ATMG00810

lipid metabolic process

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
Mt
OG0003077
Physical Location & Seq
Reverse (-)
227709 .. 228431
723 bp
Loading structure...
UTR
Exon/CDS
Intron
ATMG00810.1

Sequence Viewer

Length: 723 bp
ATGTATCTGCTTCTCTACGTGGATGATATTCTTCTCACGGGCAGTTCCAACACTCTGCTCAATATGTTGATCTTTCAGCTCAGCTCCACCTTCTCAATGAAAGACCTTGGACCAGTCCACTATTTTCTGGGAATTCAGATCAAAACTCATCCTTCGGGTCTGTTTCTATCCCAAACCAAGTATGCTGAACAGATTCTGAACAATGCAGGGATGTTAGATTGCAAACCTATGTCTACTCCTCTGCCCCTTAAGCTCAACTCCTCTGTTTCCACTGCTAAGTATCCGGATCCTTCAGACTTTCGCAGCATTGTAGGTGCTCTCCAATACTTAACTCTCACTCGACCAGACATAAGTTATGCCGTGAACATTGTCTGTCAGCGAATGCATGAGCCTACACTCGCTGATTTTGATCTCCTGAAGCGTGTCCTTCGCTATGTTAAAGGCACCATCTTTCATGGGCTGTATATTCACAAAAACAGCAAGCTCAATGTTCAGGCCTTCTGTGATAGTGACTGGGCAGGATGTACATCCACGAGGAGGTCTACAACTGGATTCTGTACGTTTCTCGGATGCAATATTATCTCCTGGTCCGCAAAACGCCAGCCTACAGTGTCTCGTTCTTCTACGGAAACGGAATATCGAGCCCTTGCACTAACGGCTGCGGAGCTCACTTGGTCATCTGCTTCGAGATCTCGGGATCCCTCAGCAATGAACACTAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4219 RVT_2 Retrotran_gag_2 Retrotran_gag_3 gag_pre-integrs rve zf-CCHC

Protein Analysis

240

Amino Acids

26.78

Weight (kDa)

9.01

Isoelectric Point (pI)

