RLG00000000213

function. Its presence in a non-photosynthetic plant (Epifagus virginiana) and experiments in tobacco indicate that it has an essential function which is probably not related to photosynthesis

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0004273
Physical Location & Seq
Reverse (-)
36487 .. 38470
1984 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000000213

Sequence Viewer

Length: 1884 bp
ATGGACAAACCCTTTTCGCTCCGTTTAGCCCTATCCCTCTCTAGGGGTATTTTAGTGATAGGTTCTATAGGAACTGGACGATCCTATTTGGTCAAATACCTAGCGACAAACTCCTATGTTCCTTTCATTACAGTATTTCTGAACAAGTTCCTGGATAACAAGCCCAAGGGTTTTCTTGTTGATGATAGTGACGATATTGATGATAGTGACGATATCGGCCGTGACCTTGATACGGAGCTGGAGCTTCTAACTATGATGAATGCGCTAACTATGGATATGATGCCGGAAATAGACCGATTTTATATCACCCTTCAATTCGAATTAGCAAAAGCAATGTCTCCTTGCATAATATGGATTCCAAACATTCATGATCTGGATGTGAATGAGTCGAATTACTTATCCCTCGGTTTATTAGTGAACTATCTCTCCAGGGATTGTGAAAGATGTTCCACTAGAAATATTCTTGTTATTGCTTCGACTCATATTCCCAAAAAAGTGGATCCCGCTCTAATAGCTCCGAATAAATTAAATACATGCATTAAGATACGAAGGCTTCTTATTCCACAACAGCGAAAGCACTTTTTCACTCTTTCATATACTAGGGGATTTCACTTGGAAAAGAAAATGTTCTATACTAATGGATTCGGGTCCATAACCATGGGTTCCAATGTACGAGATCTTGTAGCACTTACCAATGAGGCCCTATCGATTAGTATTACACAGAAGAAATCAATTATAGACACTAATATAATTAGATCTGCTCTTCATAGACAAACTTGGGATTTGCGATCCCAAGTAAGATCGGTTCAGGATCATGGGATCCTTTTCTATCAGATAGGAAGGGCCGTTGCACAAAATGTACTTCTAAGTAATTGCTCCATAGATCCTATATCTATCTATATGAAGAAGAAATCATGTAACGAAGGGGGTTCTTATTTGTACAAATGGTACTTCGAACTTGGAACGAGCATGAAGAAATTAACGATACTTCTTTATCTTTTGAGTTGTTCTGCCGGATCGGTCGCTCAAGACCTTTGGTCTCTACCCGGACCCGATGAAAAAAACGGGATTACTTCTTATGGACTCGTTGAGAATGATTCTGATCTAGTTCATGGCCTATTAGAAGTAGAAGTAGAAGGCGCTCCGGTGGGATCCTCCCGGACAGAAAAAGATTGCAGTCAGTTTGATAATGATCGAGTGACATTGCTTCTTCGGCCCGAACCAAGGAATCCCTTAGATATGATGCAAAATGGATCTTGTTCTATCGTTGATCAGAGATTTTTCTATGAACAATACGAATCGGAGTTTGAAGAAGGGGAAGGAGAAGGAGTCCTCGACCTGCAACGGATAGAGGAGGATTTATTCAATCACATAGGCAAGCGGATCATTTATGATGAAAAGGATGGGCTTCAAGAGAATGATTCGGAGTTCTTGCAGAGTCAGTACCAGACACGAGATAGATCTTCCAAAGAACAAGGCTTCTTTCGAATAAGCCAATTCGTTTGGGACCCTGCGGATCCACTCTTTTTCCTATTCAAAGATCCGCCTTTTATCTCTGTGTTTTCACATCGAGAATTCTTTGCAGATGAAGAGATGCCAAAGGGGCTTCTTACTTCCCAAACAGATCTTCCTACAACTCTATATAAACGCTGGTTTATCAAGAATACGCAAGAAAGGCACTTCGAATTGTTGATTCATCGCCAGAGATGGCTTAGAACCAACAGTTCATTATCTAATGGATTTTTCCGTTCTAATACTCCATCCGAGAGTTATCAGTATTTATCAAAGCTGTTCCTATCTAACGAAACGCTATTGGATCAAATGACAAAGACATTGTTGAAAAGATGGCTTTTCCCGGATGAAATGAAAATTGGATTCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA DUF825

