Rh2CG158500

function. Its presence in a non-photosynthetic plant (Epifagus virginiana) and experiments in tobacco indicate that it has an essential function which is probably not related to photosynthesis

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0004273
Physical Location & Seq
Reverse (-)
13826586 .. 13827668
1083 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG158500.1

Sequence Viewer

Length: 825 bp
ATGAATTTTGAGAATGATTCTGATCTAGTTCATGGCCTATTAGAAGTAGAAGTAGAAGGCTCTCTGGTGGGATCCTCCAAGACAGAAAAAGATTGTAGTAAGTTTGATAATGATCGAGTGACATTGCTTCTTCGGCCCGAACCAAGGAATCCCTTAGATATGATGCAAAATGGATCTTGTTCTACCATTGATAAGAGATTTTTCTCTGAACAATACGAATCGGAGTTTGAAGAAGGGGAAGGAGAAGGAGTCCTCGACCTACAACGGATAGAGGAGGATTTATTCAATCACATAGTTTGGGCTCCTAGAATATGGCGCCCTTGGGGCTTTCTATTTGATTGTATCGAAAGGCCCAATGAAATGGGATTTCCCTATTGGGTCAGGTCATTTCAGGGTAAGCGGATCATTTATGATGAAAAGGATGGGCTTCAAGAGAATGATTCGGAGTTCTTGCAGAGTCAGTACCAGACACGAGATAGATCTTCCAAAGAACAAGGCTTCTTTCGAATAAGCCAATTAGTTTGGGATCTTGCGGATCCATTCTTTTTTCTATTCAAAGATCCGCCTTTTATCTCTGTGTTTTCACATCGAGAATTCTTTGCAGATGAAGAGATGCCAAAGAGGCTTCTTACTTTCCAAACAGATCTTCCTACAACTCTATATAAACGCTGGTTTATCAAGAATACACAAGAAAGGCACTTCGAATTGTTGATTCATCGCCAGAGATGGCTTAGAACCAACAGTTCATTATCTAATGGATTTTTCTGTTCTAATACTCCATCCGAGAGTTATAAGTATTTATCAAAGCTGTTCCTATCTAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA DUF825

Protein Analysis

274

Amino Acids

32.71

Weight (kDa)

4.96

Isoelectric Point (pI)

