Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004273

Physical Location & Seq

Genomic Coordinates Reverse (-)

19298013 .. 19298162

Gene Structure 150 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ55887

Sequence Viewer

CDS Protein Promoter (2k)

Length: 150 bp

ATGATCGGGCATACTATTGCTATCCATGATGGAAGGGAGCATTTGCCTATTTATATAACAGATCGTATGGTAGGACATAAATTGGGAGAATTTTCACCGACTCTAAATTTCCGGGGGCATGCGAAAGGTGATAATAGATCTCGGCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006996 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0015935 GO:0016043 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0032991 GO:0034622 GO:0042254 GO:0042255 GO:0042274 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0065003 GO:0070925 GO:0071826 GO:0071840 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S19

Protein Analysis

49

Amino Acids

5.61

Weight (kDa)

10.24

Isoelectric Point (pI)

38.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S19	PF00203	1 - 40	1.3e-17	Ribosomal protein S19

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0004273)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG00820
fragaria_vesca	FvH4_6g09000
malus_domestica	MD15G1364200.v1.1
prunus_persica	Prupe.4G266600_v2.0.a1
pyrus_communis	pycom16g20490 pycom16g20550
rosa_chinensis	RchiOBHm_Chr1g0329571 RchiOBHm_Chr2g0102151 RchiOBHm_Chr2g0118431 RchiOBHm_Chr2g0118441 RchiOBHm_Chr2g0118451 RchiOBHm_Chr2g0118501 RchiOBHm_Chr2g0118531 RchiOBHm_CPg0501801 RchiOBHm_CPg0501831 RchiOBHm_CPg0502611
rosa_laevigata	RLG00000000006 RLG00000000213 RLG00000000240 RLG00000000256 RLG00000002780
rosa_samantha	Rh1AG125000 Rh1BG209500 Rh1CG032300 Rh1DG236100 Rh1DG236200 Rh1DG236300 Rh2CG158500 Rh2DG300400 Rh2DG300500 Rh3BG145300
rosa_wichuraiana	Rw3G020690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	89, 106
ApoI	RAATTY	2 cut(s)	89, 106
AsuC2I	CCSGG	1 cut(s)	113
AsuHPI	GGTGA	2 cut(s)	87, 140
BccI	CCATC	1 cut(s)	23
BcnI	CCSGG	1 cut(s)	113
BglII	AGATCT	1 cut(s)	137
Bme1390I	CCNGG	1 cut(s)	113
BmrFI	CCNGG	1 cut(s)	113
BpuMI	CCSGG	1 cut(s)	113
BsaJI	CCNNGG	1 cut(s)	112
BseDI	CCNNGG	1 cut(s)	112
BsiSI	CCGG	1 cut(s)	112
Bsp143I	GATC	3 cut(s)	3, 61, 137
BssECI	CCNNGG	1 cut(s)	112
BssMI	GATC	3 cut(s)	3, 61, 137
BstC8I	GCNNGC	1 cut(s)	120
BstKTI	GATC	3 cut(s)	6, 64, 140
BstMBI	GATC	3 cut(s)	3, 61, 137
BstNSI	RCATGY	1 cut(s)	122
BstSCI	CCNGG	1 cut(s)	111
BstX2I	RGATCY	1 cut(s)	137
BstYI	RGATCY	1 cut(s)	137
Cac8I	GCNNGC	1 cut(s)	120
CviAII	CATG	2 cut(s)	26, 119
DpnI	GATC	3 cut(s)	5, 63, 139
DpnII	GATC	3 cut(s)	3, 61, 137
FaeI	CATG	2 cut(s)	29, 122
FaiI	YATR	7 cut(s)	12, 27, 54, 56, 68, 78, 120
FatI	CATG	2 cut(s)	25, 118
HapII	CCGG	1 cut(s)	112
Hin1II	CATG	2 cut(s)	29, 122
HinfI	GANTC	1 cut(s)	100
HpaII	CCGG	1 cut(s)	112
HphI	GGTGA	2 cut(s)	87, 140
HpyAV	CCTTC	1 cut(s)	27
Hsp92II	CATG	2 cut(s)	29, 122
Kzo9I	GATC	3 cut(s)	3, 61, 137
LmnI	GCTCC	1 cut(s)	37
LpnPI	CCDG	1 cut(s)	125
MalI	GATC	3 cut(s)	5, 63, 139
MboI	GATC	3 cut(s)	3, 61, 137
MflI	RGATCY	1 cut(s)	137
MluCI	AATT	3 cut(s)	80, 89, 106
MlyI	GAGTC	1 cut(s)	94
MseI	TTAA	1 cut(s)	148
MspI	CCGG	1 cut(s)	112
MspR9I	CCNGG	1 cut(s)	113
NciI	CCSGG	1 cut(s)	113
NdeII	GATC	3 cut(s)	3, 61, 137
NlaIII	CATG	2 cut(s)	29, 122
NmeAIII	GCCGAG	1 cut(s)	121
NspI	RCATGY	1 cut(s)	122
PaeI	GCATGC	1 cut(s)	122
PleI	GAGTC	1 cut(s)	94
PpsI	GAGTC	1 cut(s)	94
PsuI	RGATCY	1 cut(s)	137
SaqAI	TTAA	1 cut(s)	148
Sau3AI	GATC	3 cut(s)	3, 61, 137
SchI	GAGTC	1 cut(s)	94
ScrFI	CCNGG	1 cut(s)	113
SetI	ASST	1 cut(s)	130
SgeI	CNNG	5 cut(s)	19, 38, 124, 125, 131
SphI	GCATGC	1 cut(s)	122
Sse9I	AATT	3 cut(s)	80, 89, 106
StyD4I	CCNGG	1 cut(s)	111
TasI	AATT	3 cut(s)	80, 89, 106
Tru1I	TTAA	1 cut(s)	148
Tru9I	TTAA	1 cut(s)	148
XapI	RAATTY	2 cut(s)	89, 106
XceI	RCATGY	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.