Protein Analysis

628

Amino Acids

72.29

Weight (kDa)

5.49

Isoelectric Point (pI)

45.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA PF00004 17 - 182 3e-10 ATPase family associated with various cellular activities (AAA)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1347
AccBSI CCGCTC 1 cut(s) 506
AciI CCGC 4 cut(s) 504, 1381, 1514, 1544
AcoI YGGCCR 1 cut(s) 217
AcsI RAATTY 1 cut(s) 1574
AfaI GTAC 5 cut(s) 672, 861, 941, 950, 1445
AfiI CCNNNNNNNGG 4 cut(s) 42, 43, 232, 1224
AgsI TTSAA 6 cut(s) 314, 1310, 1366, 1412, 1537, 1840
AhdI GACNNNNNGTC 1 cut(s) 1036
AjnI CCWGG 2 cut(s) 150, 428
AjuI GAANNNNNNNTTGG 3 cut(s) 1611, 1643, 1854
AloI GAACNNNNNNTCC 2 cut(s) 410, 442
AluBI AGCT 4 cut(s) 238, 244, 515, 1789
AluI AGCT 4 cut(s) 238, 244, 515, 1789
Alw26I GTCTC 2 cut(s) 342, 1044
AoxI GGCC 5 cut(s) 217, 699, 843, 1114, 1214
ApoI RAATTY 1 cut(s) 1574
ArsI GACNNNNNNTTYG 2 cut(s) 320, 352
Asp700I GAANNNNTTC 2 cut(s) 146, 626
AspLEI GCGC 2 cut(s) 265, 1142
AspS9I GGNCC 6 cut(s) 648, 700, 843, 1049, 1215, 1507
AsuC2I CCSGG 3 cut(s) 1047, 1159, 1856
AsuHPI GGTGA 1 cut(s) 298
AsuII TTCGAA 4 cut(s) 318, 954, 1486, 1683
AvaII GGWCC 3 cut(s) 648, 1049, 1507
BamHI GGATCC 4 cut(s) 499, 819, 1151, 1516
BauI CACGAG 1 cut(s) 1452
BccI CCATC 4 cut(s) 1397, 1701, 1768, 1839
BceAI ACGGC 2 cut(s) 204, 830
BciT130I CCWGG 2 cut(s) 152, 430
BclI TGATCA 1 cut(s) 1270
BcnI CCSGG 3 cut(s) 1047, 1159, 1856
BcoDI GTCTC 2 cut(s) 342, 1044
BfaI CTAG 5 cut(s) 42, 101, 453, 600, 1106
BfmI CTRYAG 1 cut(s) 66
BfoI RGCGCY 1 cut(s) 1143
BfuAI ACCTGC 1 cut(s) 1347
BglI GCCNNNNNGGC 1 cut(s) 1603
BglII AGATCT 4 cut(s) 676, 755, 1460, 1624
Bme1390I CCNGG 5 cut(s) 152, 430, 1047, 1159, 1856
Bme18I GGWCC 3 cut(s) 648, 1049, 1507
BmeRI GACNNNNNGTC 1 cut(s) 1036
BmgT120I GGNCC 6 cut(s) 648, 700, 843, 1049, 1215, 1507
BmiI GGNNCC 9 cut(s) 501, 649, 664, 821, 1051, 1153, 1508, 1509, 1518
BmrFI CCNGG 5 cut(s) 152, 430, 1047, 1159, 1856
BmsI GCATC 3 cut(s) 270, 1233, 1584
BpmI CTGGAG 2 cut(s) 260, 412
