RchiOBHm_Chr7g0180521

Mitochondrial protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0003077
Physical Location & Seq
Forward (+)
2429214 .. 2430332
1119 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ16098

Sequence Viewer

Length: 1119 bp
ATGCGTACTTTTCTTTTATCTATTGGCTTCGTTCAAAGTATTGCAGATTCCTCCTTGTTCATTTATCGTCAAGGGGTTCACACAATTTATTTCCTACTCTATGTTGATGATATTGTGGTGACGGGTAGCAATGATCAGCTTATGCAAAGTTTTATTGATACTCTTGGCCGTGGTTTTGACATCAAGGATTTAGGTCCTCTCCATTATTTCCTTGGTTTACAAGTCACTCCTCATTCTCATGGGCTACACATCAATCAAATTAAGTATGCTCATGATCTGCTCTCCAAGCACGATCTCTTACTCAGTAAGCCTGTGAGTACACCAATGTCTGCTAAGTCTGACCTCCATGCCACTGATAGTATAGTCCTTGACAACCCTACCACATTCCGTGAACTTGTTGGGTCCTTGCAATATCTCACCATCACACGTCCTGACATTGCCTTTGCCGTTAACACGATTTCACAATTTATGAGCCAGCCACGTGTGTCTCATCTTGTAGCTGTCAAACGCATCCTTCGTTACATCAAAGGCACTCTTGGTCATGGTCTACTGTTCACACCACAGCATCAACCGGTTACTCTTTCTGCCTACTCTGATGCTGATTGGGCCGGCTGTCCCATCACTCGTCGCTCAACATCTGGCTATCTTGTATACCTTGGTTCTAATCTCATCTCTTGGTGTTCTAAAAAGCAGCCTACCATTGCTCGCTCTAGTGCCGAGTCCGAGTATCGCTCTCTTGCCCATGCCAGTGCCGAAACAACTTGGTTGGGATATTTACTATATGAGCTTGGTGCTCGGATACAGTTCCCCATTTTGTTACATTGTGATAATCTGAGTGCCACTTATATGGCTTCCAATCCTGTTTTTCATGCACGCACCAAGCACATTGAGCTCGATTACCACTATGTTCGCGAAAAGGTTGCTCGTGGTAGTCATCGAGTTTGTTTCATTCCATCCAAGGACCAGCCGGCGGATTTACTCACTAAGCCACTTCACAAGTCTCGCCATCTTCTCTTTTCCGACAAACTTGTCCGTCCAGGACCGCCAAGTTTGAGGGGGGCTGTTAGAGAGAATCAATCTTCTCATCCAATCATACCCAGAATCTCCTCCATTAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_2 gag_pre-integrs

Protein Analysis

372

Amino Acids

41.76

Weight (kDa)

9.38

Isoelectric Point (pI)

