function. Its presence in a non-photosynthetic plant (Epifagus virginiana) and experiments in tobacco indicate that it has an essential function which is probably not related to photosynthesis
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | ATCG00820 |
| fragaria_vesca | FvH4_6g09000 |
| malus_domestica | MD15G1364200.v1.1 |
| prunus_persica | Prupe.4G266600_v2.0.a1 |
| pyrus_communis | pycom16g20490 pycom16g20550 |
| rosa_chinensis | RchiOBHm_Chr1g0329571 RchiOBHm_Chr2g0102151 RchiOBHm_Chr2g0118431 RchiOBHm_Chr2g0118441 RchiOBHm_Chr2g0118451 RchiOBHm_Chr2g0118501 RchiOBHm_Chr2g0118531 RchiOBHm_CPg0501801 RchiOBHm_CPg0501831 RchiOBHm_CPg0502611 |
| rosa_laevigata | RLG00000000006 RLG00000000213 RLG00000000240 RLG00000000256 RLG00000002780 |
| rosa_samantha | Rh1AG125000 Rh1BG209500 Rh1CG032300 Rh1DG236100 Rh1DG236200 Rh1DG236300 Rh2CG158500 Rh2DG300400 Rh2DG300500 Rh3BG145300 |
| rosa_wichuraiana | Rw3G020690 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1497 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 586, 1910 |
| AccBSI | CCGCTC | 1 cut(s) | 2396 |
| AccII | CGCG | 1 cut(s) | 489 |
| AciI | CCGC | 5 cut(s) | 489, 655, 1365, 1831, 2394 |
| AclWI | GGATC | 6 cut(s) | 31, 884, 1137, 1983, 2384, 2397 |
| AcoI | YGGCCR | 2 cut(s) | 908, 2107 |
| AcsI | RAATTY | 7 cut(s) | 113, 802, 859, 1252, 1622, 1671, 2187 |
| AcuI | CTGAAG | 1 cut(s) | 902 |
| AfaI | GTAC | 3 cut(s) | 1120, 1510, 2562 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 835 |
| AjnI | CCWGG | 1 cut(s) | 2318 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 2300, 2332 |
| AluBI | AGCT | 4 cut(s) | 303, 2128, 2134, 2405 |
| AluI | AGCT | 4 cut(s) | 303, 2128, 2134, 2405 |
| Alw26I | GTCTC | 4 cut(s) | 1483, 1591, 2232, 2582 |
| AlwI | GGATC | 6 cut(s) | 31, 884, 1137, 1983, 2384, 2397 |
| AoxI | GGCC | 3 cut(s) | 408, 908, 2107 |
| ApeKI | GCWGC | 1 cut(s) | 852 |
| ApoI | RAATTY | 7 cut(s) | 113, 802, 859, 1252, 1622, 1671, 2187 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 583, 615, 2210, 2242 |
| Asp700I | GAANNNNTTC | 5 cut(s) | 749, 1005, 1256, 2054, 2516 |
| AspLEI | GCGC | 2 cut(s) | 489, 2155 |
| AspS9I | GGNCC | 6 cut(s) | 30, 59, 409, 771, 1361, 2538 |
| AsuC2I | CCSGG | 1 cut(s) | 1743 |
| AsuHPI | GGTGA | 8 cut(s) | 132, 190, 524, 601, 1017, 1565, 1619, 2188 |
| AsuII | TTCGAA | 1 cut(s) | 2208 |
