function. Its presence in a non-photosynthetic plant (Epifagus virginiana) and experiments in tobacco indicate that it has an essential function which is probably not related to photosynthesis
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | ATCG00820 |
| fragaria_vesca | FvH4_6g09000 |
| malus_domestica | MD15G1364200.v1.1 |
| prunus_persica | Prupe.4G266600_v2.0.a1 |
| pyrus_communis | pycom16g20490 pycom16g20550 |
| rosa_chinensis | RchiOBHm_Chr1g0329571 RchiOBHm_Chr2g0102151 RchiOBHm_Chr2g0118431 RchiOBHm_Chr2g0118441 RchiOBHm_Chr2g0118451 RchiOBHm_Chr2g0118501 RchiOBHm_Chr2g0118531 RchiOBHm_CPg0501801 RchiOBHm_CPg0501831 RchiOBHm_CPg0502611 |
| rosa_laevigata | RLG00000000006 RLG00000000213 RLG00000000240 RLG00000000256 RLG00000002780 |
| rosa_samantha | Rh1AG125000 Rh1BG209500 Rh1CG032300 Rh1DG236100 Rh1DG236200 Rh1DG236300 Rh2CG158500 Rh2DG300400 Rh2DG300500 Rh3BG145300 |
| rosa_wichuraiana | Rw3G020690 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 840 |
| Acc36I | ACCTGC | 1 cut(s) | 696 |
| AccB1I | GGYRCC | 1 cut(s) | 744 |
| AciI | CCGC | 2 cut(s) | 829, 992 |
| AcsI | RAATTY | 2 cut(s) | 1022, 1325 |
| AcyI | GRCGYC | 1 cut(s) | 745 |
| AfaI | GTAC | 5 cut(s) | 15, 204, 284, 293, 893 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 567 |
| AgsI | TTSAA | 6 cut(s) | 653, 715, 860, 985, 1132, 1325 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 379 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1059, 1091 |
| AluBI | AGCT | 1 cut(s) | 1237 |
| AluI | AGCT | 1 cut(s) | 1237 |
| Alw26I | GTCTC | 1 cut(s) | 387 |
| AoxI | GGCC | 4 cut(s) | 42, 457, 557, 779 |
| ApoI | RAATTY | 2 cut(s) | 1022, 1325 |
| AspLEI | GCGC | 2 cut(s) | 485, 747 |
| AspS9I | GGNCC | 5 cut(s) | 43, 392, 558, 780, 955 |
| AsuC2I | CCSGG | 3 cut(s) | 390, 502, 1307 |
| AsuII | TTCGAA | 2 cut(s) | 297, 934 |
| AvaII | GGWCC | 2 cut(s) | 392, 955 |
| BamHI | GGATCC | 3 cut(s) | 162, 494, 964 |
| BanI | GGYRCC | 1 cut(s) | 744 |
| BanII | GRGCYC | 1 cut(s) | 733 |
| BauI | CACGAG | 1 cut(s) | 900 |
| BccI | CCATC | 3 cut(s) | 845, 1149, 1216 |
| BclI | TGATCA | 1 cut(s) | 613 |
| BcnI | CCSGG | 3 cut(s) | 390, 502, 1307 |
| BcoDI | GTCTC | 1 cut(s) | 387 |
| BfaI | CTAG | 3 cut(s) | 17, 449, 735 |
| BfoI | RGCGCY | 2 cut(s) | 486, 748 |
| BfuAI | ACCTGC | 1 cut(s) | 696 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 753, 1051 |
| BglII | AGATCT | 4 cut(s) | 19, 98, 908, 1072 |
| Bme1390I | CCNGG | 3 cut(s) | 390, 502, 1307 |
| Bme18I | GGWCC | 2 cut(s) | 392, 955 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 379 |
| BmgT120I | GGNCC | 5 cut(s) | 43, 392, 558, 780, 955 |
| BmiI | GGNNCC | 8 cut(s) | 7, 164, 496, 732, 746, 956, 957, 966 |
| BmrFI | CCNGG | 3 cut(s) | 390, 502, 1307 |
| BmsI | GCATC | 2 cut(s) | 576, 1032 |
| Bpu14I | TTCGAA | 2 cut(s) | 297, 934 |
