MD15G1364200.v1.1

function. Its presence in a non-photosynthetic plant (Epifagus virginiana) and experiments in tobacco indicate that it has an essential function which is probably not related to photosynthesis

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0004273
Physical Location & Seq
Reverse (-)
44127544 .. 44128077
534 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1364200.v1.1.491

Sequence Viewer

Length: 390 bp
ATGATTCATCGAAATAATGAGTCACCATTAATATTGACACATGAGATCACCATTTTCCTCTATTCAATCATTTTCCTTCTTGTTGTTGTTGGATATCTCGTTTGTACACATATTCTCTTTGTTTCTCGAGCCTATAGAGATTCTTTAGAAGAAATACGGGCTTCTAGCGACAACATACTATGGGGTGGTGGTCCCGCTTATAAGGTCAAATCAATACGTTCTAAGAAGAAATATTTGAATGTCAATCTCATCGATATCATTGATTTCATAAGTATCACACCAAATCCCATTAATCGAATTGCTTTTTCAAGAAATACGAGACATTTAAGTCATACAAGTAAAAAGATCCATTCATTGATAAGAAAAAGAAAAAATGTGAAAGGTGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA DUF825

Protein Analysis

130

Amino Acids

14.9

Weight (kDa)

10.17

Isoelectric Point (pI)