Bpu14I TTCGAA 4 cut(s) 318, 954, 1486, 1683
BpuEI CTTGAG 1 cut(s) 1011
BpuMI CCSGG 3 cut(s) 1047, 1159, 1856
Bsa29I ATCGAT 1 cut(s) 707
BsaBI GATNNNNATC 2 cut(s) 1101, 1191
BsaI GGTCTC 1 cut(s) 1044
BsaJI CCNNGG 5 cut(s) 165, 403, 429, 657, 1223
BsaWI WCCGGW 1 cut(s) 1144
BsaXI ACNNNNNCTCC 4 cut(s) 410, 440, 1314, 1344
Bsc4I CCNNNNNNNGG 4 cut(s) 42, 43, 232, 1224
Bse1I ACTGG 1 cut(s) 79
Bse3DI GCAATG 2 cut(s) 339, 1202
Bse8I GATNNNNATC 2 cut(s) 1101, 1191
BseBI CCWGG 2 cut(s) 152, 430
BseCI ATCGAT 1 cut(s) 707
BseDI CCNNGG 5 cut(s) 165, 403, 429, 657, 1223
BseGI GGATG 4 cut(s) 382, 1408, 1760, 1864
BseJI GATNNNNATC 2 cut(s) 1101, 1191
BseLI CCNNNNNNNGG 4 cut(s) 42, 43, 232, 1224
BseMI GCAATG 2 cut(s) 339, 1202
BseNI ACTGG 1 cut(s) 79
BseRI GAGGAG 1 cut(s) 1367
BseX3I CGGCCG 1 cut(s) 217
Bsh1285I CGRYCG 2 cut(s) 220, 1023
BshFI GGCC 5 cut(s) 219, 701, 845, 1116, 1216
BshVI ATCGAT 1 cut(s) 707
BsiEI CGRYCG 2 cut(s) 220, 1023
BsiSI CCGG 6 cut(s) 284, 1014, 1047, 1145, 1159, 1856
BslFI GGGAC 1 cut(s) 1520
BslI CCNNNNNNNGG 4 cut(s) 42, 43, 232, 1224
BsmAI GTCTC 2 cut(s) 342, 1044
BsmFI GGGAC 1 cut(s) 1520
BsmI GAATGC 1 cut(s) 265
BsnI GGCC 5 cut(s) 219, 701, 845, 1116, 1216
Bso31I GGTCTC 1 cut(s) 1044
Bsp119I TTCGAA 4 cut(s) 318, 954, 1486, 1683
Bsp1407I TGTACA 1 cut(s) 939
Bsp19I CCATGG 1 cut(s) 657
BspACI CCGC 4 cut(s) 504, 1381, 1514, 1544
BspANI GGCC 5 cut(s) 219, 701, 845, 1116, 1216
BspDI ATCGAT 1 cut(s) 707
BspHI TCATGA 1 cut(s) 367
BspLI GGNNCC 9 cut(s) 501, 649, 664, 821, 1051, 1153, 1508, 1509, 1518
BspMI ACCTGC 1 cut(s) 1347
BspQI GCTCTTC 1 cut(s) 768
BspT104I TTCGAA 4 cut(s) 318, 954, 1486, 1683
BspTNI GGTCTC 1 cut(s) 1044
BsrBI CCGCTC 1 cut(s) 506
BsrDI GCAATG 2 cut(s) 339, 1202
BsrGI TGTACA 1 cut(s) 939
BsrI ACTGG 1 cut(s) 79
BssECI CCNNGG 5 cut(s) 165, 403, 429, 657, 1223
BssSI CACGAG 1 cut(s) 1452
BssT1I CCWWGG 3 cut(s) 165, 657, 1223
Bst2BI CACGAG 1 cut(s) 1452
Bst2UI CCWGG 2 cut(s) 152, 430
Bst4CI ACNGT 2 cut(s) 133, 1724
Bst6I CTCTTC 2 cut(s) 768, 1584
BstAUI TGTACA 1 cut(s) 939
