Rh3BG145300

function. Its presence in a non-photosynthetic plant (Epifagus virginiana) and experiments in tobacco indicate that it has an essential function which is probably not related to photosynthesis

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0004273
Physical Location & Seq
Forward (+)
12305891 .. 12306205
315 bp
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UTR
Exon/CDS
Intron
Rh3BG145300.1

Sequence Viewer

Length: 315 bp
ATGAATCGGGATCCTGATGCATATAGATACAAATGGTCCAATGGGAGCAAGAAGTTACAGGAACATTTGGAACATTTCATTTCTGAGCAGAAGAGCCATTTTCATTTTCAAGTAGTCGATCGATTACGTATTAATCAATATTCGATTGATTGGTCTGAGGTTATCGACAAAAAAGATTTGTCTAAGTCACTTCCTTTCTTTTTGTCCAAGTTACTTCTTTTTTTGTCCAAGTTTCTTCTCTTTTTGTCTAACTCACTTCCTTTTTTCCTTATGAGTTTCGGGAATATCCCCATGCATGTACTTTGGCTGCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA DUF825

Protein Analysis

104

Amino Acids

12.55

Weight (kDa)

9.3

Isoelectric Point (pI)

32.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ycf2 PF05695 1 - 99 9.2e-52 Ycf2 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 5, 18
AfaI GTAC 1 cut(s) 300
AgsI TTSAA 1 cut(s) 110
AlwI GGATC 2 cut(s) 5, 18
ApeKI GCWGC 1 cut(s) 307
AseI ATTAAT 1 cut(s) 132
AspS9I GGNCC 1 cut(s) 36
AvaII GGWCC 1 cut(s) 36
BamHI GGATCC 1 cut(s) 10
BbvI GCAGC 1 cut(s) 294
BisI GCNGC 1 cut(s) 308
BlsI GCNGC 1 cut(s) 309
Bme18I GGWCC 1 cut(s) 36
BmgT120I GGNCC 1 cut(s) 36
BmiI GGNNCC 1 cut(s) 12
BmsI GCATC 1 cut(s) 7
Bsa29I ATCGAT 1 cut(s) 121
BsaAI YACGTR 1 cut(s) 128
BseCI ATCGAT 1 cut(s) 121
BseMII CTCAG 2 cut(s) 75, 147
BseXI GCAGC 1 cut(s) 294
Bsh1285I CGRYCG 1 cut(s) 121
BshVI ATCGAT 1 cut(s) 121
BsiEI CGRYCG 1 cut(s) 121
Bsp143I GATC 2 cut(s) 10, 118
BspCNI CTCAG 2 cut(s) 76, 148
BspDI ATCGAT 1 cut(s) 121
BspLI GGNNCC 1 cut(s) 12
BspPI GGATC 2 cut(s) 5, 18
BspQI GCTCTTC 1 cut(s) 86
BssMI GATC 2 cut(s) 10, 118
Bst6I CTCTTC 1 cut(s) 86
BstBAI YACGTR 1 cut(s) 128
BstDEI CTNAG 3 cut(s) 84, 156, 183
BstKTI GATC 2 cut(s) 13, 121
BstMBI GATC 2 cut(s) 10, 118
BstMCI CGRYCG 1 cut(s) 121
BstNSI RCATGY 1 cut(s) 299
BstSNI TACGTA 1 cut(s) 128
BstV1I GCAGC 1 cut(s) 294
BstX2I RGATCY 1 cut(s) 10
BstYI RGATCY 1 cut(s) 10
Bsu15I ATCGAT 1 cut(s) 121
BsuTUI ATCGAT 1 cut(s) 121
Cfr13I GGNCC 1 cut(s) 36
ClaI ATCGAT 1 cut(s) 121
Csp6I GTAC 1 cut(s) 299
CviAII CATG 2 cut(s) 292, 296
