RchiOBHm_Chr4g0410941

Mitochondrial protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0003077
Physical Location & Seq
Forward (+)
34743630 .. 34744487
858 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38181

Sequence Viewer

Length: 591 bp
ATGTGTAACCTCTCCACAATCAAAACTGATTGTGTAACCTCTCCACAATCAAAACTGATTGTTGGCTCAGTTGAGCGTTACAAGGCCCGCCTTGTTGCCAAAGGATTCCATCAACAGCGCGGGATCGACTATGGTGAAACCTATAGTCCTGTTATCAAGCCCGCTACCATTCGAACCGTTCTCTGTGTTGCTGTGTCTAGGGGTTGGCCTCTCCGTCAGCTGGATGTCAAAAATGCATTCCTCCATGGCTATCTTCAGGAAGACGTTTACATGACTCAGCCTCCTGGCTTCATCAATTCCTCTCGGCCCTCCTATGTCTGTAAGCTTCACAAGGCACTTTATGGCCTCAAACAAGCACCCCGTGCTTGGTTTCAATGCATGAGCTCTTTTGTTGGCTTTCGACTTAGTAAAGCTGACTCATCTTTATTCATCTATCAACATGGATTGCATACAATTTTCTTTTTACTCTATGTTGATGACATTGTCATTACGGGCAGCAGTGATCAGCTTCTTCAAAGTTTTATTGATGCCTTGGGCCGTGGATTTGACATTAAGGATCTTGGTCCCCTTCACTATTTCCTTGGTTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_2 Retrotran_gag_3

Protein Analysis

196

Amino Acids

22.08

Weight (kDa)

9.21

Isoelectric Point (pI)