| BpuEI | CTTGAG | 1 cut(s) | 354 |
| BpuMI | CCSGG | 3 cut(s) | 390, 502, 1307 |
| Bsa29I | ATCGAT | 1 cut(s) | 50 |
| BsaBI | GATNNNNATC | 2 cut(s) | 444, 534 |
| BsaHI | GRCGYC | 1 cut(s) | 745 |
| BsaI | GGTCTC | 1 cut(s) | 387 |
| BsaJI | CCNNGG | 2 cut(s) | 566, 749 |
| BsaWI | WCCGGW | 2 cut(s) | 356, 487 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 663, 693 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 567 |
| Bse3DI | GCAATG | 1 cut(s) | 545 |
| Bse8I | GATNNNNATC | 2 cut(s) | 444, 534 |
| BseCI | ATCGAT | 1 cut(s) | 50 |
| BseDI | CCNNGG | 2 cut(s) | 566, 749 |
| BseGI | GGATG | 3 cut(s) | 856, 1208, 1315 |
| BseJI | GATNNNNATC | 2 cut(s) | 444, 534 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 567 |
| BseMI | GCAATG | 1 cut(s) | 545 |
| BseRI | GAGGAG | 1 cut(s) | 716 |
| Bsh1285I | CGRYCG | 1 cut(s) | 366 |
| BshFI | GGCC | 4 cut(s) | 44, 459, 559, 781 |
| BshNI | GGYRCC | 1 cut(s) | 744 |
| BshVI | ATCGAT | 1 cut(s) | 50 |
| BsiEI | CGRYCG | 1 cut(s) | 366 |
| BsiSI | CCGG | 5 cut(s) | 357, 390, 488, 502, 1307 |
| BslFI | GGGAC | 1 cut(s) | 968 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 567 |
| BsmAI | GTCTC | 1 cut(s) | 387 |
| BsmFI | GGGAC | 1 cut(s) | 968 |
| BsnI | GGCC | 4 cut(s) | 44, 459, 559, 781 |
| Bso31I | GGTCTC | 1 cut(s) | 387 |
| Bsp119I | TTCGAA | 2 cut(s) | 297, 934 |
| Bsp1286I | GDGCHC | 1 cut(s) | 733 |
| Bsp1407I | TGTACA | 1 cut(s) | 282 |
| BspACI | CCGC | 2 cut(s) | 829, 992 |
| BspANI | GGCC | 4 cut(s) | 44, 459, 559, 781 |
| BspDI | ATCGAT | 1 cut(s) | 50 |
| BspLI | GGNNCC | 8 cut(s) | 7, 164, 496, 732, 746, 956, 957, 966 |
| BspMI | ACCTGC | 1 cut(s) | 696 |
| BspQI | GCTCTTC | 1 cut(s) | 111 |
| BspT104I | TTCGAA | 2 cut(s) | 297, 934 |
| BspT107I | GGYRCC | 1 cut(s) | 744 |
| BspTNI | GGTCTC | 1 cut(s) | 387 |
| BsrDI | GCAATG | 1 cut(s) | 545 |
| BsrGI | TGTACA | 1 cut(s) | 282 |
| BssECI | CCNNGG | 2 cut(s) | 566, 749 |
| BssNI | GRCGYC | 1 cut(s) | 745 |
| BssSI | CACGAG | 1 cut(s) | 900 |
| BssT1I | CCWWGG | 2 cut(s) | 566, 749 |
| Bst2BI | CACGAG | 1 cut(s) | 900 |
| Bst4CI | ACNGT | 1 cut(s) | 1172 |
| Bst6I | CTCTTC | 2 cut(s) | 111, 1032 |
| BstACI | GRCGYC | 1 cut(s) | 745 |
| BstAUI | TGTACA | 1 cut(s) | 282 |
| BstBI | TTCGAA | 2 cut(s) | 297, 934 |
| BstC8I | GCNNGC | 1 cut(s) | 827 |
| BstDEI | CTNAG | 3 cut(s) | 209, 577, 1160 |
| BstF5I | GGATG | 3 cut(s) | 856, 1208, 1315 |
| BstH2I | RGCGCY | 2 cut(s) | 486, 748 |
| BstHHI | GCGC | 2 cut(s) | 485, 747 |
| BstMAI | GTCTC | 1 cut(s) | 387 |
| BstMCI | CGRYCG | 1 cut(s) | 366 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 556, 753, 1051, 1123 |
| BstSCI | CCNGG | 3 cut(s) | 388, 500, 1305 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 790 |
| Bsu15I | ATCGAT | 1 cut(s) | 50 |
| BsuRI | GGCC | 4 cut(s) | 44, 459, 559, 781 |
| BsuTUI | ATCGAT | 1 cut(s) | 50 |