BstBI TTCGAA 4 cut(s) 318, 954, 1486, 1683
BstC8I GCNNGC 1 cut(s) 1379
BstDEI CTNAG 3 cut(s) 866, 1234, 1712
BstDSI CCRYGG 1 cut(s) 657
BstF5I GGATG 4 cut(s) 382, 1408, 1760, 1864
BstH2I RGCGCY 1 cut(s) 1143
BstHHI GCGC 2 cut(s) 265, 1142
BstMAI GTCTC 2 cut(s) 342, 1044
BstMCI CGRYCG 2 cut(s) 220, 1023
BstMWI GCNNNNNNNGC 4 cut(s) 512, 1213, 1603, 1675
BstNI CCWGG 2 cut(s) 152, 430
BstNSI RCATGY 1 cut(s) 537
BstSCI CCNGG 5 cut(s) 150, 428, 1045, 1157, 1854
BstSFI CTRYAG 1 cut(s) 66
BstXI CCANNNNNNTGG 2 cut(s) 496, 658
BstZI CGGCCG 1 cut(s) 217
Bsu15I ATCGAT 1 cut(s) 707
BsuRI GGCC 5 cut(s) 219, 701, 845, 1116, 1216
BsuTUI ATCGAT 1 cut(s) 707
BtgI CCRYGG 1 cut(s) 657
BtgZI GCGATG 1 cut(s) 1682
BtsCI GGATG 4 cut(s) 382, 1408, 1760, 1864
BveI ACCTGC 1 cut(s) 1347
Cac8I GCNNGC 1 cut(s) 1379
CciI TCATGA 1 cut(s) 367
CfoI GCGC 2 cut(s) 265, 1142
Cfr13I GGNCC 6 cut(s) 648, 700, 843, 1049, 1215, 1507
ClaI ATCGAT 1 cut(s) 707
Csp6I GTAC 5 cut(s) 671, 860, 940, 949, 1444
CviAII CATG 8 cut(s) 368, 534, 658, 815, 915, 970, 1112, 1879
CviQI GTAC 5 cut(s) 671, 860, 940, 949, 1444
DdeI CTNAG 3 cut(s) 866, 1234, 1712
DriI GACNNNNNGTC 1 cut(s) 1036
EaeI YGGCCR 1 cut(s) 217
EagI CGGCCG 1 cut(s) 217
Eam1104I CTCTTC 2 cut(s) 768, 1584
Eam1105I GACNNNNNGTC 1 cut(s) 1036
EarI CTCTTC 2 cut(s) 768, 1584
EciI GGCGGA 1 cut(s) 1533
EclXI CGGCCG 1 cut(s) 217
Eco130I CCWWGG 3 cut(s) 165, 657, 1223
Eco31I GGTCTC 1 cut(s) 1044
Eco32I GATATC 1 cut(s) 214
Eco47I GGWCC 3 cut(s) 648, 1049, 1507
Eco52I CGGCCG 1 cut(s) 217
EcoO109I RGGNCCY 2 cut(s) 700, 1507
EcoRI GAATTC 1 cut(s) 1574
EcoRII CCWGG 2 cut(s) 150, 428
EcoRV GATATC 1 cut(s) 214
EcoT14I CCWWGG 3 cut(s) 165, 657, 1223
EcoT22I ATGCAT 1 cut(s) 539
ErhI CCWWGG 3 cut(s) 165, 657, 1223
FaeI CATG 8 cut(s) 371, 537, 661, 818, 918, 973, 1115, 1882
FaqI GGGAC 1 cut(s) 1520
FatI CATG 8 cut(s) 367, 533, 657, 814, 914, 969, 1111, 1878
FauI CCCGC 1 cut(s) 511
FbaI TGATCA 1 cut(s) 1270
FokI GGATG 4 cut(s) 389, 1415, 1747, 1871
FspBI CTAG 5 cut(s) 42, 101, 453, 600, 1106
