RchiOBHm_Chr2g0118531

30S ribosomal protein S19

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0004273
Physical Location & Seq
Forward (+)
30724873 .. 30725022
150 bp
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UTR
Exon/CDS
Intron
PRQ49131

Sequence Viewer

Length: 150 bp
ATGATCAGGCATACTATTGCTATCCATAATGGAAAGGAGCATTTGCCTATTTATATAATAGATCGTATGGTAGGACCTAAATTGGGAGAATTTTCACCGACTCTAAATTTCCGGGGGCATGCGAAAAGTGATAATAGATCTCGGCGTTAA

Protein Analysis

49

Amino Acids

5.68

Weight (kDa)

10.9

Isoelectric Point (pI)

39.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S19 PF00203 1 - 40 9.1e-15 Ribosomal protein S19
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 89, 106
AfiI CCNNNNNNNGG 1 cut(s) 83
ApoI RAATTY 2 cut(s) 89, 106
AspS9I GGNCC 1 cut(s) 74
AsuC2I CCSGG 1 cut(s) 113
AsuHPI GGTGA 1 cut(s) 87
AvaII GGWCC 1 cut(s) 74
BclI TGATCA 1 cut(s) 3
BcnI CCSGG 1 cut(s) 113
BglII AGATCT 1 cut(s) 137
Bme1390I CCNGG 1 cut(s) 113
Bme18I GGWCC 1 cut(s) 74
BmgT120I GGNCC 1 cut(s) 74
BmrFI CCNGG 1 cut(s) 113
BpuMI CCSGG 1 cut(s) 113
BsaJI CCNNGG 1 cut(s) 112
Bsc4I CCNNNNNNNGG 1 cut(s) 83
BseDI CCNNGG 1 cut(s) 112
BseLI CCNNNNNNNGG 1 cut(s) 83
BsiSI CCGG 1 cut(s) 112
BslI CCNNNNNNNGG 1 cut(s) 83
Bsp143I GATC 3 cut(s) 3, 61, 137
BssECI CCNNGG 1 cut(s) 112
BssMI GATC 3 cut(s) 3, 61, 137
BstC8I GCNNGC 1 cut(s) 120
BstKTI GATC 3 cut(s) 6, 64, 140
BstMBI GATC 3 cut(s) 3, 61, 137
BstNSI RCATGY 1 cut(s) 122
BstSCI CCNGG 1 cut(s) 111
BstX2I RGATCY 1 cut(s) 137
BstYI RGATCY 1 cut(s) 137
Cac8I GCNNGC 1 cut(s) 120
Cfr13I GGNCC 1 cut(s) 74
CviAII CATG 1 cut(s) 119
DpnI GATC 3 cut(s) 5, 63, 139
DpnII GATC 3 cut(s) 3, 61, 137
Eco47I GGWCC 1 cut(s) 74
EcoO109I RGGNCCY 1 cut(s) 74
FaeI CATG 1 cut(s) 122
FaiI YATR 6 cut(s) 12, 27, 54, 56, 68, 120
FatI CATG 1 cut(s) 118
FbaI TGATCA 1 cut(s) 3
HapII CCGG 1 cut(s) 112
Hin1II CATG 1 cut(s) 122
HinfI GANTC 1 cut(s) 100
HpaII CCGG 1 cut(s) 112
HphI GGTGA 1 cut(s) 87
Hsp92II CATG 1 cut(s) 122
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 3 cut(s) 3, 61, 137
LmnI GCTCC 1 cut(s) 37
LpnPI CCDG 1 cut(s) 125
MalI GATC 3 cut(s) 5, 63, 139
MboI GATC 3 cut(s) 3, 61, 137
MflI RGATCY 1 cut(s) 137
MluCI AATT 3 cut(s) 80, 89, 106
MlyI GAGTC 1 cut(s) 94
MseI TTAA 1 cut(s) 148
MspI CCGG 1 cut(s) 112
MspR9I CCNGG 1 cut(s) 113
NciI CCSGG 1 cut(s) 113
NdeII GATC 3 cut(s) 3, 61, 137
NlaIII CATG 1 cut(s) 122
NmeAIII GCCGAG 1 cut(s) 121
NspI RCATGY 1 cut(s) 122
PaeI GCATGC 1 cut(s) 122
PleI GAGTC 1 cut(s) 94
PpsI GAGTC 1 cut(s) 94
PpuMI RGGWCCY 1 cut(s) 74
Psp5II RGGWCCY 1 cut(s) 74
PspPI GGNCC 1 cut(s) 74
PspPPI RGGWCCY 1 cut(s) 74
PsuI RGATCY 1 cut(s) 137
SaqAI TTAA 1 cut(s) 148
Sau3AI GATC 3 cut(s) 3, 61, 137
Sau96I GGNCC 1 cut(s) 74
SchI GAGTC 1 cut(s) 94
ScrFI CCNGG 1 cut(s) 113
SetI ASST 1 cut(s) 79
SgeI CNNG 4 cut(s) 19, 124, 125, 131
SinI GGWCC 1 cut(s) 74
SphI GCATGC 1 cut(s) 122
Sse9I AATT 3 cut(s) 80, 89, 106
StyD4I CCNGG 1 cut(s) 111
TasI AATT 3 cut(s) 80, 89, 106
Tru1I TTAA 1 cut(s) 148
Tru9I TTAA 1 cut(s) 148
VpaK11BI GGWCC 1 cut(s) 74
XapI RAATTY 2 cut(s) 89, 106
XceI RCATGY 1 cut(s) 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.