| BtgZI | GCGATG | 1 cut(s) | 1130 |
| BtsCI | GGATG | 3 cut(s) | 856, 1208, 1315 |
| BveI | ACCTGC | 1 cut(s) | 696 |
| Cac8I | GCNNGC | 1 cut(s) | 827 |
| CfoI | GCGC | 2 cut(s) | 485, 747 |
| Cfr13I | GGNCC | 5 cut(s) | 43, 392, 558, 780, 955 |
| ClaI | ATCGAT | 1 cut(s) | 50 |
| Csp6I | GTAC | 5 cut(s) | 14, 203, 283, 292, 892 |
| CviAII | CATG | 5 cut(s) | 158, 258, 313, 455, 1330 |
| CviQI | GTAC | 5 cut(s) | 14, 203, 283, 292, 892 |
| DdeI | CTNAG | 3 cut(s) | 209, 577, 1160 |
| DinI | GGCGCC | 1 cut(s) | 746 |
| DriI | GACNNNNNGTC | 1 cut(s) | 379 |
| Eam1104I | CTCTTC | 2 cut(s) | 111, 1032 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 379 |
| EarI | CTCTTC | 2 cut(s) | 111, 1032 |
| EciI | GGCGGA | 1 cut(s) | 981 |
| Eco130I | CCWWGG | 2 cut(s) | 566, 749 |
| Eco24I | GRGCYC | 1 cut(s) | 733 |
| Eco31I | GGTCTC | 1 cut(s) | 387 |
| Eco47I | GGWCC | 2 cut(s) | 392, 955 |
| EcoO109I | RGGNCCY | 2 cut(s) | 43, 955 |
| EcoRI | GAATTC | 2 cut(s) | 1022, 1325 |
| EcoT14I | CCWWGG | 2 cut(s) | 566, 749 |
| EcoT38I | GRGCYC | 1 cut(s) | 733 |
| EgeI | GGCGCC | 1 cut(s) | 746 |
| EheI | GGCGCC | 1 cut(s) | 746 |
| ErhI | CCWWGG | 2 cut(s) | 566, 749 |
| FaeI | CATG | 5 cut(s) | 161, 261, 316, 458, 1333 |
| FaqI | GGGAC | 1 cut(s) | 968 |
| FatI | CATG | 5 cut(s) | 157, 257, 312, 454, 1329 |
| FbaI | TGATCA | 1 cut(s) | 613 |
| FokI | GGATG | 3 cut(s) | 863, 1195, 1322 |
| FriOI | GRGCYC | 1 cut(s) | 733 |
| FspBI | CTAG | 3 cut(s) | 17, 449, 735 |
| GlaI | GCGC | 2 cut(s) | 484, 746 |
| HaeII | RGCGCY | 2 cut(s) | 486, 748 |
| HaeIII | GGCC | 4 cut(s) | 44, 459, 559, 781 |
| HapII | CCGG | 5 cut(s) | 357, 390, 488, 502, 1307 |
| HhaI | GCGC | 2 cut(s) | 485, 747 |
| Hin1I | GRCGYC | 1 cut(s) | 745 |
| Hin1II | CATG | 5 cut(s) | 161, 261, 316, 458, 1333 |
| Hin6I | GCGC | 2 cut(s) | 483, 745 |
| HinP1I | GCGC | 2 cut(s) | 483, 745 |
| HinfI | GANTC | 8 cut(s) | 426, 440, 571, 641, 678, 869, 886, 1141 |
| HpaII | CCGG | 5 cut(s) | 357, 390, 488, 502, 1307 |
| Hpy188I | TCNGA | 6 cut(s) | 177, 445, 618, 646, 874, 1213 |
| Hpy188III | TCNNGA | 5 cut(s) | 152, 371, 860, 1019, 1108 |
| HpyAV | CCTTC | 7 cut(s) | 177, 260, 473, 650, 656, 662, 668 |
| HpyCH4III | ACNGT | 1 cut(s) | 1172 |
| HpyCH4V | TGCA | 6 cut(s) | 194, 519, 589, 691, 883, 1031 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 556, 753, 1051, 1123 |
| HpyF3I | CTNAG | 3 cut(s) | 209, 577, 1160 |
| Hsp92I | GRCGYC | 1 cut(s) | 745 |
| Hsp92II | CATG | 5 cut(s) | 161, 261, 316, 458, 1333 |
| HspAI | GCGC | 2 cut(s) | 483, 745 |
| KasI | GGCGCC | 1 cut(s) | 744 |
| KflI | GGGWCCC | 1 cut(s) | 955 |
| Ksp22I | TGATCA | 1 cut(s) | 613 |
| LguI | GCTCTTC | 1 cut(s) | 111 |
| LmnI | GCTCC | 3 cut(s) | 224, 490, 736 |
| LweI | GCATC | 2 cut(s) | 576, 1032 |
| MaeI | CTAG | 3 cut(s) | 17, 449, 735 |
| MaeIII | GTNAC | 1 cut(s) | 541 |