48.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ycf2 PF05695 1 - 46 6.3e-12 Ycf2 family
Ycf2 PF05695 46 - 113 1.1e-29 Ycf2 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 201
AasI GACNNNNNNGTC 1 cut(s) 327
AciI CCGC 1 cut(s) 195
AclWI GGATC 1 cut(s) 340
AfaI GTAC 1 cut(s) 106
AgsI TTSAA 3 cut(s) 66, 238, 309
Alw26I GTCTC 1 cut(s) 313
AlwI GGATC 1 cut(s) 340
Ama87I CYCGRG 1 cut(s) 126
AseI ATTAAT 2 cut(s) 29, 291
AspS9I GGNCC 1 cut(s) 191
AsuHPI GGTGA 2 cut(s) 15, 40
AvaI CYCGRG 1 cut(s) 126
AvaII GGWCC 1 cut(s) 191
BcoDI GTCTC 1 cut(s) 313
BfaI CTAG 1 cut(s) 165
BfmI CTRYAG 1 cut(s) 133
Bme18I GGWCC 1 cut(s) 191
BmeT110I CYCGRG 1 cut(s) 126
BmgT120I GGNCC 1 cut(s) 191
BmiI GGNNCC 1 cut(s) 193
Bsa29I ATCGAT 1 cut(s) 252
BseCI ATCGAT 1 cut(s) 252
BshVI ATCGAT 1 cut(s) 252
BsiHKCI CYCGRG 1 cut(s) 126
BslFI GGGAC 1 cut(s) 177
BsmAI GTCTC 1 cut(s) 313
BsmFI GGGAC 1 cut(s) 177
BsoBI CYCGRG 1 cut(s) 126
Bsp1407I TGTACA 1 cut(s) 104
Bsp143I GATC 2 cut(s) 45, 345
BspACI CCGC 1 cut(s) 195
BspDI ATCGAT 1 cut(s) 252
BspLI GGNNCC 1 cut(s) 193
BspPI GGATC 1 cut(s) 340
BsrGI TGTACA 1 cut(s) 104
BssMI GATC 2 cut(s) 45, 345
BstAUI TGTACA 1 cut(s) 104
BstDEI CTNAG 1 cut(s) 222
BstKTI GATC 2 cut(s) 48, 348
BstMAI GTCTC 1 cut(s) 313
BstMBI GATC 2 cut(s) 45, 345
BstSFI CTRYAG 1 cut(s) 133
BstX2I RGATCY 1 cut(s) 345
BstYI RGATCY 1 cut(s) 345
Bsu15I ATCGAT 1 cut(s) 252
BsuTUI ATCGAT 1 cut(s) 252
Cfr13I GGNCC 1 cut(s) 191
ClaI ATCGAT 1 cut(s) 252
Csp6I GTAC 1 cut(s) 105
CviAII CATG 1 cut(s) 41
CviJI RGCY 2 cut(s) 131, 161
CviKI_1 RGCY 2 cut(s) 131, 161
CviQI GTAC 1 cut(s) 105
DdeI CTNAG 1 cut(s) 222
DpnI GATC 2 cut(s) 47, 347
DpnII GATC 2 cut(s) 45, 345
DrdI GACNNNNNNGTC 1 cut(s) 327
DseDI GACNNNNNNGTC 1 cut(s) 327
Eco32I GATATC 2 cut(s) 95, 256
Eco47I GGWCC 1 cut(s) 191
Eco88I CYCGRG 1 cut(s) 126
EcoRV GATATC 2 cut(s) 95, 256
FaeI CATG 1 cut(s) 44
FaiI YATR 8 cut(s) 42, 111, 135, 176, 181, 201, 269, 333
FaqI GGGAC 1 cut(s) 177
FatI CATG 1 cut(s) 40
FauI CCCGC 1 cut(s) 202
FspBI CTAG 1 cut(s) 165
Hin1II CATG 1 cut(s) 44
HinfI GANTC 3 cut(s) 4, 20, 140
HphI GGTGA 2 cut(s) 15, 40
Hpy166II GTNNAC 1 cut(s) 107
Hpy188III TCNNGA 2 cut(s) 126, 309
Hpy8I GTNNAC 1 cut(s) 107
HpyAV CCTTC 1 cut(s) 86
HpyCH4IV ACGT 1 cut(s) 217
HpyF3I CTNAG 1 cut(s) 222
HpySE526I ACGT 1 cut(s) 217
Hsp92II CATG 1 cut(s) 44
Kzo9I GATC 2 cut(s) 45, 345
MaeI CTAG 1 cut(s) 165
MaeII ACGT 1 cut(s) 217
MaeIII GTNAC 1 cut(s) 21
MalI GATC 2 cut(s) 47, 347
MboI GATC 2 cut(s) 45, 345
MboII GAAGA 2 cut(s) 161, 238
MflI RGATCY 1 cut(s) 345
MluCI AATT 1 cut(s) 297
MlyI GAGTC 1 cut(s) 29
MmeI TCCRAC 1 cut(s) 70
MnlI CCTC 1 cut(s) 68
MseI TTAA 3 cut(s) 29, 291, 326
NdeII GATC 2 cut(s) 45, 345
NlaIII CATG 1 cut(s) 44
NlaIV GGNNCC 1 cut(s) 193
NmuCI GTSAC 1 cut(s) 21
PaeR7I CTCGAG 1 cut(s) 126
PfeI GAWTC 2 cut(s) 4, 140
PleI GAGTC 1 cut(s) 28
PpsI GAGTC 1 cut(s) 28
PshBI ATTAAT 2 cut(s) 29, 291
PsiI TTATAA 1 cut(s) 201
PspN4I GGNNCC 1 cut(s) 193
PspPI GGNCC 1 cut(s) 191
PsuI RGATCY 1 cut(s) 345
RsaI GTAC 1 cut(s) 106
RsaNI GTAC 1 cut(s) 105
SaqAI TTAA 3 cut(s) 29, 291, 326
Sau3AI GATC 2 cut(s) 45, 345
Sau96I GGNCC 1 cut(s) 191
SchI GAGTC 1 cut(s) 29
SetI ASST 3 cut(s) 207, 220, 385
SfcI CTRYAG 1 cut(s) 133
Sfr274I CTCGAG 1 cut(s) 126
SinI GGWCC 1 cut(s) 191
SlaI CTCGAG 1 cut(s) 126
SmlI CTYRAG 1 cut(s) 126
SmoI CTYRAG 1 cut(s) 126
Sse9I AATT 1 cut(s) 297
SsiI CCGC 1 cut(s) 195
SspI AATATT 2 cut(s) 33, 233
SspMI CTAG 1 cut(s) 165
TaiI ACGT 1 cut(s) 220
TaqI TCGA 4 cut(s) 10, 127, 252, 295
TasI AATT 1 cut(s) 297
TatI WGTACW 1 cut(s) 104
TfiI GAWTC 2 cut(s) 4, 140
Tru1I TTAA 3 cut(s) 29, 291, 326
Tru9I TTAA 3 cut(s) 29, 291, 326
TseFI GTSAC 1 cut(s) 21
Tsp45I GTSAC 1 cut(s) 21
TspDTI ATGAA 2 cut(s) 256, 342
VpaK11BI GGWCC 1 cut(s) 191
VspI ATTAAT 2 cut(s) 29, 291
XhoI CTCGAG 1 cut(s) 126
XspI CTAG 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.