38.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_2 PF07727 24 - 196 9.7e-53 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 120
AciI CCGC 3 cut(s) 88, 120, 162
AclWI GGATC 2 cut(s) 131, 564
AcuI CTGAAG 1 cut(s) 239
AdeI CACNNNGTG 1 cut(s) 362
AfiI CCNNNNNNNGG 2 cut(s) 220, 366
AgsI TTSAA 2 cut(s) 374, 515
AjnI CCWGG 1 cut(s) 283
AluBI AGCT 5 cut(s) 220, 325, 384, 413, 508
AluI AGCT 5 cut(s) 220, 325, 384, 413, 508
Alw21I GWGCWC 1 cut(s) 386
AlwI GGATC 2 cut(s) 131, 564
AoxI GGCC 5 cut(s) 84, 206, 305, 343, 535
ApeKI GCWGC 1 cut(s) 495
AspLEI GCGC 1 cut(s) 120
AspS9I GGNCC 4 cut(s) 85, 306, 535, 563
AsuHPI GGTGA 1 cut(s) 146
AsuII TTCGAA 1 cut(s) 172
AvaII GGWCC 1 cut(s) 563
BanII GRGCYC 1 cut(s) 386
BbsI GAAGAC 1 cut(s) 267
Bbv12I GWGCWC 1 cut(s) 386
BbvI GCAGC 1 cut(s) 507
BccI CCATC 1 cut(s) 117
BceAI ACGGC 1 cut(s) 522
BciT130I CCWGG 1 cut(s) 285
BclI TGATCA 1 cut(s) 502
BfaI CTAG 1 cut(s) 198
BfmI CTRYAG 1 cut(s) 142
BisI GCNGC 1 cut(s) 496
BlsI GCNGC 1 cut(s) 497
Bme1390I CCNGG 1 cut(s) 285
Bme18I GGWCC 1 cut(s) 563
BmgT120I GGNCC 4 cut(s) 85, 306, 535, 563
BmiI GGNNCC 1 cut(s) 565
BmrFI CCNGG 1 cut(s) 285
BmsI GCATC 1 cut(s) 517
BpiI GAAGAC 1 cut(s) 267
Bpu14I TTCGAA 1 cut(s) 172
BsaJI CCNNGG 4 cut(s) 244, 531, 538, 580
BsaXI ACNNNNNCTCC 2 cut(s) 265, 295
Bsc4I CCNNNNNNNGG 2 cut(s) 220, 366
BseBI CCWGG 1 cut(s) 285
BseDI CCNNGG 4 cut(s) 244, 531, 538, 580
BseGI GGATG 1 cut(s) 229
BseLI CCNNNNNNNGG 2 cut(s) 220, 366
BseMII CTCAG 2 cut(s) 81, 290
BseXI GCAGC 1 cut(s) 507
Bsh1236I CGCG 1 cut(s) 120
BshFI GGCC 5 cut(s) 86, 208, 307, 345, 537
BsiHKAI GWGCWC 1 cut(s) 386
BslFI GGGAC 1 cut(s) 549
BslI CCNNNNNNNGG 2 cut(s) 220, 366
BsmFI GGGAC 1 cut(s) 549
BsmI GAATGC 1 cut(s) 236
BsnI GGCC 5 cut(s) 86, 208, 307, 345, 537
Bsp119I TTCGAA 1 cut(s) 172
Bsp1286I GDGCHC 1 cut(s) 386
Bsp143I GATC 3 cut(s) 123, 502, 556
Bsp19I CCATGG 1 cut(s) 244
BspACI CCGC 3 cut(s) 88, 120, 162
BspANI GGCC 5 cut(s) 86, 208, 307, 345, 537
BspCNI CTCAG 2 cut(s) 80, 289
BspFNI CGCG 1 cut(s) 120
BspLI GGNNCC 1 cut(s) 565
BspPI GGATC 2 cut(s) 131, 564
BspT104I TTCGAA 1 cut(s) 172
BssECI CCNNGG 4 cut(s) 244, 531, 538, 580
BssMI GATC 3 cut(s) 123, 502, 556
BssT1I CCWWGG 3 cut(s) 244, 531, 580
Bst2UI CCWGG 1 cut(s) 285
Bst4CI ACNGT 1 cut(s) 178
BstAPI GCANNNNNTGC 1 cut(s) 362
BstBI TTCGAA 1 cut(s) 172
BstC8I GCNNGC 2 cut(s) 88, 162
BstDEI CTNAG 3 cut(s) 67, 276, 404
BstDSI CCRYGG 2 cut(s) 244, 538
BstF5I GGATG 1 cut(s) 229
BstFNI CGCG 1 cut(s) 120
BstHHI GCGC 1 cut(s) 120
BstKTI GATC 3 cut(s) 126, 505, 559
BstMBI GATC 3 cut(s) 123, 502, 556
BstMWI GCNNNNNNNGC 1 cut(s) 362
BstNI CCWGG 1 cut(s) 285
BstSCI CCNGG 1 cut(s) 283
BstSFI CTRYAG 1 cut(s) 142
BstUI CGCG 1 cut(s) 120
BstV1I GCAGC 1 cut(s) 507
BstV2I GAAGAC 1 cut(s) 267
BstX2I RGATCY 1 cut(s) 556
BstYI RGATCY 1 cut(s) 556
BsuRI GGCC 5 cut(s) 86, 208, 307, 345, 537
BtgI CCRYGG 2 cut(s) 244, 538
BtsCI GGATG 1 cut(s) 229
BtsI GCAGTG 1 cut(s) 505
BtsIMutI CAGTG 1 cut(s) 505
Cac8I GCNNGC 2 cut(s) 88, 162
CfoI GCGC 1 cut(s) 120
Cfr13I GGNCC 4 cut(s) 85, 306, 535, 563
CviAII CATG 4 cut(s) 245, 271, 379, 440
DdeI CTNAG 3 cut(s) 67, 276, 404
DpnI GATC 3 cut(s) 125, 504, 558
DpnII GATC 3 cut(s) 123, 502, 556
DraIII CACNNNGTG 1 cut(s) 362
Ecl136II GAGCTC 1 cut(s) 384
Eco130I CCWWGG 3 cut(s) 244, 531, 580
Eco24I GRGCYC 1 cut(s) 386
Eco47I GGWCC 1 cut(s) 563
Eco53kI GAGCTC 1 cut(s) 384
Eco57I CTGAAG 1 cut(s) 239
EcoICRI GAGCTC 1 cut(s) 384