| AvaII | GGWCC | 5 cut(s) | 30, 59, 771, 1361, 2538 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 158, 191 |
| BalI | TGGCCA | 1 cut(s) | 910 |
| BamHI | GGATCC | 1 cut(s) | 2389 |
| BbsI | GAAGAC | 1 cut(s) | 926 |
| BbvI | GCAGC | 1 cut(s) | 864 |
| BccI | CCATC | 5 cut(s) | 643, 1204, 1249, 1466, 1912 |
| BceAI | ACGGC | 1 cut(s) | 2094 |
| BciT130I | CCWGG | 1 cut(s) | 2320 |
| BciVI | GTATCC | 2 cut(s) | 782, 1245 |
| BclI | TGATCA | 5 cut(s) | 67, 88, 120, 1666, 1696 |
| BcnI | CCSGG | 1 cut(s) | 1743 |
| BcoDI | GTCTC | 4 cut(s) | 1483, 1591, 2232, 2582 |
| BfaI | CTAG | 8 cut(s) | 198, 1280, 1310, 1719, 1950, 2009, 2343, 2490 |
| BfmI | CTRYAG | 2 cut(s) | 1147, 1974 |
| BfuI | GTATCC | 2 cut(s) | 782, 1245 |
| BglII | AGATCT | 2 cut(s) | 1515, 2566 |
| BisI | GCNGC | 1 cut(s) | 853 |
| BlsI | GCNGC | 1 cut(s) | 854 |
| Bme1390I | CCNGG | 2 cut(s) | 1743, 2320 |
| Bme18I | GGWCC | 5 cut(s) | 30, 59, 771, 1361, 2538 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 835 |
| BmgT120I | GGNCC | 6 cut(s) | 30, 59, 409, 771, 1361, 2538 |
| BmiI | GGNNCC | 6 cut(s) | 773, 1327, 1363, 2391, 2539, 2554 |
| BmrFI | CCNGG | 2 cut(s) | 1743, 2320 |
| BpiI | GAAGAC | 1 cut(s) | 926 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1672, 1704 |
| BpmI | CTGGAG | 1 cut(s) | 2150 |
| Bpu14I | TTCGAA | 1 cut(s) | 2208 |
| BpuMI | CCSGG | 1 cut(s) | 1743 |
| Bsa29I | ATCGAT | 3 cut(s) | 1422, 1431, 2597 |
| BsaAI | YACGTR | 1 cut(s) | 435 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1233 |
| BsaI | GGTCTC | 2 cut(s) | 1591, 2582 |
| BsaJI | CCNNGG | 5 cut(s) | 767, 2073, 2293, 2319, 2547 |
| Bse1I | ACTGG | 1 cut(s) | 1987 |
| Bse3DI | GCAATG | 1 cut(s) | 2229 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1233 |
| BseBI | CCWGG | 1 cut(s) | 2320 |
| BseCI | ATCGAT | 3 cut(s) | 1422, 1431, 2597 |
| BseDI | CCNNGG | 5 cut(s) | 767, 2073, 2293, 2319, 2547 |
| BseGI | GGATG | 3 cut(s) | 635, 1811, 2272 |
| BseJI | GATNNNNATC | 1 cut(s) | 1233 |
| BseMI | GCAATG | 1 cut(s) | 2229 |
| BseMII | CTCAG | 1 cut(s) | 612 |
| BseNI | ACTGG | 1 cut(s) | 1987 |
| BseX3I | CGGCCG | 1 cut(s) | 2107 |
| BseXI | GCAGC | 1 cut(s) | 864 |
| Bsh1236I | CGCG | 1 cut(s) | 489 |
| Bsh1285I | CGRYCG | 1 cut(s) | 2110 |
| BshFI | GGCC | 3 cut(s) | 410, 910, 2109 |
| BshVI | ATCGAT | 3 cut(s) | 1422, 1431, 2597 |
| BsiEI | CGRYCG | 1 cut(s) | 2110 |
| BsiSI | CCGG | 1 cut(s) | 1742 |