| MhlI | GDGCHC | 1 cut(s) | 733 |
| MluCI | AATT | 9 cut(s) | 75, 93, 214, 320, 788, 944, 1022, 1133, 1325 |
| Mly113I | GGCGCC | 1 cut(s) | 745 |
| MlyI | GAGTC | 3 cut(s) | 420, 687, 895 |
| MnlI | CCTC | 5 cut(s) | 34, 508, 692, 694, 697 |
| MseI | TTAA | 1 cut(s) | 323 |
| MspI | CCGG | 5 cut(s) | 357, 390, 488, 502, 1307 |
| MspR9I | CCNGG | 3 cut(s) | 390, 502, 1307 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 556, 753, 1051, 1123 |
| NarI | GGCGCC | 1 cut(s) | 745 |
| NciI | CCSGG | 3 cut(s) | 390, 502, 1307 |
| NlaIII | CATG | 5 cut(s) | 161, 261, 316, 458, 1333 |
| NlaIV | GGNNCC | 8 cut(s) | 7, 164, 496, 732, 746, 956, 957, 966 |
| NmuCI | GTSAC | 1 cut(s) | 541 |
| NspV | TTCGAA | 2 cut(s) | 297, 934 |
| PciSI | GCTCTTC | 1 cut(s) | 111 |
| PfeI | GAWTC | 5 cut(s) | 440, 571, 641, 869, 1141 |
| PfoI | TCCNGGA | 2 cut(s) | 500, 1305 |
| PleI | GAGTC | 3 cut(s) | 420, 686, 894 |
| PluTI | GGCGCC | 1 cut(s) | 748 |
| PpsI | GAGTC | 3 cut(s) | 420, 686, 894 |
| PpuMI | RGGWCCY | 1 cut(s) | 955 |
| PsiI | TTATAA | 1 cut(s) | 840 |
| Psp5II | RGGWCCY | 1 cut(s) | 955 |
| PspN4I | GGNNCC | 8 cut(s) | 7, 164, 496, 732, 746, 956, 957, 966 |
| PspPI | GGNCC | 5 cut(s) | 43, 392, 558, 780, 955 |
| PspPPI | RGGWCCY | 1 cut(s) | 955 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 132, 164 |
| RsaI | GTAC | 5 cut(s) | 15, 204, 284, 293, 893 |
| RsaNI | GTAC | 5 cut(s) | 14, 203, 283, 292, 892 |
| SapI | GCTCTTC | 1 cut(s) | 111 |
| SaqAI | TTAA | 1 cut(s) | 323 |
| Sau96I | GGNCC | 5 cut(s) | 43, 392, 558, 780, 955 |
| SchI | GAGTC | 3 cut(s) | 420, 687, 895 |
| ScrFI | CCNGG | 3 cut(s) | 390, 502, 1307 |
| SduI | GDGCHC | 1 cut(s) | 733 |
| SetI | ASST | 5 cut(s) | 378, 397, 690, 815, 1239 |
| SfaNI | GCATC | 2 cut(s) | 576, 1032 |
| SfoI | GGCGCC | 1 cut(s) | 746 |
| SfuI | TTCGAA | 2 cut(s) | 297, 934 |
| SinI | GGWCC | 2 cut(s) | 392, 955 |
| SmlI | CTYRAG | 1 cut(s) | 369 |
| SmoI | CTYRAG | 1 cut(s) | 369 |
| Sse9I | AATT | 9 cut(s) | 75, 93, 214, 320, 788, 944, 1022, 1133, 1325 |
| SsiI | CCGC | 2 cut(s) | 829, 992 |
| SspDI | GGCGCC | 1 cut(s) | 744 |
| SspMI | CTAG | 3 cut(s) | 17, 449, 735 |
| StyD4I | CCNGG | 3 cut(s) | 388, 500, 1305 |
| StyI | CCWWGG | 2 cut(s) | 566, 749 |
| TaaI | ACNGT | 1 cut(s) | 1172 |
| TaqI | TCGA | 8 cut(s) | 50, 297, 538, 684, 774, 934, 1018, 1087 |
| TaqII | GACCGA | 1 cut(s) | 352 |
| TasI | AATT | 9 cut(s) | 75, 93, 214, 320, 788, 944, 1022, 1133, 1325 |
| TatI | WGTACW | 3 cut(s) | 13, 202, 282 |
| TfiI | GAWTC | 5 cut(s) | 440, 571, 641, 869, 1141 |
| Tru1I | TTAA | 1 cut(s) | 323 |
| Tru9I | TTAA | 1 cut(s) | 323 |
| TseFI | GTSAC | 1 cut(s) | 541 |
| Tsp45I | GTSAC | 1 cut(s) | 541 |
| TspGWI | ACGGA | 2 cut(s) | 709, 1184 |
| VpaK11BI | GGWCC | 2 cut(s) | 392, 955 |
| XapI | RAATTY | 2 cut(s) | 1022, 1325 |
| XspI | CTAG | 3 cut(s) | 17, 449, 735 |