RLG00000002780

function. Its presence in a non-photosynthetic plant (Epifagus virginiana) and experiments in tobacco indicate that it has an essential function which is probably not related to photosynthesis

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0004273
Physical Location & Seq
Forward (+)
39608130 .. 39608768
639 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002780

Sequence Viewer

Length: 639 bp
ATGGTCGAGAGAAAAAATCTCTATTTGATGGCGCTTCTTCCTATACCTATGAATTTCATTGGACCTATAAATGATACAGTGGAAGAATCTTTCGGGTCTTCCAATATCAATAGGTTGATTGTTTCGCTCCTGTATGTTCCAAAAGGAAAAAAGATCTCTGAGAGCTGTTTCTTGGATCCGAAAGAGAGTGCTTGGGTTCTCCCAATAACTAAAAAGTGCATCATGCCTGAATCTAACTGGGGTTCGCGGTGGTGGATGAACTGGATCGGAAAAAAGAGGGATTCTAGTTGTAAGCTATCTAATGAAACCGTCGCTGGAATTGAGATCTCATTCATAGAGAAAGATATCAAATATCCGGAGTTTCTTTTTGTATATTATATGGATGATCCGATTAGCAAGGACCATGATTGGGAATTGTTTAATCGTCTTTCTCTAAGGAAGAGGCGAAACATACTCAACTTGAATTCGGGACAGCTATTCTTAATCTTAGTGAAAGACTGGATTTGTTATCTCATGTTTGCTTTTCATGAAAAAATACCAATTGAAGCGGAGGTTTTCTTCAAACAACAAGGAACTGGGTCAACTATTCAATCAAATGAAATTGAGCATGTTTCCCATCTCTTCTCGAGAAACAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF825

Protein Analysis

213

Amino Acids

24.85

Weight (kDa)

8.27

Isoelectric Point (pI)