| BslFI | GGGAC | 2 cut(s) | 757, 1347 |
| BsmAI | GTCTC | 4 cut(s) | 1483, 1591, 2232, 2582 |
| BsmFI | GGGAC | 2 cut(s) | 757, 1347 |
| BsmI | GAATGC | 1 cut(s) | 2155 |
| BsnI | GGCC | 3 cut(s) | 410, 910, 2109 |
| Bso31I | GGTCTC | 2 cut(s) | 1591, 2582 |
| Bsp119I | TTCGAA | 1 cut(s) | 2208 |
| Bsp1407I | TGTACA | 1 cut(s) | 1118 |
| Bsp19I | CCATGG | 2 cut(s) | 767, 2547 |
| BspACI | CCGC | 5 cut(s) | 489, 655, 1365, 1831, 2394 |
| BspANI | GGCC | 3 cut(s) | 410, 910, 2109 |
| BspCNI | CTCAG | 1 cut(s) | 613 |
| BspDI | ATCGAT | 3 cut(s) | 1422, 1431, 2597 |
| BspFNI | CGCG | 1 cut(s) | 489 |
| BspHI | TCATGA | 3 cut(s) | 91, 877, 2257 |
| BspLI | GGNNCC | 6 cut(s) | 773, 1327, 1363, 2391, 2539, 2554 |
| BspPI | GGATC | 6 cut(s) | 31, 884, 1137, 1983, 2384, 2397 |
| BspT104I | TTCGAA | 1 cut(s) | 2208 |
| BspTNI | GGTCTC | 2 cut(s) | 1591, 2582 |
| BsrBI | CCGCTC | 1 cut(s) | 2396 |
| BsrDI | GCAATG | 1 cut(s) | 2229 |
| BsrGI | TGTACA | 1 cut(s) | 1118 |
| BsrI | ACTGG | 1 cut(s) | 1987 |
| BssECI | CCNNGG | 5 cut(s) | 767, 2073, 2293, 2319, 2547 |
| BssT1I | CCWWGG | 3 cut(s) | 767, 2073, 2547 |
| Bst2UI | CCWGG | 1 cut(s) | 2320 |
| Bst4CI | ACNGT | 3 cut(s) | 1553, 1595, 2041 |
| BstAUI | TGTACA | 1 cut(s) | 1118 |
| BstBAI | YACGTR | 1 cut(s) | 435 |
| BstBI | TTCGAA | 1 cut(s) | 2208 |
| BstDEI | CTNAG | 6 cut(s) | 621, 845, 1392, 1496, 1765, 2059 |
| BstDSI | CCRYGG | 2 cut(s) | 767, 2547 |
| BstF5I | GGATG | 3 cut(s) | 635, 1811, 2272 |
| BstFNI | CGCG | 1 cut(s) | 489 |
| BstHHI | GCGC | 2 cut(s) | 489, 2155 |
| BstMAI | GTCTC | 4 cut(s) | 1483, 1591, 2232, 2582 |
| BstMCI | CGRYCG | 1 cut(s) | 2110 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 2402 |
| BstNI | CCWGG | 1 cut(s) | 2320 |
| BstNSI | RCATGY | 1 cut(s) | 1348 |
| BstSCI | CCNGG | 2 cut(s) | 1741, 2318 |
| BstSFI | CTRYAG | 2 cut(s) | 1147, 1974 |
| BstSNI | TACGTA | 1 cut(s) | 435 |
| BstUI | CGCG | 1 cut(s) | 489 |
| BstV1I | GCAGC | 1 cut(s) | 864 |
| BstV2I | GAAGAC | 1 cut(s) | 926 |
| BstX2I | RGATCY | 4 cut(s) | 36, 1515, 2389, 2566 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 1062, 2386, 2548 |
| BstYI | RGATCY | 4 cut(s) | 36, 1515, 2389, 2566 |
| BstZI | CGGCCG | 1 cut(s) | 2107 |
| Bsu15I | ATCGAT | 3 cut(s) | 1422, 1431, 2597 |
| BsuI | GTATCC | 2 cut(s) | 782, 1245 |
| BsuRI | GGCC | 3 cut(s) | 410, 910, 2109 |
| BsuTUI | ATCGAT | 3 cut(s) | 1422, 1431, 2597 |
