RchiOBHm_Chr1g0348001

Mitochondrial protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0003077
Physical Location & Seq
Forward (+)
40731235 .. 40732126
892 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ57406

Sequence Viewer

Length: 795 bp
ATGTCCGCTAAGTCTGACCTCCATGCCACTGATGATGTAGTACTTGAGAACCCTACCACATTCCGTGAACTTGTTGGGTCCTTGCAATATCTCACCATCACACGCCCTGACATTGCCTTTGCAGTTAACACGATTTCACAATTTATGAGCCAGCCACGTGTTTCTCATCTTGTCGCTGTCAAGCGCATCCTTCGTTATGTCAAAGGCACTCTTGCTCATGGTTTACTGTTCACACCACAGCGTCAACCGGTTGCTCTATCTGCCTACTCTGATGCTGATTGGGCCGGCTGTCCCATTACTCGCCGCTCAACATCTGGCTATCTTGTGTACCTCGGTTCTAACCTCATATCTTGGTGTTCTAAAAAGCAGCCTACCATTGCTCGCTCTAGTGCCGAGTCCGAGTATCGCTCTCTTGCCCATGCCAGTGCCGAAACTACTTGGTTGGGATATTTACTATATGAGCTTGGTGCCCGGATTCAGTTCCCCATTTTGTTACATTGTGATAATCTAAGTGCAACTTATATGGCTTCCAATCCTGTTTTTCATGCACGCACCAAGCACATTGAGCTTGATTACCACTATGTTCGTGAAAAGGTTGCTCGTGGTAGTCATCGGGTTTGTTTCATTCCATCCAAGGATCAGCCGGCAGATTTGCTCACTAAGCCACTTCACAAGTCTCGTCATCTTCTCTTTTCCGGCAAACTTGTCCGTTCAGGACCGCCAAGTTTGAGGGGGGCTGTTAAAGAGAATCAATCTCCTCCTTCAATCACTCCCAGAATCTCCTCCATTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_2 gag_pre-integrs

Protein Analysis

264

Amino Acids

29.43

Weight (kDa)

9.61

Isoelectric Point (pI)