56.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ycf2 PF05695 1 - 212 2.9e-129 Ycf2 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 247
AccIII TCCGGA 1 cut(s) 355
AciI CCGC 2 cut(s) 247, 548
AclWI GGATC 4 cut(s) 170, 183, 272, 380
AcsI RAATTY 2 cut(s) 52, 463
AfiI CCNNNNNNNGG 1 cut(s) 409
AgsI TTSAA 4 cut(s) 463, 545, 562, 590
AluBI AGCT 3 cut(s) 165, 295, 475
AluI AGCT 3 cut(s) 165, 295, 475
AlwI GGATC 4 cut(s) 170, 183, 272, 380
Ama87I CYCGRG 1 cut(s) 625
Aor13HI TCCGGA 1 cut(s) 355
ApoI RAATTY 2 cut(s) 52, 463
AspLEI GCGC 1 cut(s) 34
AspS9I GGNCC 2 cut(s) 62, 400
AvaI CYCGRG 1 cut(s) 625
AvaII GGWCC 2 cut(s) 62, 400
BamHI GGATCC 1 cut(s) 175
BbsI GAAGAC 1 cut(s) 90
BccI CCATC 2 cut(s) 22, 624
BfaI CTAG 1 cut(s) 285
BfoI RGCGCY 1 cut(s) 35
BglII AGATCT 2 cut(s) 153, 324
Bme18I GGWCC 2 cut(s) 62, 400
BmeT110I CYCGRG 1 cut(s) 625
BmgT120I GGNCC 2 cut(s) 62, 400
BmiI GGNNCC 1 cut(s) 177
BmrI ACTGGG 2 cut(s) 247, 585
BmsI GCATC 1 cut(s) 228
BmuI ACTGGG 2 cut(s) 247, 585
BpiI GAAGAC 1 cut(s) 90
BsaWI WCCGGW 1 cut(s) 355
Bsc4I CCNNNNNNNGG 1 cut(s) 409
Bse1I ACTGG 4 cut(s) 242, 266, 503, 580
BseAI TCCGGA 1 cut(s) 355
BseGI GGATG 2 cut(s) 261, 388
BseLI CCNNNNNNNGG 1 cut(s) 409
BseMII CTCAG 1 cut(s) 150
BseNI ACTGG 4 cut(s) 242, 266, 503, 580
Bsh1236I CGCG 1 cut(s) 247
BsiHKCI CYCGRG 1 cut(s) 625
BsiSI CCGG 1 cut(s) 356
BslFI GGGAC 1 cut(s) 483
BslI CCNNNNNNNGG 1 cut(s) 409
BsmFI GGGAC 1 cut(s) 483
BsoBI CYCGRG 1 cut(s) 625
Bsp13I TCCGGA 1 cut(s) 355
Bsp143I GATC 5 cut(s) 153, 175, 264, 324, 385
BspACI CCGC 2 cut(s) 247, 548
BspCNI CTCAG 1 cut(s) 151
BspEI TCCGGA 1 cut(s) 355
BspFNI CGCG 1 cut(s) 247
BspHI TCATGA 1 cut(s) 526
BspLI GGNNCC 1 cut(s) 177
BspPI GGATC 4 cut(s) 170, 183, 272, 380
BsrI ACTGG 4 cut(s) 242, 266, 503, 580
BssMI GATC 5 cut(s) 153, 175, 264, 324, 385
Bst4CI ACNGT 2 cut(s) 79, 310
Bst6I CTCTTC 2 cut(s) 434, 626
BstDEI CTNAG 3 cut(s) 159, 434, 487
BstF5I GGATG 2 cut(s) 261, 388
BstFNI CGCG 1 cut(s) 247
BstH2I RGCGCY 1 cut(s) 35
BstHHI GCGC 1 cut(s) 34
BstKTI GATC 5 cut(s) 156, 178, 267, 327, 388
BstMBI GATC 5 cut(s) 153, 175, 264, 324, 385
BstNSI RCATGY 1 cut(s) 611
BstUI CGCG 1 cut(s) 247
BstV2I GAAGAC 1 cut(s) 90
BstX2I RGATCY 3 cut(s) 153, 175, 324
BstYI RGATCY 3 cut(s) 153, 175, 324
BtsCI GGATG 2 cut(s) 261, 388
BtsIMutI CAGTG 1 cut(s) 84
CciI TCATGA 1 cut(s) 526
CfoI GCGC 1 cut(s) 34
Cfr13I GGNCC 2 cut(s) 62, 400
CviAII CATG 5 cut(s) 223, 404, 514, 527, 608
CviJI RGCY 3 cut(s) 165, 295, 475
CviKI_1 RGCY 3 cut(s) 165, 295, 475
DdeI CTNAG 3 cut(s) 159, 434, 487
DpnI GATC 5 cut(s) 155, 177, 266, 326, 387
DpnII GATC 5 cut(s) 153, 175, 264, 324, 385
Eam1104I CTCTTC 2 cut(s) 434, 626
EarI CTCTTC 2 cut(s) 434, 626
Eco32I GATATC 1 cut(s) 346