54.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 792
AccB1I GGYRCC 1 cut(s) 315
AciI CCGC 3 cut(s) 400, 533, 563
AclWI GGATC 8 cut(s) 66, 79, 181, 410, 530, 534, 543, 554
AcsI RAATTY 2 cut(s) 4, 593
AcyI GRCGYC 1 cut(s) 316
AfaI GTAC 1 cut(s) 464
AfiI CCNNNNNNNGG 1 cut(s) 144
AgsI TTSAA 4 cut(s) 230, 286, 431, 556
AjuI GAANNNNNNNTTGG 2 cut(s) 630, 662
AluBI AGCT 1 cut(s) 808
AluI AGCT 1 cut(s) 808
AlwI GGATC 8 cut(s) 66, 79, 181, 410, 530, 534, 543, 554
AoxI GGCC 3 cut(s) 34, 134, 350
ApoI RAATTY 2 cut(s) 4, 593
AspLEI GCGC 1 cut(s) 318
AspS9I GGNCC 2 cut(s) 135, 351
AsuII TTCGAA 2 cut(s) 505, 702
BamHI GGATCC 2 cut(s) 71, 535
BanI GGYRCC 1 cut(s) 315
BanII GRGCYC 1 cut(s) 304
BauI CACGAG 1 cut(s) 471
BccI CCATC 3 cut(s) 416, 720, 787
BfaI CTAG 2 cut(s) 26, 306
BfoI RGCGCY 1 cut(s) 319
BglI GCCNNNNNGGC 2 cut(s) 324, 622
BglII AGATCT 2 cut(s) 479, 643
BmgT120I GGNCC 2 cut(s) 135, 351
BmiI GGNNCC 4 cut(s) 73, 303, 317, 537
BmsI GCATC 2 cut(s) 153, 603
Bpu14I TTCGAA 2 cut(s) 505, 702
BsaBI GATNNNNATC 2 cut(s) 21, 111
BsaHI GRCGYC 1 cut(s) 316
BsaJI CCNNGG 2 cut(s) 143, 320
BsaXI ACNNNNNCTCC 2 cut(s) 234, 264
Bsc4I CCNNNNNNNGG 1 cut(s) 144
Bse3DI GCAATG 1 cut(s) 122
Bse8I GATNNNNATC 2 cut(s) 21, 111
BseDI CCNNGG 2 cut(s) 143, 320
BseGI GGATG 2 cut(s) 427, 779
BseJI GATNNNNATC 2 cut(s) 21, 111
BseLI CCNNNNNNNGG 1 cut(s) 144
BseMI GCAATG 1 cut(s) 122
BseRI GAGGAG 1 cut(s) 287
BshFI GGCC 3 cut(s) 36, 136, 352
BshNI GGYRCC 1 cut(s) 315
BslI CCNNNNNNNGG 1 cut(s) 144
BsnI GGCC 3 cut(s) 36, 136, 352
Bsp119I TTCGAA 2 cut(s) 505, 702
Bsp1286I GDGCHC 1 cut(s) 304
BspACI CCGC 3 cut(s) 400, 533, 563
BspANI GGCC 3 cut(s) 36, 136, 352
BspLI GGNNCC 4 cut(s) 73, 303, 317, 537
BspPI GGATC 8 cut(s) 66, 79, 181, 410, 530, 534, 543, 554
BspT104I TTCGAA 2 cut(s) 505, 702
BspT107I GGYRCC 1 cut(s) 315
BsrDI GCAATG 1 cut(s) 122
BssECI CCNNGG 2 cut(s) 143, 320
BssNI GRCGYC 1 cut(s) 316
BssSI CACGAG 1 cut(s) 471
BssT1I CCWWGG 2 cut(s) 143, 320
Bst2BI CACGAG 1 cut(s) 471
Bst4CI ACNGT 1 cut(s) 743
Bst6I CTCTTC 1 cut(s) 603
BstACI GRCGYC 1 cut(s) 316
BstBI TTCGAA 2 cut(s) 505, 702
BstDEI CTNAG 2 cut(s) 154, 731
BstF5I GGATG 2 cut(s) 427, 779
BstH2I RGCGCY 1 cut(s) 319
BstHHI GCGC 1 cut(s) 318
BstMWI GCNNNNNNNGC 3 cut(s) 133, 324, 622
BstX2I RGATCY 7 cut(s) 71, 173, 479, 526, 535, 559, 643
BstXI CCANNNNNNTGG 1 cut(s) 361
BstYI RGATCY 7 cut(s) 71, 173, 479, 526, 535, 559, 643
BsuRI GGCC 3 cut(s) 36, 136, 352
BtgZI GCGATG 1 cut(s) 701
BtsCI GGATG 2 cut(s) 427, 779
CfoI GCGC 1 cut(s) 318
Cfr13I GGNCC 2 cut(s) 135, 351
Csp6I GTAC 1 cut(s) 463
CviAII CATG 1 cut(s) 32
CviQI GTAC 1 cut(s) 463
DdeI CTNAG 2 cut(s) 154, 731
DinI GGCGCC 1 cut(s) 317
Eam1104I CTCTTC 1 cut(s) 603
EarI CTCTTC 1 cut(s) 603