48.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 467
AccBSI CCGCTC 1 cut(s) 306
AciI CCGC 3 cut(s) 6, 304, 719
AclWI GGATC 1 cut(s) 645
AcvI CACGTG 1 cut(s) 158
AfaI GTAC 2 cut(s) 42, 329
AflIII ACRYGT 1 cut(s) 157
AgeI ACCGGT 1 cut(s) 247
AgsI TTSAA 1 cut(s) 765
AluBI AGCT 2 cut(s) 463, 568
AluI AGCT 2 cut(s) 463, 568
Alw26I GTCTC 1 cut(s) 681
AlwI GGATC 1 cut(s) 645
AoxI GGCC 1 cut(s) 282
ApeKI GCWGC 1 cut(s) 367
ArsI GACNNNNNNTTYG 2 cut(s) 101, 133
AsiGI ACCGGT 1 cut(s) 247
AspLEI GCGC 1 cut(s) 186
AspS9I GGNCC 3 cut(s) 78, 282, 716
AsuC2I CCSGG 1 cut(s) 472
AsuHPI GGTGA 1 cut(s) 85
AvaII GGWCC 2 cut(s) 78, 716
BaeGI GKGCMC 1 cut(s) 472
BanI GGYRCC 1 cut(s) 467
BauI CACGAG 1 cut(s) 600
BbrPI CACGTG 1 cut(s) 158
BbvI GCAGC 1 cut(s) 379
BccI CCATC 2 cut(s) 104, 637
BcnI CCSGG 1 cut(s) 472
BcoDI GTCTC 1 cut(s) 681
BfaI CTAG 1 cut(s) 387
BisI GCNGC 2 cut(s) 304, 368
BlsI GCNGC 2 cut(s) 305, 369
BmcAI AGTACT 1 cut(s) 42
Bme1390I CCNGG 1 cut(s) 472
Bme18I GGWCC 2 cut(s) 78, 716
BmgT120I GGNCC 3 cut(s) 78, 282, 716
BmiI GGNNCC 2 cut(s) 79, 469
BmrFI CCNGG 1 cut(s) 472
BmsI GCATC 2 cut(s) 195, 262
BplI GAGNNNNNCTC 2 cut(s) 392, 424
BpuEI CTTGAG 1 cut(s) 65
BpuMI CCSGG 1 cut(s) 472
BsaAI YACGTR 1 cut(s) 158
BsaJI CCNNGG 2 cut(s) 331, 633
BsaWI WCCGGW 1 cut(s) 247
Bse118I RCCGGY 3 cut(s) 247, 284, 643
Bse1I ACTGG 1 cut(s) 423
Bse3DI GCAATG 2 cut(s) 111, 375
BseDI CCNNGG 2 cut(s) 331, 633
BseGI GGATG 2 cut(s) 186, 629
BseMI GCAATG 2 cut(s) 111, 375
BseNI ACTGG 1 cut(s) 423
BseRI GAGGAG 2 cut(s) 747, 772
BseSI GKGCMC 1 cut(s) 472
BseXI GCAGC 1 cut(s) 379
BshFI GGCC 1 cut(s) 284
BshNI GGYRCC 1 cut(s) 467
BshTI ACCGGT 1 cut(s) 247
BsiSI CCGG 5 cut(s) 248, 285, 472, 644, 696
BslFI GGGAC 1 cut(s) 276
BsmAI GTCTC 1 cut(s) 681
BsmFI GGGAC 1 cut(s) 276
BsnI GGCC 1 cut(s) 284
Bsp1286I GDGCHC 1 cut(s) 472
Bsp143I GATC 1 cut(s) 637
BspACI CCGC 3 cut(s) 6, 304, 719
BspANI GGCC 1 cut(s) 284
BspLI GGNNCC 2 cut(s) 79, 469
BspPI GGATC 1 cut(s) 645
BspT107I GGYRCC 1 cut(s) 467
BsrBI CCGCTC 1 cut(s) 306
BsrDI GCAATG 2 cut(s) 111, 375
BsrFI RCCGGY 3 cut(s) 247, 284, 643
BsrI ACTGG 1 cut(s) 423
BssAI RCCGGY 3 cut(s) 247, 284, 643
BssECI CCNNGG 2 cut(s) 331, 633
BssMI GATC 1 cut(s) 637
BssSI CACGAG 1 cut(s) 600
BssT1I CCWWGG 1 cut(s) 633
Bst2BI CACGAG 1 cut(s) 600