GlaI GCGC 2 cut(s) 264, 1141
GsuI CTGGAG 2 cut(s) 260, 412
HaeII RGCGCY 1 cut(s) 1143
HaeIII GGCC 5 cut(s) 219, 701, 845, 1116, 1216
HapII CCGG 6 cut(s) 284, 1014, 1047, 1145, 1159, 1856
HhaI GCGC 2 cut(s) 265, 1142
Hin1II CATG 8 cut(s) 371, 537, 661, 818, 918, 973, 1115, 1882
Hin6I GCGC 2 cut(s) 263, 1140
HinP1I GCGC 2 cut(s) 263, 1140
HpaII CCGG 6 cut(s) 284, 1014, 1047, 1145, 1159, 1856
HphI GGTGA 1 cut(s) 298
Hpy166II GTNNAC 1 cut(s) 418
Hpy188I TCNGA 8 cut(s) 141, 519, 834, 1102, 1275, 1303, 1426, 1765
Hpy188III TCNNGA 7 cut(s) 368, 374, 809, 1028, 1412, 1571, 1660
Hpy8I GTNNAC 1 cut(s) 418
HpyAV CCTTC 8 cut(s) 320, 543, 834, 917, 1130, 1307, 1313, 1319
HpyCH4III ACNGT 2 cut(s) 133, 1724
HpyCH4V TGCA 8 cut(s) 345, 537, 851, 1176, 1246, 1342, 1435, 1583
HpyF10VI GCNNNNNNNGC 4 cut(s) 512, 1213, 1603, 1675
HpyF3I CTNAG 3 cut(s) 866, 1234, 1712
Hsp92II CATG 8 cut(s) 371, 537, 661, 818, 918, 973, 1115, 1882
HspAI GCGC 2 cut(s) 263, 1140
KflI GGGWCCC 1 cut(s) 1507
Ksp22I TGATCA 1 cut(s) 1270
LguI GCTCTTC 1 cut(s) 768
LmnI GCTCC 6 cut(s) 24, 235, 241, 520, 881, 1147
LweI GCATC 3 cut(s) 270, 1233, 1584
MaeI CTAG 5 cut(s) 42, 101, 453, 600, 1106
MaeIII GTNAC 5 cut(s) 188, 206, 221, 917, 1198
MbiI CCGCTC 1 cut(s) 506
MlyI GAGTC 5 cut(s) 395, 472, 1077, 1338, 1447
MnlI CCTC 7 cut(s) 47, 413, 691, 1165, 1343, 1345, 1348
Mph1103I ATGCAT 1 cut(s) 539
MroXI GAANNNNTTC 2 cut(s) 146, 626
MseI TTAA 3 cut(s) 527, 540, 980
MslI CAYNNNNRTG 1 cut(s) 656
MspI CCGG 6 cut(s) 284, 1014, 1047, 1145, 1159, 1856
MspR9I CCNGG 5 cut(s) 152, 430, 1047, 1159, 1856
Mva1269I GAATGC 1 cut(s) 265
MvaI CCWGG 2 cut(s) 152, 430
MwoI GCNNNNNNNGC 4 cut(s) 512, 1213, 1603, 1675
NciI CCSGG 3 cut(s) 1047, 1159, 1856
NcoI CCATGG 1 cut(s) 657
NlaIII CATG 8 cut(s) 371, 537, 661, 818, 918, 973, 1115, 1882
NlaIV GGNNCC 9 cut(s) 501, 649, 664, 821, 1051, 1153, 1508, 1509, 1518
NmuCI GTSAC 4 cut(s) 188, 206, 221, 1198
NsiI ATGCAT 1 cut(s) 539
NspI RCATGY 1 cut(s) 537
NspV TTCGAA 4 cut(s) 318, 954, 1486, 1683