50.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_2 PF07727 4 - 81 3.9e-16 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 443
AccI GTMKAC 2 cut(s) 233, 542
AccIII TCCGGA 1 cut(s) 283
AciI CCGC 2 cut(s) 591, 662
AclWI GGATC 4 cut(s) 281, 294, 692, 705
AcsI RAATTY 1 cut(s) 132
AcuI CTGAAG 2 cut(s) 276, 437
AfaI GTAC 2 cut(s) 526, 559
AfiI CCNNNNNNNGG 1 cut(s) 537
AflII CTTAAG 1 cut(s) 248
AjnI CCWGG 1 cut(s) 584
AluBI AGCT 5 cut(s) 79, 84, 253, 484, 667
AluI AGCT 5 cut(s) 79, 84, 253, 484, 667
Alw21I GWGCWC 2 cut(s) 319, 669
Alw26I GTCTC 1 cut(s) 618
AlwI GGATC 4 cut(s) 281, 294, 692, 705
AlwNI CAGNNNCTG 1 cut(s) 196
Ama87I CYCGRG 1 cut(s) 693
Aor13HI TCCGGA 1 cut(s) 283
AoxI GGCC 1 cut(s) 495
ApeKI GCWGC 2 cut(s) 303, 659
ApoI RAATTY 1 cut(s) 132
Asp700I GAANNNNTTC 1 cut(s) 192
AspS9I GGNCC 2 cut(s) 110, 588
AvaI CYCGRG 1 cut(s) 693
AvaII GGWCC 2 cut(s) 110, 588
BamHI GGATCC 2 cut(s) 286, 697
BanI GGYRCC 1 cut(s) 443
BanII GRGCYC 2 cut(s) 646, 669
BauI CACGAG 1 cut(s) 532
Bbv12I GWGCWC 2 cut(s) 319, 669
BbvCI CCTCAGC 1 cut(s) 703
BbvI GCAGC 2 cut(s) 315, 646
BccI CCATC 1 cut(s) 455
BceAI ACGGC 2 cut(s) 344, 672
BciT130I CCWGG 1 cut(s) 586
BciVI GTATCC 1 cut(s) 291
BcoDI GTCTC 1 cut(s) 618
BfmI CTRYAG 1 cut(s) 606
BfrI CTTAAG 1 cut(s) 248
BfuI GTATCC 1 cut(s) 291
BglII AGATCT 1 cut(s) 689
BisI GCNGC 2 cut(s) 304, 660
BlpI GCTNAGC 1 cut(s) 80
BlsI GCNGC 2 cut(s) 305, 661
Bme1390I CCNGG 1 cut(s) 586
Bme18I GGWCC 2 cut(s) 110, 588
BmeT110I CYCGRG 1 cut(s) 693
BmgT120I GGNCC 2 cut(s) 110, 588
BmiI GGNNCC 3 cut(s) 288, 445, 699
BmrFI CCNGG 1 cut(s) 586
BmrI ACTGGG 1 cut(s) 523
BmsI GCATC 1 cut(s) 560
BmuI ACTGGG 1 cut(s) 523
Bpu10I CCTNAGC 1 cut(s) 703
Bpu1102I GCTNAGC 1 cut(s) 80
BsaAI YACGTR 1 cut(s) 19
BsaBI GATNNNNATC 2 cut(s) 408, 526
BsaJI CCNNGG 1 cut(s) 106
BsaWI WCCGGW 1 cut(s) 283
Bsc4I CCNNNNNNNGG 1 cut(s) 537
Bse1I ACTGG 3 cut(s) 113, 518, 553
Bse3DI GCAATG 1 cut(s) 714
Bse8I GATNNNNATC 2 cut(s) 408, 526
BseAI TCCGGA 1 cut(s) 283
BseBI CCWGG 1 cut(s) 586
BseDI CCNNGG 1 cut(s) 106
BseGI GGATG 6 cut(s) 28, 148, 216, 527, 527, 575
BseJI GATNNNNATC 2 cut(s) 408, 526
BseLI CCNNNNNNNGG 1 cut(s) 537
BseMI GCAATG 1 cut(s) 714
BseMII CTCAG 2 cut(s) 94, 717
BseNI ACTGG 3 cut(s) 113, 518, 553
BseRI GAGGAG 3 cut(s) 228, 250, 550
BseXI GCAGC 2 cut(s) 315, 646
BshFI GGCC 1 cut(s) 497
BshNI GGYRCC 1 cut(s) 443
BsiHKAI GWGCWC 2 cut(s) 319, 669
BsiHKCI CYCGRG 1 cut(s) 693
BsiSI CCGG 1 cut(s) 284
BslI CCNNNNNNNGG 1 cut(s) 537
BsmAI GTCTC 1 cut(s) 618
BsmI GAATGC 1 cut(s) 387
BsnI GGCC 1 cut(s) 497
BsoBI CYCGRG 1 cut(s) 693
Bsp1286I GDGCHC 3 cut(s) 319, 646, 669
Bsp13I TCCGGA 1 cut(s) 283
Bsp1407I TGTACA 1 cut(s) 524
Bsp143I GATC 6 cut(s) 69, 138, 286, 409, 689, 697
Bsp1720I GCTNAGC 1 cut(s) 80