| BtgI | CCRYGG | 2 cut(s) | 767, 2547 |
| BtsCI | GGATG | 3 cut(s) | 635, 1811, 2272 |
| BtsIMutI | CAGTG | 1 cut(s) | 1600 |
| CciI | TCATGA | 3 cut(s) | 91, 877, 2257 |
| CfoI | GCGC | 2 cut(s) | 489, 2155 |
| Cfr13I | GGNCC | 6 cut(s) | 30, 59, 409, 771, 1361, 2538 |
| ClaI | ATCGAT | 3 cut(s) | 1422, 1431, 2597 |
| Csp6I | GTAC | 3 cut(s) | 1119, 1509, 2561 |
| CviQI | GTAC | 3 cut(s) | 1119, 1509, 2561 |
| DdeI | CTNAG | 6 cut(s) | 621, 845, 1392, 1496, 1765, 2059 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1497 |
| DriI | GACNNNNNGTC | 1 cut(s) | 835 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1497 |
| EaeI | YGGCCR | 2 cut(s) | 908, 2107 |
| EagI | CGGCCG | 1 cut(s) | 2107 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 835 |
| EciI | GGCGGA | 1 cut(s) | 1846 |
| EclXI | CGGCCG | 1 cut(s) | 2107 |
| Eco105I | TACGTA | 1 cut(s) | 435 |
| Eco130I | CCWWGG | 3 cut(s) | 767, 2073, 2547 |
| Eco31I | GGTCTC | 2 cut(s) | 1591, 2582 |
| Eco32I | GATATC | 6 cut(s) | 252, 1035, 1050, 1109, 1426, 2104 |
| Eco47I | GGWCC | 5 cut(s) | 30, 59, 771, 1361, 2538 |
| Eco52I | CGGCCG | 1 cut(s) | 2107 |
| Eco57I | CTGAAG | 1 cut(s) | 902 |
| EcoRI | GAATTC | 2 cut(s) | 1252, 1622 |
| EcoRII | CCWGG | 1 cut(s) | 2318 |
| EcoRV | GATATC | 6 cut(s) | 252, 1035, 1050, 1109, 1426, 2104 |
| EcoT14I | CCWWGG | 3 cut(s) | 767, 2073, 2547 |
| EcoT22I | ATGCAT | 2 cut(s) | 899, 2429 |
| ErhI | CCWWGG | 3 cut(s) | 767, 2073, 2547 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 662, 694, 1259, 1291 |
| FaqI | GGGAC | 2 cut(s) | 757, 1347 |
| FauI | CCCGC | 3 cut(s) | 648, 1372, 2401 |
| FbaI | TGATCA | 5 cut(s) | 67, 88, 120, 1666, 1696 |
| Fnu4HI | GCNGC | 1 cut(s) | 853 |
| FokI | GGATG | 3 cut(s) | 622, 1798, 2279 |
| Fsp4HI | GCNGC | 1 cut(s) | 853 |
| FspBI | CTAG | 8 cut(s) | 198, 1280, 1310, 1719, 1950, 2009, 2343, 2490 |
| GlaI | GCGC | 2 cut(s) | 488, 2154 |
| GluI | GCNGC | 1 cut(s) | 853 |
| GsuI | CTGGAG | 1 cut(s) | 2150 |
| HaeIII | GGCC | 3 cut(s) | 410, 910, 2109 |
| HapII | CCGG | 1 cut(s) | 1742 |
| HhaI | GCGC | 2 cut(s) | 489, 2155 |
| Hin6I | GCGC | 2 cut(s) | 487, 2153 |
| HinP1I | GCGC | 2 cut(s) | 487, 2153 |
| HincII | GTYRAC | 1 cut(s) | 1771 |
| HindII | GTYRAC | 1 cut(s) | 1771 |
| HpaII | CCGG | 1 cut(s) | 1742 |
| HphI | GGTGA | 8 cut(s) | 132, 190, 524, 601, 1017, 1565, 1619, 2188 |