PagI TCATGA 1 cut(s) 367
PciSI GCTCTTC 1 cut(s) 768
PctI GAATGC 1 cut(s) 265
PdmI GAANNNNTTC 2 cut(s) 146, 626
PfeI GAWTC 8 cut(s) 355, 642, 1097, 1228, 1298, 1421, 1693, 1875
PfoI TCCNGGA 3 cut(s) 150, 1157, 1854
PleI GAGTC 5 cut(s) 394, 472, 1077, 1337, 1446
PpsI GAGTC 5 cut(s) 394, 472, 1077, 1337, 1446
PpuMI RGGWCCY 1 cut(s) 1507
Psp5II RGGWCCY 1 cut(s) 1507
Psp6I CCWGG 2 cut(s) 150, 428
PspGI CCWGG 2 cut(s) 150, 428
PspN4I GGNNCC 9 cut(s) 501, 649, 664, 821, 1051, 1153, 1508, 1509, 1518
PspPI GGNCC 6 cut(s) 648, 700, 843, 1049, 1215, 1507
PspPPI RGGWCCY 1 cut(s) 1507
PsrI GAACNNNNNNTAC 2 cut(s) 789, 821
RsaI GTAC 5 cut(s) 672, 861, 941, 950, 1445
RsaNI GTAC 5 cut(s) 671, 860, 940, 949, 1444
RseI CAYNNNNRTG 1 cut(s) 656
SapI GCTCTTC 1 cut(s) 768
SaqAI TTAA 3 cut(s) 527, 540, 980
Sau96I GGNCC 6 cut(s) 648, 700, 843, 1049, 1215, 1507
SchI GAGTC 5 cut(s) 395, 472, 1077, 1338, 1447
ScrFI CCNGG 5 cut(s) 152, 430, 1047, 1159, 1856
SetI ASST 9 cut(s) 64, 102, 228, 240, 246, 517, 1035, 1341, 1791
SfaNI GCATC 3 cut(s) 270, 1233, 1584
SfcI CTRYAG 1 cut(s) 66
SfuI TTCGAA 4 cut(s) 318, 954, 1486, 1683
SinI GGWCC 3 cut(s) 648, 1049, 1507
SmiMI CAYNNNNRTG 1 cut(s) 656
SmlI CTYRAG 1 cut(s) 1026
SmoI CTYRAG 1 cut(s) 1026
SsiI CCGC 4 cut(s) 504, 1381, 1514, 1544
SspI AATATT 1 cut(s) 460
SspMI CTAG 5 cut(s) 42, 101, 453, 600, 1106
StyD4I CCNGG 5 cut(s) 150, 428, 1045, 1157, 1854
StyI CCWWGG 3 cut(s) 165, 657, 1223
TaaI ACNGT 2 cut(s) 133, 1724
TaqII GACCGA 2 cut(s) 309, 1009
TatI WGTACW 2 cut(s) 859, 939
TfiI GAWTC 8 cut(s) 355, 642, 1097, 1228, 1298, 1421, 1693, 1875
Tru1I TTAA 3 cut(s) 527, 540, 980
Tru9I TTAA 3 cut(s) 527, 540, 980
TseFI GTSAC 4 cut(s) 188, 206, 221, 1198
Tsp45I GTSAC 4 cut(s) 188, 206, 221, 1198
TspGWI ACGGA 4 cut(s) 11, 248, 1360, 1736
VpaK11BI GGWCC 3 cut(s) 648, 1049, 1507
XapI RAATTY 1 cut(s) 1574
XceI RCATGY 1 cut(s) 537
XmnI GAANNNNTTC 2 cut(s) 146, 626
XspI CTAG 5 cut(s) 42, 101, 453, 600, 1106
Zsp2I ATGCAT 1 cut(s) 539
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.