RchiOBHm_Chr2g0102151

function. Its presence in a non-photosynthetic plant (Epifagus virginiana) and experiments in tobacco indicate that it has an essential function which is probably not related to photosynthesis

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0004273
Physical Location & Seq
Reverse (-)
13594308 .. 13595153
846 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ47663

Sequence Viewer

Length: 846 bp
ATGTATTTTATCATCAACTTGATGAATTTTGAGAATGATTCTGATCTAGTTCATGGCCTATTAGAAGTAGAAGTAGAAGGCTCTCTGGTGGGATCCTCCAAGACAGAAAAAGATTGTAGTAAGTTTGATAATGATCGAGTGACATTGCTTCTTCGGCCCGAACCAAGGAATCCCTTAGATATGATGCAAAATGGATCTTGTTCTACCATTGATAAGAGATTTTTCTCTGAACAATACGAATCGGAGTTTGAAGAAGGGGAAGGAGAAGGAGTCCTCGACCTACAACGGATAGAGGAGGATTTATTCAATCACATAGTTTGGGCTCCTAGAATATGGCGCCCTTGGGGCTTTCTATTTGATTGTATCGAAAGGCCCAATGAAATGGGATTTCCCTATTGGGTCAGGTCATTTCAGGGTAAGCGGATCATTTATGATGAAAAGGATGGGCTTCAAGAGAATGATTCGGAGTTCTTGCAGAGTCAGTACCAGACACGAGATAGATCTTCCAAAGAACAAGGCTTCTTTCGAATAAGCCAATTAGTTTGGGATCTTGCGGATCCATTCTTTTTTCTATTCAAAGATCCGCCTTTTATCTCTGTGTTTTCACATCGAGAATTCTTTGCAGATGAAGAGATGCCAAAGAGGCTTCTTACTTTCCAAACAGATCTTCCTACAACTCTATATAAACGCTGGTTTATCAAGAATACACAAGAAAGGCACTTCGAATTGTTGATTCATCGCCAGAGATGGCTTAGAACCAACAGTTCATTATCTAATGGATTTTTCTGTTCTAATACTCCATCCGAGAGTTATAAGTATTTATCAAAGCTGTTCCTATCTAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA DUF825

Protein Analysis

281

Amino Acids

33.61

Weight (kDa)

4.96

Isoelectric Point (pI)