| Hpy166II | GTNNAC | 5 cut(s) | 977, 1121, 1549, 1771, 2308 |
| Hpy8I | GTNNAC | 5 cut(s) | 977, 1121, 1549, 1771, 2308 |
| HpyAV | CCTTC | 3 cut(s) | 1100, 2210, 2433 |
| HpyCH4III | ACNGT | 3 cut(s) | 1553, 1595, 2041 |
| HpyCH4IV | ACGT | 3 cut(s) | 434, 1387, 1545 |
| HpyCH4V | TGCA | 4 cut(s) | 78, 897, 2235, 2427 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 2402 |
| HpyF3I | CTNAG | 6 cut(s) | 621, 845, 1392, 1496, 1765, 2059 |
| HpySE526I | ACGT | 3 cut(s) | 434, 1387, 1545 |
| HspAI | GCGC | 2 cut(s) | 487, 2153 |
| Ksp22I | TGATCA | 5 cut(s) | 67, 88, 120, 1666, 1696 |
| LmnI | GCTCC | 4 cut(s) | 1745, 2125, 2131, 2410 |
| Lsp1109I | GCAGC | 1 cut(s) | 864 |
| MaeI | CTAG | 8 cut(s) | 198, 1280, 1310, 1719, 1950, 2009, 2343, 2490 |
| MaeII | ACGT | 3 cut(s) | 434, 1387, 1545 |
| MaeIII | GTNAC | 6 cut(s) | 377, 542, 589, 1023, 1155, 2111 |
| MbiI | CCGCTC | 1 cut(s) | 2396 |
| MfeI | CAATTG | 2 cut(s) | 268, 536 |
| MflI | RGATCY | 4 cut(s) | 36, 1515, 2389, 2566 |
| MlsI | TGGCCA | 1 cut(s) | 910 |
| MluNI | TGGCCA | 1 cut(s) | 910 |
| MlyI | GAGTC | 6 cut(s) | 179, 1031, 1690, 1709, 2285, 2362 |
| MmeI | TCCRAC | 1 cut(s) | 2154 |
| MnlI | CCTC | 9 cut(s) | 122, 458, 485, 639, 1082, 1248, 1885, 1955, 2303 |
| Mox20I | TGGCCA | 1 cut(s) | 910 |
| Mph1103I | ATGCAT | 2 cut(s) | 899, 2429 |
| MroXI | GAANNNNTTC | 5 cut(s) | 749, 1005, 1256, 2054, 2516 |
| MscI | TGGCCA | 1 cut(s) | 910 |
| MseI | TTAA | 7 cut(s) | 153, 162, 681, 1265, 1646, 2417, 2430 |
| MslI | CAYNNNNRTG | 2 cut(s) | 45, 2546 |
| Msp20I | TGGCCA | 1 cut(s) | 910 |
| MspI | CCGG | 1 cut(s) | 1742 |
| MspR9I | CCNGG | 2 cut(s) | 1743, 2320 |
| MunI | CAATTG | 2 cut(s) | 268, 536 |
| Mva1269I | GAATGC | 1 cut(s) | 2155 |
| MvaI | CCWGG | 1 cut(s) | 2320 |
| MvnI | CGCG | 1 cut(s) | 489 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 2402 |
| NciI | CCSGG | 1 cut(s) | 1743 |
| NcoI | CCATGG | 2 cut(s) | 767, 2547 |
| NlaIV | GGNNCC | 6 cut(s) | 773, 1327, 1363, 2391, 2539, 2554 |
| NmuCI | GTSAC | 3 cut(s) | 589, 1023, 2111 |
| NsiI | ATGCAT | 2 cut(s) | 899, 2429 |
| NspI | RCATGY | 1 cut(s) | 1348 |
| NspV | TTCGAA | 1 cut(s) | 2208 |
| PagI | TCATGA | 3 cut(s) | 91, 877, 2257 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 1428, 1586 |
| PctI | GAATGC | 1 cut(s) | 2155 |
| PdmI | GAANNNNTTC | 5 cut(s) | 749, 1005, 1256, 2054, 2516 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 586, 1910 |