BspACI CCGC 2 cut(s) 591, 662
BspANI GGCC 1 cut(s) 497
BspCNI CTCAG 2 cut(s) 93, 716
BspEI TCCGGA 1 cut(s) 283
BspLI GGNNCC 3 cut(s) 288, 445, 699
BspPI GGATC 4 cut(s) 281, 294, 692, 705
BspT107I GGYRCC 1 cut(s) 443
BspTI CTTAAG 1 cut(s) 248
BsrDI GCAATG 1 cut(s) 714
BsrGI TGTACA 1 cut(s) 524
BsrI ACTGG 3 cut(s) 113, 518, 553
BssECI CCNNGG 1 cut(s) 106
BssMI GATC 6 cut(s) 69, 138, 286, 409, 689, 697
BssSI CACGAG 1 cut(s) 532
BssT1I CCWWGG 1 cut(s) 106
Bst2BI CACGAG 1 cut(s) 532
Bst2UI CCWGG 1 cut(s) 586
Bst4CI ACNGT 1 cut(s) 610
BstAFI CTTAAG 1 cut(s) 248
BstAUI TGTACA 1 cut(s) 524
BstBAI YACGTR 1 cut(s) 19
BstC8I GCNNGC 2 cut(s) 482, 602
BstDEI CTNAG 3 cut(s) 80, 276, 703
BstF5I GGATG 6 cut(s) 28, 148, 216, 527, 527, 575
BstKTI GATC 6 cut(s) 72, 141, 289, 412, 692, 700
BstMAI GTCTC 1 cut(s) 618
BstMBI GATC 6 cut(s) 69, 138, 286, 409, 689, 697
BstMWI GCNNNNNNNGC 2 cut(s) 250, 656
BstNI CCWGG 1 cut(s) 586
BstSCI CCNGG 1 cut(s) 584
BstSFI CTRYAG 1 cut(s) 606
BstV1I GCAGC 2 cut(s) 315, 646
BstX2I RGATCY 3 cut(s) 286, 689, 697
BstYI RGATCY 3 cut(s) 286, 689, 697
BsuI GTATCC 1 cut(s) 291
BsuRI GGCC 1 cut(s) 497
BtsCI GGATG 6 cut(s) 28, 148, 216, 527, 527, 575
BtsI GCAGTG 1 cut(s) 270
BtsIMutI CAGTG 2 cut(s) 270, 615
Cac8I GCNNGC 2 cut(s) 482, 602
CaiI CAGNNNCTG 1 cut(s) 196
Cfr13I GGNCC 2 cut(s) 110, 588
Csp6I GTAC 2 cut(s) 525, 558
CviAII CATG 2 cut(s) 386, 455
CviQI GTAC 2 cut(s) 525, 558
DdeI CTNAG 3 cut(s) 80, 276, 703
DpnI GATC 6 cut(s) 71, 140, 288, 411, 691, 699
DpnII GATC 6 cut(s) 69, 138, 286, 409, 689, 697
Ecl136II GAGCTC 1 cut(s) 667
Eco130I CCWWGG 1 cut(s) 106
Eco147I AGGCCT 1 cut(s) 497
Eco24I GRGCYC 2 cut(s) 646, 669
Eco47I GGWCC 2 cut(s) 110, 588
Eco53kI GAGCTC 1 cut(s) 667
Eco57I CTGAAG 2 cut(s) 276, 437
Eco88I CYCGRG 1 cut(s) 693
EcoICRI GAGCTC 1 cut(s) 667
EcoRI GAATTC 1 cut(s) 132
EcoRII CCWGG 1 cut(s) 584
EcoT14I CCWWGG 1 cut(s) 106
EcoT22I ATGCAT 1 cut(s) 387
EcoT38I GRGCYC 2 cut(s) 646, 669
ErhI CCWWGG 1 cut(s) 106
FaeI CATG 2 cut(s) 389, 458
FaiI YATR 9 cut(s) 65, 183, 230, 350, 357, 387, 435, 456, 465
FatI CATG 2 cut(s) 385, 454
FblI GTMKAC 2 cut(s) 233, 542
Fnu4HI GCNGC 2 cut(s) 304, 660
FokI GGATG 6 cut(s) 35, 135, 223, 514, 534, 582
FriOI GRGCYC 2 cut(s) 646, 669
Fsp4HI GCNGC 2 cut(s) 304, 660
GluI GCNGC 2 cut(s) 304, 660
HaeIII GGCC 1 cut(s) 497
HapII CCGG 1 cut(s) 284
Hin1II CATG 2 cut(s) 389, 458
HinfI GANTC 2 cut(s) 193, 552
HpaII CCGG 1 cut(s) 284
Hpy166II GTNNAC 4 cut(s) 118, 234, 364, 543
Hpy188I TCNGA 4 cut(s) 138, 198, 295, 569
Hpy188III TCNNGA 4 cut(s) 284, 415, 687, 695
Hpy8I GTNNAC 4 cut(s) 118, 234, 364, 543
HpyAV CCTTC 5 cut(s) 100, 162, 300, 437, 508
HpyCH4III ACNGT 1 cut(s) 610
HpyCH4IV ACGT 2 cut(s) 18, 560
HpyCH4V TGCA 5 cut(s) 206, 222, 385, 573, 650