54.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 813
AccB1I GGYRCC 1 cut(s) 336
AciI CCGC 3 cut(s) 421, 554, 584
AclWI GGATC 8 cut(s) 87, 100, 202, 431, 551, 555, 564, 575
AcsI RAATTY 2 cut(s) 25, 614
AcyI GRCGYC 1 cut(s) 337
AfaI GTAC 1 cut(s) 485
AfiI CCNNNNNNNGG 1 cut(s) 165
AgsI TTSAA 4 cut(s) 251, 307, 452, 577
AjuI GAANNNNNNNTTGG 2 cut(s) 651, 683
AluBI AGCT 1 cut(s) 829
AluI AGCT 1 cut(s) 829
AlwI GGATC 8 cut(s) 87, 100, 202, 431, 551, 555, 564, 575
AoxI GGCC 3 cut(s) 55, 155, 371
ApoI RAATTY 2 cut(s) 25, 614
AspLEI GCGC 1 cut(s) 339
AspS9I GGNCC 2 cut(s) 156, 372
AsuII TTCGAA 2 cut(s) 526, 723
BamHI GGATCC 2 cut(s) 92, 556
BanI GGYRCC 1 cut(s) 336
BanII GRGCYC 1 cut(s) 325
BauI CACGAG 1 cut(s) 492
BccI CCATC 3 cut(s) 437, 741, 808
BfaI CTAG 2 cut(s) 47, 327
BfoI RGCGCY 1 cut(s) 340
BglI GCCNNNNNGGC 2 cut(s) 345, 643
BglII AGATCT 2 cut(s) 500, 664
BmgT120I GGNCC 2 cut(s) 156, 372
BmiI GGNNCC 4 cut(s) 94, 324, 338, 558
BmsI GCATC 2 cut(s) 174, 624
Bpu14I TTCGAA 2 cut(s) 526, 723
BsaBI GATNNNNATC 2 cut(s) 42, 132
BsaHI GRCGYC 1 cut(s) 337
BsaJI CCNNGG 2 cut(s) 164, 341
BsaXI ACNNNNNCTCC 2 cut(s) 255, 285
Bsc4I CCNNNNNNNGG 1 cut(s) 165
Bse3DI GCAATG 1 cut(s) 143
Bse8I GATNNNNATC 2 cut(s) 42, 132
BseDI CCNNGG 2 cut(s) 164, 341
BseGI GGATG 2 cut(s) 448, 800
BseJI GATNNNNATC 2 cut(s) 42, 132
BseLI CCNNNNNNNGG 1 cut(s) 165
BseMI GCAATG 1 cut(s) 143
BseRI GAGGAG 1 cut(s) 308
BshFI GGCC 3 cut(s) 57, 157, 373
BshNI GGYRCC 1 cut(s) 336
BslI CCNNNNNNNGG 1 cut(s) 165
BsnI GGCC 3 cut(s) 57, 157, 373
Bsp119I TTCGAA 2 cut(s) 526, 723
Bsp1286I GDGCHC 1 cut(s) 325
BspACI CCGC 3 cut(s) 421, 554, 584
BspANI GGCC 3 cut(s) 57, 157, 373
BspLI GGNNCC 4 cut(s) 94, 324, 338, 558
BspPI GGATC 8 cut(s) 87, 100, 202, 431, 551, 555, 564, 575
BspT104I TTCGAA 2 cut(s) 526, 723
BspT107I GGYRCC 1 cut(s) 336
BsrDI GCAATG 1 cut(s) 143
BssECI CCNNGG 2 cut(s) 164, 341
BssNI GRCGYC 1 cut(s) 337
BssSI CACGAG 1 cut(s) 492
BssT1I CCWWGG 2 cut(s) 164, 341
Bst2BI CACGAG 1 cut(s) 492
Bst4CI ACNGT 1 cut(s) 764
Bst6I CTCTTC 1 cut(s) 624
BstACI GRCGYC 1 cut(s) 337
BstBI TTCGAA 2 cut(s) 526, 723
BstDEI CTNAG 2 cut(s) 175, 752
BstF5I GGATG 2 cut(s) 448, 800
BstH2I RGCGCY 1 cut(s) 340
BstHHI GCGC 1 cut(s) 339
BstMWI GCNNNNNNNGC 3 cut(s) 154, 345, 643
BstX2I RGATCY 7 cut(s) 92, 194, 500, 547, 556, 580, 664
BstXI CCANNNNNNTGG 1 cut(s) 382
BstYI RGATCY 7 cut(s) 92, 194, 500, 547, 556, 580, 664
BsuRI GGCC 3 cut(s) 57, 157, 373
BtgZI GCGATG 1 cut(s) 722
BtsCI GGATG 2 cut(s) 448, 800
CfoI GCGC 1 cut(s) 339
Cfr13I GGNCC 2 cut(s) 156, 372
Csp6I GTAC 1 cut(s) 484
CviAII CATG 1 cut(s) 53
CviQI GTAC 1 cut(s) 484
DdeI CTNAG 2 cut(s) 175, 752
DinI GGCGCC 1 cut(s) 338
Eam1104I CTCTTC 1 cut(s) 624
EarI CTCTTC 1 cut(s) 624