EcoRII CCWGG 1 cut(s) 283
EcoT14I CCWWGG 3 cut(s) 244, 531, 580
EcoT22I ATGCAT 2 cut(s) 238, 380
EcoT38I GRGCYC 1 cut(s) 386
ErhI CCWWGG 3 cut(s) 244, 531, 580
FaeI CATG 4 cut(s) 248, 274, 382, 443
FaqI GGGAC 1 cut(s) 549
FatI CATG 4 cut(s) 244, 270, 378, 439
FauI CCCGC 3 cut(s) 95, 113, 169
FbaI TGATCA 1 cut(s) 502
Fnu4HI GCNGC 1 cut(s) 496
FokI GGATG 1 cut(s) 236
FriOI GRGCYC 1 cut(s) 386
Fsp4HI GCNGC 1 cut(s) 496
FspBI CTAG 1 cut(s) 198
GlaI GCGC 1 cut(s) 119
GluI GCNGC 1 cut(s) 496
HaeIII GGCC 5 cut(s) 86, 208, 307, 345, 537
HhaI GCGC 1 cut(s) 120
Hin1II CATG 4 cut(s) 248, 274, 382, 443
Hin6I GCGC 1 cut(s) 118
HinP1I GCGC 1 cut(s) 118
HindIII AAGCTT 1 cut(s) 323
HinfI GANTC 3 cut(s) 105, 274, 416
HphI GGTGA 1 cut(s) 146
Hpy166II GTNNAC 1 cut(s) 268
Hpy188III TCNNGA 1 cut(s) 257
Hpy8I GTNNAC 1 cut(s) 268
HpyAV CCTTC 1 cut(s) 578
HpyCH4III ACNGT 1 cut(s) 178
HpyCH4IV ACGT 1 cut(s) 264
HpyCH4V TGCA 3 cut(s) 236, 378, 448
HpyF10VI GCNNNNNNNGC 1 cut(s) 362
HpyF3I CTNAG 3 cut(s) 67, 276, 404
HpySE526I ACGT 1 cut(s) 264
Hsp92II CATG 4 cut(s) 248, 274, 382, 443
HspAI GCGC 1 cut(s) 118
Ksp22I TGATCA 1 cut(s) 502
Kzo9I GATC 3 cut(s) 123, 502, 556
LpnPI CCDG 5 cut(s) 162, 206, 242, 270, 297
Lsp1109I GCAGC 1 cut(s) 507
LweI GCATC 1 cut(s) 517
MaeI CTAG 1 cut(s) 198
MaeII ACGT 1 cut(s) 264
MaeIII GTNAC 3 cut(s) 5, 34, 77
MalI GATC 3 cut(s) 125, 504, 558
MboI GATC 3 cut(s) 123, 502, 556
MboII GAAGA 3 cut(s) 245, 272, 503
MflI RGATCY 1 cut(s) 556
MhlI GDGCHC 1 cut(s) 386
MluCI AATT 2 cut(s) 295, 453
MlyI GAGTC 2 cut(s) 268, 410
MnlI CCTC 8 cut(s) 20, 49, 219, 251, 291, 310, 319, 356
Mph1103I ATGCAT 2 cut(s) 238, 380
MseI TTAA 1 cut(s) 552
MspA1I CMGCKG 1 cut(s) 220
MspR9I CCNGG 1 cut(s) 285
Mva1269I GAATGC 1 cut(s) 236
MvaI CCWGG 1 cut(s) 285
MvnI CGCG 1 cut(s) 120
MwoI GCNNNNNNNGC 1 cut(s) 362
NcoI CCATGG 1 cut(s) 244
NdeII GATC 3 cut(s) 123, 502, 556
NlaIII CATG 4 cut(s) 248, 274, 382, 443
NlaIV GGNNCC 1 cut(s) 565
NmeAIII GCCGAG 1 cut(s) 283
NsiI ATGCAT 2 cut(s) 238, 380
NspV TTCGAA 1 cut(s) 172
PctI GAATGC 1 cut(s) 236
PfeI GAWTC 1 cut(s) 105
PflFI GACNNNGTC 1 cut(s) 482
PkrI GCNGC 1 cut(s) 497
PleI GAGTC 2 cut(s) 268, 410
PpsI GAGTC 2 cut(s) 268, 410
Psp124BI GAGCTC 1 cut(s) 386
Psp6I CCWGG 1 cut(s) 283
PspGI CCWGG 1 cut(s) 283
PspN4I GGNNCC 1 cut(s) 565
PspPI GGNCC 4 cut(s) 85, 306, 535, 563
PsuI RGATCY 1 cut(s) 556
PsyI GACNNNGTC 1 cut(s) 482
PvuII CAGCTG 1 cut(s) 220
SacI GAGCTC 1 cut(s) 386
SaqAI TTAA 1 cut(s) 552
SatI GCNGC 1 cut(s) 496
Sau3AI GATC 3 cut(s) 123, 502, 556
Sau96I GGNCC 4 cut(s) 85, 306, 535, 563
SchI GAGTC 2 cut(s) 268, 410
ScrFI CCNGG 1 cut(s) 285
SduI GDGCHC 1 cut(s) 386
SetI ASST 9 cut(s) 12, 41, 143, 222, 267, 327, 386, 415, 510
SfaNI GCATC 1 cut(s) 517
SfcI CTRYAG 1 cut(s) 142
SfuI TTCGAA 1 cut(s) 172
SinI GGWCC 1 cut(s) 563
Sse9I AATT 2 cut(s) 295, 453
SsiI CCGC 3 cut(s) 88, 120, 162
SspMI CTAG 1 cut(s) 198
SstI GAGCTC 1 cut(s) 386
StyD4I CCNGG 1 cut(s) 283
StyI CCWWGG 3 cut(s) 244, 531, 580
TaaI ACNGT 1 cut(s) 178
TaiI ACGT 1 cut(s) 267
TaqI TCGA 3 cut(s) 126, 172, 400
TasI AATT 2 cut(s) 295, 453
TfiI GAWTC 1 cut(s) 105
Tru1I TTAA 1 cut(s) 552
Tru9I TTAA 1 cut(s) 552
TscAI CASTG 1 cut(s) 505
TseI GCWGC 1 cut(s) 495
TspDTI ATGAA 2 cut(s) 280, 418
TspGWI ACGGA 1 cut(s) 203
TspRI CASTG 1 cut(s) 505
Tth111I GACNNNGTC 1 cut(s) 482
VpaK11BI GGWCC 1 cut(s) 563
XspI CTAG 1 cut(s) 198
Zsp2I ATGCAT 2 cut(s) 238, 380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.