| PkrI | GCNGC | 1 cut(s) | 854 |
| PleI | GAGTC | 6 cut(s) | 179, 1030, 1689, 1709, 2284, 2362 |
| PpsI | GAGTC | 6 cut(s) | 179, 1030, 1689, 1709, 2284, 2362 |
| Ppu21I | YACGTR | 1 cut(s) | 435 |
| Psp6I | CCWGG | 1 cut(s) | 2318 |
| PspGI | CCWGG | 1 cut(s) | 2318 |
| PspN4I | GGNNCC | 6 cut(s) | 773, 1327, 1363, 2391, 2539, 2554 |
| PspPI | GGNCC | 6 cut(s) | 30, 59, 409, 771, 1361, 2538 |
| PsuI | RGATCY | 4 cut(s) | 36, 1515, 2389, 2566 |
| RsaI | GTAC | 3 cut(s) | 1120, 1510, 2562 |
| RsaNI | GTAC | 3 cut(s) | 1119, 1509, 2561 |
| RseI | CAYNNNNRTG | 2 cut(s) | 45, 2546 |
| SaqAI | TTAA | 7 cut(s) | 153, 162, 681, 1265, 1646, 2417, 2430 |
| SatI | GCNGC | 1 cut(s) | 853 |
| Sau96I | GGNCC | 6 cut(s) | 30, 59, 409, 771, 1361, 2538 |
| SchI | GAGTC | 6 cut(s) | 179, 1031, 1690, 1709, 2285, 2362 |
| ScrFI | CCNGG | 2 cut(s) | 1743, 2320 |
| SfcI | CTRYAG | 2 cut(s) | 1147, 1974 |
| SfuI | TTCGAA | 1 cut(s) | 2208 |
| SinI | GGWCC | 5 cut(s) | 30, 59, 771, 1361, 2538 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 45, 2546 |
| SnaBI | TACGTA | 1 cut(s) | 435 |
| SsiI | CCGC | 5 cut(s) | 489, 655, 1365, 1831, 2394 |
| SspI | AATATT | 4 cut(s) | 477, 629, 1403, 2350 |
| SspMI | CTAG | 8 cut(s) | 198, 1280, 1310, 1719, 1950, 2009, 2343, 2490 |
| StyD4I | CCNGG | 2 cut(s) | 1741, 2318 |
| StyI | CCWWGG | 3 cut(s) | 767, 2073, 2547 |
| TaaI | ACNGT | 3 cut(s) | 1553, 1595, 2041 |
| TaiI | ACGT | 3 cut(s) | 437, 1390, 1548 |
| TaqII | GACCGA | 1 cut(s) | 2199 |
| TatI | WGTACW | 2 cut(s) | 1118, 1508 |
| Tru1I | TTAA | 7 cut(s) | 153, 162, 681, 1265, 1646, 2417, 2430 |
| Tru9I | TTAA | 7 cut(s) | 153, 162, 681, 1265, 1646, 2417, 2430 |
| TscAI | CASTG | 1 cut(s) | 1600 |
| TseFI | GTSAC | 3 cut(s) | 589, 1023, 2111 |
| TseI | GCWGC | 1 cut(s) | 852 |
| Tsp45I | GTSAC | 3 cut(s) | 589, 1023, 2111 |
| TspGWI | ACGGA | 1 cut(s) | 2138 |
| TspRI | CASTG | 1 cut(s) | 1600 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 586, 1910 |
| VpaK11BI | GGWCC | 5 cut(s) | 30, 59, 771, 1361, 2538 |
| XapI | RAATTY | 7 cut(s) | 113, 802, 859, 1252, 1622, 1671, 2187 |
| XbaI | TCTAGA | 1 cut(s) | 1309 |
| XceI | RCATGY | 1 cut(s) | 1348 |
| XmnI | GAANNNNTTC | 5 cut(s) | 749, 1005, 1256, 2054, 2516 |
| XspI | CTAG | 8 cut(s) | 198, 1280, 1310, 1719, 1950, 2009, 2343, 2490 |
| Zsp2I | ATGCAT | 2 cut(s) | 899, 2429 |