Bst4CI ACNGT 1 cut(s) 228
BstBAI YACGTR 1 cut(s) 158
BstC8I GCNNGC 5 cut(s) 152, 286, 382, 550, 645
BstDEI CTNAG 3 cut(s) 9, 509, 660
BstF5I GGATG 2 cut(s) 186, 629
BstHHI GCGC 1 cut(s) 186
BstKTI GATC 1 cut(s) 640
BstMAI GTCTC 1 cut(s) 681
BstMBI GATC 1 cut(s) 637
BstMWI GCNNNNNNNGC 4 cut(s) 260, 281, 565, 661
BstSCI CCNGG 1 cut(s) 470
BstSLI GKGCMC 1 cut(s) 472
BstV1I GCAGC 1 cut(s) 379
BsuRI GGCC 1 cut(s) 284
BtsCI GGATG 2 cut(s) 186, 629
BtsIMutI CAGTG 2 cut(s) 27, 430
Cac8I GCNNGC 5 cut(s) 152, 286, 382, 550, 645
CfoI GCGC 1 cut(s) 186
Cfr10I RCCGGY 3 cut(s) 247, 284, 643
Cfr13I GGNCC 3 cut(s) 78, 282, 716
CseI GACGC 1 cut(s) 230
Csp6I GTAC 2 cut(s) 41, 328
CspAI ACCGGT 1 cut(s) 247
CviAII CATG 4 cut(s) 23, 218, 419, 545
CviQI GTAC 2 cut(s) 41, 328
DdeI CTNAG 3 cut(s) 9, 509, 660
DpnI GATC 1 cut(s) 639
DpnII GATC 1 cut(s) 637
Eco130I CCWWGG 1 cut(s) 633
Eco47I GGWCC 2 cut(s) 78, 716
Eco72I CACGTG 1 cut(s) 158
EcoO109I RGGNCCY 1 cut(s) 78
EcoT14I CCWWGG 1 cut(s) 633
ErhI CCWWGG 1 cut(s) 633
FaeI CATG 4 cut(s) 26, 221, 422, 548
FalI AAGNNNNNCTT 4 cut(s) 195, 227, 502, 534
FaqI GGGAC 1 cut(s) 276
FatI CATG 4 cut(s) 22, 217, 418, 544
Fnu4HI GCNGC 2 cut(s) 304, 368
FokI GGATG 2 cut(s) 173, 616
Fsp4HI GCNGC 2 cut(s) 304, 368
FspBI CTAG 1 cut(s) 387
GlaI GCGC 1 cut(s) 185
GluI GCNGC 2 cut(s) 304, 368
HaeIII GGCC 1 cut(s) 284
HapII CCGG 5 cut(s) 248, 285, 472, 644, 696
HgaI GACGC 1 cut(s) 230
HhaI GCGC 1 cut(s) 186
Hin1II CATG 4 cut(s) 26, 221, 422, 548
Hin6I GCGC 1 cut(s) 184
HinP1I GCGC 1 cut(s) 184
HincII GTYRAC 2 cut(s) 127, 245
HindII GTYRAC 2 cut(s) 127, 245
HinfI GANTC 4 cut(s) 395, 475, 748, 777
HpaI GTTAAC 1 cut(s) 127
HpaII CCGG 5 cut(s) 248, 285, 472, 644, 696
HphI GGTGA 1 cut(s) 85
Hpy166II GTNNAC 6 cut(s) 68, 127, 224, 231, 245, 328
Hpy188I TCNGA 3 cut(s) 16, 271, 400
Hpy188III TCNNGA 2 cut(s) 587, 714
Hpy8I GTNNAC 6 cut(s) 68, 127, 224, 231, 245, 328
HpyAV CCTTC 2 cut(s) 200, 771
HpyCH4III ACNGT 1 cut(s) 228
HpyCH4IV ACGT 1 cut(s) 157
HpyCH4V TGCA 4 cut(s) 85, 122, 515, 548
HpyF10VI GCNNNNNNNGC 4 cut(s) 260, 281, 565, 661
HpyF3I CTNAG 3 cut(s) 9, 509, 660
HpySE526I ACGT 1 cut(s) 157
Hsp92II CATG 4 cut(s) 26, 221, 422, 548
HspAI GCGC 1 cut(s) 184
KroI GCCGGC 2 cut(s) 284, 643
KroNI GCCGGC 2 cut(s) 286, 645
KspAI GTTAAC 1 cut(s) 127