EciI GGCGGA 1 cut(s) 573
Eco130I CCWWGG 2 cut(s) 164, 341
Eco24I GRGCYC 1 cut(s) 325
EcoRI GAATTC 1 cut(s) 614
EcoT14I CCWWGG 2 cut(s) 164, 341
EcoT38I GRGCYC 1 cut(s) 325
EgeI GGCGCC 1 cut(s) 338
EheI GGCGCC 1 cut(s) 338
ErhI CCWWGG 2 cut(s) 164, 341
FaeI CATG 1 cut(s) 56
FaiI YATR 8 cut(s) 54, 182, 314, 334, 432, 682, 684, 813
FatI CATG 1 cut(s) 52
FokI GGATG 2 cut(s) 455, 787
FriOI GRGCYC 1 cut(s) 325
FspBI CTAG 2 cut(s) 47, 327
GlaI GCGC 1 cut(s) 338
HaeII RGCGCY 1 cut(s) 340
HaeIII GGCC 3 cut(s) 57, 157, 373
HhaI GCGC 1 cut(s) 339
Hin1I GRCGYC 1 cut(s) 337
Hin1II CATG 1 cut(s) 56
Hin6I GCGC 1 cut(s) 337
HinP1I GCGC 1 cut(s) 337
HinfI GANTC 7 cut(s) 38, 169, 239, 270, 461, 478, 733
Hpy188I TCNGA 5 cut(s) 43, 229, 244, 466, 805
Hpy188III TCNNGA 3 cut(s) 452, 611, 700
HpyAV CCTTC 4 cut(s) 71, 248, 254, 260
HpyCH4III ACNGT 1 cut(s) 764
HpyCH4V TGCA 3 cut(s) 187, 475, 623
HpyF10VI GCNNNNNNNGC 3 cut(s) 154, 345, 643
HpyF3I CTNAG 2 cut(s) 175, 752
Hsp92I GRCGYC 1 cut(s) 337
Hsp92II CATG 1 cut(s) 56
HspAI GCGC 1 cut(s) 337
KasI GGCGCC 1 cut(s) 336
LmnI GCTCC 1 cut(s) 328
LpnPI CCDG 6 cut(s) 71, 388, 398, 500, 676, 755
LweI GCATC 2 cut(s) 174, 624
MaeI CTAG 2 cut(s) 47, 327
MaeIII GTNAC 1 cut(s) 139
MboII GAAGA 5 cut(s) 143, 263, 495, 641, 659
MflI RGATCY 7 cut(s) 92, 194, 500, 547, 556, 580, 664
MhlI GDGCHC 1 cut(s) 325
MluCI AATT 4 cut(s) 25, 536, 614, 725
Mly113I GGCGCC 1 cut(s) 337
MlyI GAGTC 2 cut(s) 279, 487
MnlI CCTC 5 cut(s) 106, 284, 286, 289, 636
MwoI GCNNNNNNNGC 3 cut(s) 154, 345, 643
NarI GGCGCC 1 cut(s) 337
NlaIII CATG 1 cut(s) 56
NlaIV GGNNCC 4 cut(s) 94, 324, 338, 558
NmuCI GTSAC 1 cut(s) 139
NspV TTCGAA 2 cut(s) 526, 723
PfeI GAWTC 5 cut(s) 38, 169, 239, 461, 733
PleI GAGTC 2 cut(s) 278, 486
PluTI GGCGCC 1 cut(s) 340
PpsI GAGTC 2 cut(s) 278, 486
PsiI TTATAA 1 cut(s) 813
PspN4I GGNNCC 4 cut(s) 94, 324, 338, 558
PspPI GGNCC 2 cut(s) 156, 372
PsuI RGATCY 7 cut(s) 92, 194, 500, 547, 556, 580, 664
RsaI GTAC 1 cut(s) 485
RsaNI GTAC 1 cut(s) 484
Sau96I GGNCC 2 cut(s) 156, 372
SchI GAGTC 2 cut(s) 279, 487
SduI GDGCHC 1 cut(s) 325
SetI ASST 3 cut(s) 282, 407, 831
SfaNI GCATC 2 cut(s) 174, 624
SfoI GGCGCC 1 cut(s) 338
SfuI TTCGAA 2 cut(s) 526, 723
Sse9I AATT 4 cut(s) 25, 536, 614, 725
SsiI CCGC 3 cut(s) 421, 554, 584
SspDI GGCGCC 1 cut(s) 336
SspMI CTAG 2 cut(s) 47, 327
StyI CCWWGG 2 cut(s) 164, 341
TaaI ACNGT 1 cut(s) 764
TaqI TCGA 6 cut(s) 136, 276, 366, 526, 610, 723
TasI AATT 4 cut(s) 25, 536, 614, 725
TfiI GAWTC 5 cut(s) 38, 169, 239, 461, 733
TseFI GTSAC 1 cut(s) 139
Tsp45I GTSAC 1 cut(s) 139
TspDTI ATGAA 7 cut(s) 38, 41, 393, 450, 642, 725, 756
TspGWI ACGGA 1 cut(s) 301
XapI RAATTY 2 cut(s) 25, 614
XspI CTAG 2 cut(s) 47, 327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.