HpyF10VI GCNNNNNNNGC 2 cut(s) 250, 656
HpyF3I CTNAG 3 cut(s) 80, 276, 703
HpySE526I ACGT 2 cut(s) 18, 560
Hsp92II CATG 2 cut(s) 389, 458
Kpn2I TCCGGA 1 cut(s) 283
Kzo9I GATC 6 cut(s) 69, 138, 286, 409, 689, 697
LmnI GCTCC 2 cut(s) 89, 664
Lsp1109I GCAGC 2 cut(s) 315, 646
LweI GCATC 1 cut(s) 560
MaeII ACGT 2 cut(s) 18, 560
MaeIII GTNAC 1 cut(s) 509
MalI GATC 6 cut(s) 71, 140, 288, 411, 691, 699
MboI GATC 6 cut(s) 69, 138, 286, 409, 689, 697
MboII GAAGA 2 cut(s) 23, 612
MflI RGATCY 3 cut(s) 286, 689, 697
MhlI GDGCHC 3 cut(s) 319, 646, 669
MluCI AATT 1 cut(s) 132
MmeI TCCRAC 1 cut(s) 72
MnlI CCTC 5 cut(s) 249, 271, 528, 531, 712
Mph1103I ATGCAT 1 cut(s) 387
MroI TCCGGA 1 cut(s) 283
MroXI GAANNNNTTC 1 cut(s) 192
MseI TTAA 3 cut(s) 249, 329, 438
MspCI CTTAAG 1 cut(s) 248
MspI CCGG 1 cut(s) 284
MspR9I CCNGG 1 cut(s) 586
Mva1269I GAATGC 1 cut(s) 387
MvaI CCWGG 1 cut(s) 586
MwoI GCNNNNNNNGC 2 cut(s) 250, 656
NdeII GATC 6 cut(s) 69, 138, 286, 409, 689, 697
NlaIII CATG 2 cut(s) 389, 458
NlaIV GGNNCC 3 cut(s) 288, 445, 699
NmuCI GTSAC 1 cut(s) 509
NsiI ATGCAT 1 cut(s) 387
PceI AGGCCT 1 cut(s) 497
PctI GAATGC 1 cut(s) 387
PdmI GAANNNNTTC 1 cut(s) 192
PfeI GAWTC 2 cut(s) 193, 552
PkrI GCNGC 2 cut(s) 305, 661
Ppu21I YACGTR 1 cut(s) 19
Psp124BI GAGCTC 1 cut(s) 669
Psp6I CCWGG 1 cut(s) 584
PspGI CCWGG 1 cut(s) 584
PspN4I GGNNCC 3 cut(s) 288, 445, 699
PspPI GGNCC 2 cut(s) 110, 588
PstNI CAGNNNCTG 1 cut(s) 196
PsuI RGATCY 3 cut(s) 286, 689, 697
RsaI GTAC 2 cut(s) 526, 559
RsaNI GTAC 2 cut(s) 525, 558
SacI GAGCTC 1 cut(s) 669
SaqAI TTAA 3 cut(s) 249, 329, 438
SatI GCNGC 2 cut(s) 304, 660
Sau3AI GATC 6 cut(s) 69, 138, 286, 409, 689, 697
Sau96I GGNCC 2 cut(s) 110, 588
ScrFI CCNGG 1 cut(s) 586
SduI GDGCHC 3 cut(s) 319, 646, 669
SfaNI GCATC 1 cut(s) 560
SfcI CTRYAG 1 cut(s) 606
SinI GGWCC 2 cut(s) 110, 588
SmlI CTYRAG 1 cut(s) 248
SmoI CTYRAG 1 cut(s) 248
Sse9I AATT 1 cut(s) 132
SseBI AGGCCT 1 cut(s) 497
SsiI CCGC 2 cut(s) 591, 662
SspI AATATT 1 cut(s) 577
SstI GAGCTC 1 cut(s) 669
StuI AGGCCT 1 cut(s) 497
StyD4I CCNGG 1 cut(s) 584
StyI CCWWGG 1 cut(s) 106
TaaI ACNGT 1 cut(s) 610
TaiI ACGT 2 cut(s) 21, 563
TaqI TCGA 3 cut(s) 340, 640, 686
TasI AATT 1 cut(s) 132
TatI WGTACW 1 cut(s) 524
TfiI GAWTC 2 cut(s) 193, 552
Tru1I TTAA 3 cut(s) 249, 329, 438
Tru9I TTAA 3 cut(s) 249, 329, 438
TscAI CASTG 2 cut(s) 277, 615
TseFI GTSAC 1 cut(s) 509
TseI GCWGC 2 cut(s) 303, 659
Tsp45I GTSAC 1 cut(s) 509
TspDTI ATGAA 2 cut(s) 113, 443
TspGWI ACGGA 2 cut(s) 641, 647
TspRI CASTG 2 cut(s) 277, 615
Vha464I CTTAAG 1 cut(s) 248
VpaK11BI GGWCC 2 cut(s) 110, 588
XapI RAATTY 1 cut(s) 132
XmiI GTMKAC 2 cut(s) 233, 542
XmnI GAANNNNTTC 1 cut(s) 192
Zsp2I ATGCAT 1 cut(s) 387
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.