Kzo9I GATC 1 cut(s) 637
Lsp1109I GCAGC 1 cut(s) 379
LweI GCATC 2 cut(s) 195, 262
MaeI CTAG 1 cut(s) 387
MaeII ACGT 1 cut(s) 157
MaeIII GTNAC 1 cut(s) 492
MalI GATC 1 cut(s) 639
MbiI CCGCTC 1 cut(s) 306
MboI GATC 1 cut(s) 637
MboII GAAGA 1 cut(s) 677
MhlI GDGCHC 1 cut(s) 472
MluCI AATT 1 cut(s) 140
MlyI GAGTC 1 cut(s) 404
MnlI CCTC 6 cut(s) 29, 341, 353, 723, 768, 793
MroNI GCCGGC 2 cut(s) 284, 643
MseI TTAA 2 cut(s) 126, 741
MslI CAYNNNNRTG 1 cut(s) 423
MspI CCGG 5 cut(s) 248, 285, 472, 644, 696
MspR9I CCNGG 1 cut(s) 472
MwoI GCNNNNNNNGC 4 cut(s) 260, 281, 565, 661
NaeI GCCGGC 2 cut(s) 286, 645
NciI CCSGG 1 cut(s) 472
NdeII GATC 1 cut(s) 637
NgoMIV GCCGGC 2 cut(s) 284, 643
NlaIII CATG 4 cut(s) 26, 221, 422, 548
NlaIV GGNNCC 2 cut(s) 79, 469
NmeAIII GCCGAG 1 cut(s) 418
PdiI GCCGGC 2 cut(s) 286, 645
PfeI GAWTC 3 cut(s) 475, 748, 777
PinAI ACCGGT 1 cut(s) 247
PkrI GCNGC 2 cut(s) 305, 369
PleI GAGTC 1 cut(s) 403
PmaCI CACGTG 1 cut(s) 158
PmlI CACGTG 1 cut(s) 158
PpsI GAGTC 1 cut(s) 403
Ppu21I YACGTR 1 cut(s) 158
PpuMI RGGWCCY 1 cut(s) 78
Psp5II RGGWCCY 1 cut(s) 78
PspCI CACGTG 1 cut(s) 158
PspN4I GGNNCC 2 cut(s) 79, 469
PspPI GGNCC 3 cut(s) 78, 282, 716
PspPPI RGGWCCY 1 cut(s) 78
RsaI GTAC 2 cut(s) 42, 329
RsaNI GTAC 2 cut(s) 41, 328
RseI CAYNNNNRTG 1 cut(s) 423
SaqAI TTAA 2 cut(s) 126, 741
SatI GCNGC 2 cut(s) 304, 368
Sau3AI GATC 1 cut(s) 637
Sau96I GGNCC 3 cut(s) 78, 282, 716
ScaI AGTACT 1 cut(s) 42
SchI GAGTC 1 cut(s) 404
ScrFI CCNGG 1 cut(s) 472
SduI GDGCHC 1 cut(s) 472
SetI ASST 7 cut(s) 21, 160, 333, 345, 465, 570, 597
SfaNI GCATC 2 cut(s) 195, 262
SinI GGWCC 2 cut(s) 78, 716
SmiMI CAYNNNNRTG 1 cut(s) 423
SmlI CTYRAG 1 cut(s) 44
SmoI CTYRAG 1 cut(s) 44
Sse9I AATT 1 cut(s) 140
SsiI CCGC 3 cut(s) 6, 304, 719
SspMI CTAG 1 cut(s) 387
StyD4I CCNGG 1 cut(s) 470
StyI CCWWGG 1 cut(s) 633
TaaI ACNGT 1 cut(s) 228
TaiI ACGT 1 cut(s) 160
TasI AATT 1 cut(s) 140
TatI WGTACW 1 cut(s) 40
TauI GCSGC 1 cut(s) 306
TfiI GAWTC 3 cut(s) 475, 748, 777
Tru1I TTAA 2 cut(s) 126, 741
Tru9I TTAA 2 cut(s) 126, 741
TscAI CASTG 2 cut(s) 34, 430
TseI GCWGC 1 cut(s) 367
TspDTI ATGAA 2 cut(s) 533, 613
TspGWI ACGGA 2 cut(s) 53, 698
TspRI CASTG 2 cut(s) 34, 430
VpaK11BI GGWCC 2 cut(s) 78, 716
XspI CTAG 1 cut(s) 387
ZrmI AGTACT 1 cut(s) 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.