 18, 102, 355, 513 |
| HpyCH4V | TGCA | 2 cut(s) | 1203, 1395 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 1370 |
| HpyF3I | CTNAG | 4 cut(s) | 360, 464, 733, 1027 |
| HpySE526I | ACGT | 4 cut(s) | 18, 102, 355, 513 |
| Hsp92II | CATG | 5 cut(s) | 175, 316, 881, 1229, 1519 |
| HspAI | GCGC | 1 cut(s) | 1121 |
| Ksp22I | TGATCA | 2 cut(s) | 634, 664 |
| Kzo9I | GATC | 7 cut(s) | 483, 634, 664, 956, 1228, 1357, 1534 |
| LmnI | GCTCC | 5 cut(s) | 56, 713, 1093, 1099, 1378 |
| MaeI | CTAG | 8 cut(s) | 48, 248, 278, 687, 918, 977, 1311, 1458 |
| MaeII | ACGT | 4 cut(s) | 18, 102, 355, 513 |
| MaeIII | GTNAC | 3 cut(s) | 19, 123, 1079 |
| MalI | GATC | 7 cut(s) | 485, 636, 666, 958, 1230, 1359, 1536 |
| MbiI | CCGCTC | 1 cut(s) | 1364 |
| MboI | GATC | 7 cut(s) | 483, 634, 664, 956, 1228, 1357, 1534 |
| MboII | GAAGA | 2 cut(s) | 293, 376 |
| MflI | RGATCY | 3 cut(s) | 483, 1357, 1534 |
| MhlI | GDGCHC | 1 cut(s) | 86 |
| MlyI | GAGTC | 4 cut(s) | 658, 677, 1253, 1330 |
| MmeI | TCCRAC | 1 cut(s) | 1122 |
| MnlI | CCTC | 4 cut(s) | 216, 853, 923, 1271 |
| Mph1103I | ATGCAT | 1 cut(s) | 1397 |
| MroXI | GAANNNNTTC | 3 cut(s) | 224, 1022, 1484 |
| MseI | TTAA | 4 cut(s) | 233, 614, 1385, 1398 |
| MslI | CAYNNNNRTG | 2 cut(s) | 26, 1514 |
| MspA1I | CMGCKG | 1 cut(s) | 89 |
| MspI | CCGG | 1 cut(s) | 710 |
| MspR9I | CCNGG | 2 cut(s) | 711, 1288 |
| Mva1269I | GAATGC | 1 cut(s) | 1123 |
| MvaI | CCWGG | 1 cut(s) | 1288 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 1370 |
| NciI | CCSGG | 1 cut(s) | 711 |
| NcoI | CCATGG | 1 cut(s) | 1515 |
| NdeII | GATC | 7 cut(s) | 483, 634, 664, 956, 1228, 1357, 1534 |
| NheI | GCTAGC | 1 cut(s) | 47 |
| NlaIII | CATG | 5 cut(s) | 175, 316, 881, 1229, 1519 |
| NlaIV | GGNNCC | 7 cut(s) | 84, 85, 295, 331, 1359, 1507, 1522 |
| NmuCI | GTSAC | 2 cut(s) | 19, 1079 |
| NsiI | ATGCAT | 1 cut(s) | 1397 |
| NspI | RCATGY | 1 cut(s) | 316 |
| NspV | TTCGAA | 2 cut(s) | 62, 1176 |
| PagI | TCATGA | 1 cut(s) | 1225 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 396, 554 |
| PctI | GAATGC | 1 cut(s) | 1123 |
| PdmI | GAANNNNTTC | 3 cut(s) | 224, 1022, 1484 |
| PfeI | GAWTC | 9 cut(s) | 59, 160, 238, 272, 435, 545, 566, 1213, 1500 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 878 |
| PleI | GAGTC | 4 cut(s) | 657, 677, 1252, 1330 |
| PpsI | GAGTC | 4 cut(s) | 657, 677, 1252, 1330 |
| Psp6I | CCWGG | 1 cut(s) | 1286 |
| PspGI | CCWGG | 1 cut(s) | 1286 |
| PspN4I | GGNNCC | 7 cut(s) | 84, 85, 295, 331, 1359, 1507, 1522 |
| PspOMI | GGGCCC | 1 cut(s) | 82 |
| PspPI | GGNCC | 4 cut(s) | 82, 83, 329, 1506 |
| PsuI | RGATCY | 3 cut(s) | 483, 1357, 1534 |
| RsaI | GTAC | 2 cut(s) | 478, 1530 |
| RsaNI | GTAC | 2 cut(s) | 477, 1529 |
| RseI | CAYNNNNRTG | 2 cut(s) | 26, 1514 |
| SaqAI | TTAA | 4 cut(s) | 233, 614, 1385, 1398 |
| Sau3AI | GATC | 7 cut(s) | 483, 634, 664, 956, 1228, 1357, 1534 |
| Sau96I | GGNCC | 4 cut(s) | 82, 83, 329, 1506 |
| SchI | GAGTC | 4 cut(s) | 658, 677, 1253, 1330 |
| ScrFI | CCNGG | 2 cut(s) | 711, 1288 |
| SduI | GDGCHC | 1 cut(s) | 86 |
| SfcI | CTRYAG | 1 cut(s) | 942 |
| SfuI | TTCGAA | 2 cut(s) | 62, 1176 |
| SinI | GGWCC | 2 cut(s) | 329, 1506 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 26, 1514 |
| SsiI | CCGC | 5 cut(s) | 87, 97, 333, 799, 1362 |
| SspI | AATATT | 2 cut(s) | 371, 1318 |
| SspMI | CTAG | 8 cut(s) | 48, 248, 278, 687, 918, 977, 1311, 1458 |
| StyD4I | CCNGG | 2 cut(s) | 709, 1286 |
| StyI | CCWWGG | 2 cut(s) | 1041, 1515 |
| TaaI | ACNGT | 3 cut(s) | 521, 563, 1009 |
| TaiI | ACGT | 4 cut(s) | 21, 105, 358, 516 |
| TaqII | GACCGA | 1 cut(s) | 1167 |
| TatI | WGTACW | 1 cut(s) | 476 |
| TfiI | GAWTC | 9 cut(s) | 59, 160, 238, 272, 435, 545, 566, 1213, 1500 |
| Tru1I | TTAA | 4 cut(s) | 233, 614, 1385, 1398 |
| Tru9I | TTAA | 4 cut(s) | 233, 614, 1385, 1398 |
| TscAI | CASTG | 1 cut(s) | 568 |
| TseFI | GTSAC | 2 cut(s) | 19, 1079 |
| Tsp45I | GTSAC | 2 cut(s) | 19, 1079 |
| TspGWI | ACGGA | 1 cut(s) | 1106 |
| TspRI | CASTG | 1 cut(s) | 568 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 878 |
| VpaK11BI | GGWCC | 2 cut(s) | 329, 1506 |
| XapI | RAATTY | 4 cut(s) | 220, 590, 639, 1155 |
| XbaI | TCTAGA | 1 cut(s) | 277 |
| XceI | RCATGY | 1 cut(s) | 316 |
| XmnI | GAANNNNTTC | 3 cut(s) | 224, 1022, 1484 |
| XspI | CTAG | 8 cut(s) | 48, 248, 278, 687, 918, 977, 1311, 1458 |
| Zsp2I | ATGCAT | 1 cut(s) | 1397 |