CviJI RGCY 2 cut(s) 96, 307
CviKI_1 RGCY 2 cut(s) 96, 307
CviQI GTAC 1 cut(s) 299
DdeI CTNAG 3 cut(s) 84, 156, 183
DpnI GATC 2 cut(s) 12, 120
DpnII GATC 2 cut(s) 10, 118
Eam1104I CTCTTC 1 cut(s) 86
EarI CTCTTC 1 cut(s) 86
Eco105I TACGTA 1 cut(s) 128
Eco47I GGWCC 1 cut(s) 36
EcoT22I ATGCAT 2 cut(s) 22, 297
FaeI CATG 2 cut(s) 295, 299
FaiI YATR 5 cut(s) 22, 24, 272, 293, 297
FatI CATG 2 cut(s) 291, 295
Fnu4HI GCNGC 1 cut(s) 308
Fsp4HI GCNGC 1 cut(s) 308
GluI GCNGC 1 cut(s) 308
Hin1II CATG 2 cut(s) 295, 299
HinfI GANTC 1 cut(s) 4
Hpy188I TCNGA 2 cut(s) 85, 157
Hpy188III TCNNGA 3 cut(s) 8, 14, 280
HpyCH4IV ACGT 1 cut(s) 127
HpyCH4V TGCA 3 cut(s) 20, 295, 310
HpyF3I CTNAG 3 cut(s) 84, 156, 183
HpySE526I ACGT 1 cut(s) 127
Hsp92II CATG 2 cut(s) 295, 299
Kzo9I GATC 2 cut(s) 10, 118
LguI GCTCTTC 1 cut(s) 86
LmnI GCTCC 1 cut(s) 45
LpnPI CCDG 2 cut(s) 27, 44
Lsp1109I GCAGC 1 cut(s) 294
LweI GCATC 1 cut(s) 7
MaeII ACGT 1 cut(s) 127
MaeIII GTNAC 3 cut(s) 54, 186, 210
MalI GATC 2 cut(s) 12, 120
MboI GATC 2 cut(s) 10, 118
MboII GAAGA 2 cut(s) 103, 227
MflI RGATCY 1 cut(s) 10
MnlI CCTC 1 cut(s) 151
Mph1103I ATGCAT 2 cut(s) 22, 297
MseI TTAA 1 cut(s) 132
NdeII GATC 2 cut(s) 10, 118
NlaIII CATG 2 cut(s) 295, 299
NlaIV GGNNCC 1 cut(s) 12
NmuCI GTSAC 1 cut(s) 186
NsiI ATGCAT 2 cut(s) 22, 297
NspI RCATGY 1 cut(s) 299
PciSI GCTCTTC 1 cut(s) 86
PfeI GAWTC 1 cut(s) 4
PkrI GCNGC 1 cut(s) 309
Ple19I CGATCG 1 cut(s) 121
Ppu21I YACGTR 1 cut(s) 128
PshBI ATTAAT 1 cut(s) 132
PspN4I GGNNCC 1 cut(s) 12
PspPI GGNCC 1 cut(s) 36
PsuI RGATCY 1 cut(s) 10
PvuI CGATCG 1 cut(s) 121
RsaI GTAC 1 cut(s) 300
RsaNI GTAC 1 cut(s) 299
SapI GCTCTTC 1 cut(s) 86
SaqAI TTAA 1 cut(s) 132
SatI GCNGC 1 cut(s) 308
Sau3AI GATC 2 cut(s) 10, 118
Sau96I GGNCC 1 cut(s) 36
SetI ASST 2 cut(s) 130, 162
SfaNI GCATC 1 cut(s) 7
SinI GGWCC 1 cut(s) 36
SnaBI TACGTA 1 cut(s) 128
SspI AATATT 1 cut(s) 140
TaiI ACGT 1 cut(s) 130
TaqI TCGA 4 cut(s) 117, 121, 143, 165
TatI WGTACW 1 cut(s) 298
TfiI GAWTC 1 cut(s) 4
Tru1I TTAA 1 cut(s) 132
Tru9I TTAA 1 cut(s) 132
TseFI GTSAC 1 cut(s) 186
TseI GCWGC 1 cut(s) 307
Tsp45I GTSAC 1 cut(s) 186
TspDTI ATGAA 3 cut(s) 17, 67, 92
VpaK11BI GGWCC 1 cut(s) 36
VspI ATTAAT 1 cut(s) 132
XceI RCATGY 1 cut(s) 299
Zsp2I ATGCAT 2 cut(s) 22, 297
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.