EciI GGCGGA 1 cut(s) 552
Eco130I CCWWGG 2 cut(s) 143, 320
Eco24I GRGCYC 1 cut(s) 304
EcoRI GAATTC 1 cut(s) 593
EcoT14I CCWWGG 2 cut(s) 143, 320
EcoT38I GRGCYC 1 cut(s) 304
EgeI GGCGCC 1 cut(s) 317
EheI GGCGCC 1 cut(s) 317
ErhI CCWWGG 2 cut(s) 143, 320
FaeI CATG 1 cut(s) 35
FaiI YATR 8 cut(s) 33, 161, 293, 313, 411, 661, 663, 792
FatI CATG 1 cut(s) 31
FokI GGATG 2 cut(s) 434, 766
FriOI GRGCYC 1 cut(s) 304
FspBI CTAG 2 cut(s) 26, 306
GlaI GCGC 1 cut(s) 317
HaeII RGCGCY 1 cut(s) 319
HaeIII GGCC 3 cut(s) 36, 136, 352
HhaI GCGC 1 cut(s) 318
Hin1I GRCGYC 1 cut(s) 316
Hin1II CATG 1 cut(s) 35
Hin6I GCGC 1 cut(s) 316
HinP1I GCGC 1 cut(s) 316
HinfI GANTC 7 cut(s) 17, 148, 218, 249, 440, 457, 712
Hpy188I TCNGA 5 cut(s) 22, 208, 223, 445, 784
Hpy188III TCNNGA 3 cut(s) 431, 590, 679
HpyAV CCTTC 4 cut(s) 50, 227, 233, 239
HpyCH4III ACNGT 1 cut(s) 743
HpyCH4V TGCA 3 cut(s) 166, 454, 602
HpyF10VI GCNNNNNNNGC 3 cut(s) 133, 324, 622
HpyF3I CTNAG 2 cut(s) 154, 731
Hsp92I GRCGYC 1 cut(s) 316
Hsp92II CATG 1 cut(s) 35
HspAI GCGC 1 cut(s) 316
KasI GGCGCC 1 cut(s) 315
LmnI GCTCC 1 cut(s) 307
LpnPI CCDG 6 cut(s) 50, 367, 377, 479, 655, 734
LweI GCATC 2 cut(s) 153, 603
MaeI CTAG 2 cut(s) 26, 306
MaeIII GTNAC 1 cut(s) 118
MboII GAAGA 5 cut(s) 122, 242, 474, 620, 638
MflI RGATCY 7 cut(s) 71, 173, 479, 526, 535, 559, 643
MhlI GDGCHC 1 cut(s) 304
MluCI AATT 4 cut(s) 4, 515, 593, 704
Mly113I GGCGCC 1 cut(s) 316
MlyI GAGTC 2 cut(s) 258, 466
MnlI CCTC 5 cut(s) 85, 263, 265, 268, 615
MwoI GCNNNNNNNGC 3 cut(s) 133, 324, 622
NarI GGCGCC 1 cut(s) 316
NlaIII CATG 1 cut(s) 35
NlaIV GGNNCC 4 cut(s) 73, 303, 317, 537
NmuCI GTSAC 1 cut(s) 118
NspV TTCGAA 2 cut(s) 505, 702
PfeI GAWTC 5 cut(s) 17, 148, 218, 440, 712
PleI GAGTC 2 cut(s) 257, 465
PluTI GGCGCC 1 cut(s) 319
PpsI GAGTC 2 cut(s) 257, 465
PsiI TTATAA 1 cut(s) 792
PspN4I GGNNCC 4 cut(s) 73, 303, 317, 537
PspPI GGNCC 2 cut(s) 135, 351
PsuI RGATCY 7 cut(s) 71, 173, 479, 526, 535, 559, 643
RsaI GTAC 1 cut(s) 464
RsaNI GTAC 1 cut(s) 463
Sau96I GGNCC 2 cut(s) 135, 351
SchI GAGTC 2 cut(s) 258, 466
SduI GDGCHC 1 cut(s) 304
SetI ASST 3 cut(s) 261, 386, 810
SfaNI GCATC 2 cut(s) 153, 603
SfoI GGCGCC 1 cut(s) 317
SfuI TTCGAA 2 cut(s) 505, 702
Sse9I AATT 4 cut(s) 4, 515, 593, 704
SsiI CCGC 3 cut(s) 400, 533, 563
SspDI GGCGCC 1 cut(s) 315
SspMI CTAG 2 cut(s) 26, 306
StyI CCWWGG 2 cut(s) 143, 320
TaaI ACNGT 1 cut(s) 743
TaqI TCGA 6 cut(s) 115, 255, 345, 505, 589, 702
TasI AATT 4 cut(s) 4, 515, 593, 704
TfiI GAWTC 5 cut(s) 17, 148, 218, 440, 712
TseFI GTSAC 1 cut(s) 118
Tsp45I GTSAC 1 cut(s) 118
TspDTI ATGAA 7 cut(s) 17, 20, 372, 429, 621, 704, 735
TspGWI ACGGA 1 cut(s) 280
XapI RAATTY 2 cut(s) 4, 593
XspI CTAG 2 cut(s) 26, 306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.