Eco47I GGWCC 2 cut(s) 62, 400
Eco88I CYCGRG 1 cut(s) 625
EcoRI GAATTC 1 cut(s) 463
EcoRV GATATC 1 cut(s) 346
FaeI CATG 5 cut(s) 226, 407, 517, 530, 611
FaqI GGGAC 1 cut(s) 483
FatI CATG 5 cut(s) 222, 403, 513, 526, 607
FokI GGATG 2 cut(s) 268, 395
FspBI CTAG 1 cut(s) 285
GlaI GCGC 1 cut(s) 33
HaeII RGCGCY 1 cut(s) 35
HapII CCGG 1 cut(s) 356
HhaI GCGC 1 cut(s) 34
Hin1II CATG 5 cut(s) 226, 407, 517, 530, 611
Hin6I GCGC 1 cut(s) 32
HinP1I GCGC 1 cut(s) 32
HincII GTYRAC 1 cut(s) 582
HindII GTYRAC 1 cut(s) 582
HinfI GANTC 3 cut(s) 86, 230, 281
HpaII CCGG 1 cut(s) 356
Hpy166II GTNNAC 1 cut(s) 582
Hpy188I TCNGA 4 cut(s) 160, 180, 269, 390
Hpy188III TCNNGA 6 cut(s) 7, 356, 468, 527, 625, 627
Hpy8I GTNNAC 1 cut(s) 582
Hpy99I CGWCG 1 cut(s) 314
HpyCH4III ACNGT 2 cut(s) 79, 310
HpyCH4V TGCA 1 cut(s) 219
HpyF3I CTNAG 3 cut(s) 159, 434, 487
Hsp92II CATG 5 cut(s) 226, 407, 517, 530, 611
HspAI GCGC 1 cut(s) 32
Kpn2I TCCGGA 1 cut(s) 355
Kzo9I GATC 5 cut(s) 153, 175, 264, 324, 385
LmnI GCTCC 1 cut(s) 132
LpnPI CCDG 8 cut(s) 143, 223, 240, 247, 300, 369, 484, 561
LweI GCATC 1 cut(s) 228
MaeI CTAG 1 cut(s) 285
MalI GATC 5 cut(s) 155, 177, 266, 326, 387
MboI GATC 5 cut(s) 153, 175, 264, 324, 385
MboII GAAGA 6 cut(s) 29, 90, 95, 451, 550, 613
MfeI CAATTG 1 cut(s) 540
MflI RGATCY 3 cut(s) 153, 175, 324
MluCI AATT 6 cut(s) 52, 318, 413, 463, 540, 600
MnlI CCTC 3 cut(s) 270, 435, 544
MroI TCCGGA 1 cut(s) 355
MseI TTAA 2 cut(s) 420, 482
MspI CCGG 1 cut(s) 356
MunI CAATTG 1 cut(s) 540
MvnI CGCG 1 cut(s) 247
NdeII GATC 5 cut(s) 153, 175, 264, 324, 385
NlaIII CATG 5 cut(s) 226, 407, 517, 530, 611
NlaIV GGNNCC 1 cut(s) 177
NspI RCATGY 1 cut(s) 611
PaeR7I CTCGAG 1 cut(s) 625
PagI TCATGA 1 cut(s) 526
PfeI GAWTC 3 cut(s) 86, 230, 281
PspN4I GGNNCC 1 cut(s) 177
PspPI GGNCC 2 cut(s) 62, 400
PsuI RGATCY 3 cut(s) 153, 175, 324
SaqAI TTAA 2 cut(s) 420, 482
Sau3AI GATC 5 cut(s) 153, 175, 264, 324, 385
Sau96I GGNCC 2 cut(s) 62, 400
SetI ASST 7 cut(s) 49, 67, 116, 167, 297, 477, 555
SfaNI GCATC 1 cut(s) 228
Sfr274I CTCGAG 1 cut(s) 625
SinI GGWCC 2 cut(s) 62, 400
SlaI CTCGAG 1 cut(s) 625
SmlI CTYRAG 1 cut(s) 625
SmoI CTYRAG 1 cut(s) 625
Sse9I AATT 6 cut(s) 52, 318, 413, 463, 540, 600
SsiI CCGC 2 cut(s) 247, 548
SspMI CTAG 1 cut(s) 285
TaaI ACNGT 2 cut(s) 79, 310
TaqI TCGA 2 cut(s) 6, 626
TasI AATT 6 cut(s) 52, 318, 413, 463, 540, 600
TfiI GAWTC 3 cut(s) 86, 230, 281
Tru1I TTAA 2 cut(s) 420, 482
Tru9I TTAA 2 cut(s) 420, 482
TscAI CASTG 1 cut(s) 84
TspDTI ATGAA 8 cut(s) 46, 65, 272, 318, 322, 515, 543, 612
TspRI CASTG 1 cut(s) 84
VpaK11BI GGWCC 2 cut(s) 62, 400
XapI RAATTY 2 cut(s) 52, 463
XceI RCATGY 1 cut(s) 611
XhoI CTCGAG 1 cut(s) 625
XspI CTAG 1 cut(s) 285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.