38.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_2 PF07727 3 - 110 6.5e-16 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1028
AccI GTMKAC 2 cut(s) 547, 651
AccII CGCG 1 cut(s) 912
AciI CCGC 2 cut(s) 971, 1043
AcoI YGGCCR 1 cut(s) 166
AcvI CACGTG 1 cut(s) 482
AfaI GTAC 2 cut(s) 7, 319
AfiI CCNNNNNNNGG 1 cut(s) 970
AflIII ACRYGT 2 cut(s) 425, 481
AgeI ACCGGT 1 cut(s) 571
AgsI TTSAA 1 cut(s) 35
AjiI CACGTC 1 cut(s) 428
AjnI CCWGG 1 cut(s) 1036
AluBI AGCT 4 cut(s) 139, 500, 787, 892
AluI AGCT 4 cut(s) 139, 500, 787, 892
Alw21I GWGCWC 2 cut(s) 796, 894
Alw26I GTCTC 2 cut(s) 492, 1005
AoxI GGCC 2 cut(s) 166, 606
ApeKI GCWGC 1 cut(s) 691
ArsI GACNNNNNNTTYG 2 cut(s) 425, 457
AsiGI ACCGGT 1 cut(s) 571
AspS9I GGNCC 5 cut(s) 194, 402, 606, 961, 1040
AsuHPI GGTGA 2 cut(s) 130, 409
AvaII GGWCC 4 cut(s) 194, 402, 961, 1040
BanII GRGCYC 1 cut(s) 894
BauI CACGAG 1 cut(s) 924
BbrPI CACGTG 1 cut(s) 482
Bbv12I GWGCWC 2 cut(s) 796, 894
BbvI GCAGC 1 cut(s) 703
BccI CCATC 4 cut(s) 428, 626, 961, 1014
BceAI ACGGC 2 cut(s) 153, 431
BcgI CGANNNNNNTGC 2 cut(s) 902, 936
BciT130I CCWGG 1 cut(s) 1038
BciVI GTATCC 1 cut(s) 792
BclI TGATCA 1 cut(s) 133
BcoDI GTCTC 2 cut(s) 492, 1005
BfaI CTAG 1 cut(s) 711
BfuI GTATCC 1 cut(s) 792
BisI GCNGC 1 cut(s) 692
BlsI GCNGC 1 cut(s) 693
Bme1390I CCNGG 1 cut(s) 1038
Bme18I GGWCC 4 cut(s) 194, 402, 961, 1040
BmgBI CACGTC 1 cut(s) 428
BmgT120I GGNCC 5 cut(s) 194, 402, 606, 961, 1040
BmiI GGNNCC 1 cut(s) 403
BmrFI CCNGG 1 cut(s) 1038
BmsI GCATC 3 cut(s) 519, 574, 586
BplI GAGNNNNNCTC 2 cut(s) 716, 748
BsaAI YACGTR 1 cut(s) 482
BsaJI CCNNGG 4 cut(s) 169, 211, 655, 957
BsaWI WCCGGW 1 cut(s) 571
Bsc4I CCNNNNNNNGG 1 cut(s) 970
Bse118I RCCGGY 3 cut(s) 571, 608, 967
Bse1I ACTGG 1 cut(s) 747
Bse3DI GCAATG 3 cut(s) 136, 435, 699
BseBI CCWGG 1 cut(s) 1038
BseDI CCNNGG 4 cut(s) 169, 211, 655, 957
BseGI GGATG 3 cut(s) 510, 953, 1084
BseLI CCNNNNNNNGG 1 cut(s) 970
BseMI GCAATG 3 cut(s) 136, 435, 699
BseMII CTCAG 2 cut(s) 316, 824
BseNI ACTGG 1 cut(s) 747
BseRI GAGGAG 2 cut(s) 219, 1096
BseXI GCAGC 1 cut(s) 703
Bsh1236I CGCG 1 cut(s) 912
BshFI GGCC 2 cut(s) 168, 608
BshTI ACCGGT 1 cut(s) 571
BsiHKAI GWGCWC 2 cut(s) 796, 894
BsiSI CCGG 3 cut(s) 572, 609, 968
BslFI GGGAC 1 cut(s) 600
BslI CCNNNNNNNGG 1 cut(s) 970
BsmAI GTCTC 2 cut(s) 492, 1005
BsmFI GGGAC 1 cut(s) 600
BsnI GGCC 2 cut(s) 168, 608
Bsp1286I GDGCHC 2 cut(s) 796, 894
Bsp143I GATC 3 cut(s) 133, 274, 292
Bsp68I TCGCGA 1 cut(s) 912
BspACI CCGC 2 cut(s) 971, 1043
BspANI GGCC 2 cut(s) 168, 608
BspCNI CTCAG 2 cut(s) 315, 825
BspFNI CGCG 1 cut(s) 912
BspHI TCATGA 1 cut(s) 271
BspLI GGNNCC 1 cut(s) 403
BsrDI GCAATG 3 cut(s) 136, 435, 699
BsrFI RCCGGY 3 cut(s) 571, 608, 967
BsrI ACTGG 1 cut(s) 747
BssAI RCCGGY 3 cut(s) 571, 608, 967
BssECI CCNNGG 4 cut(s) 169, 211, 655, 957
BssMI GATC 3 cut(s) 133, 274, 292
BssNAI GTATAC 1 cut(s) 652
BssSI CACGAG 1 cut(s) 924
BssT1I CCWWGG 3 cut(s) 211, 655, 957
Bst1107I GTATAC 1 cut(s) 652
Bst2BI CACGAG 1 cut(s) 924
Bst2UI CCWGG 1 cut(s) 1038
Bst4CI ACNGT 2 cut(s) 552, 804
BstBAI YACGTR 1 cut(s) 482
BstC8I GCNNGC 5 cut(s) 476, 610, 706, 874, 969
BstDEI CTNAG 4 cut(s) 302, 333, 833, 984
BstDSI CCRYGG 1 cut(s) 169
BstF5I GGATG 3 cut(s) 510, 953, 1084
BstFNI CGCG 1 cut(s) 912
BstKTI GATC 3 cut(s) 136, 277, 295
BstMAI GTCTC 2 cut(s) 492, 1005
BstMBI GATC 3 cut(s) 133, 274, 292
BstMWI GCNNNNNNNGC 3 cut(s) 286, 605, 889
BstNI CCWGG 1 cut(s) 1038
BstSCI CCNGG 1 cut(s) 1036
BstUI CGCG 1 cut(s) 912
BstV1I GCAGC 1 cut(s) 703
BstXI CCANNNNNNTGG 1 cut(s) 847
BstZ17I GTATAC 1 cut(s) 652
BsuI GTATCC 1 cut(s) 792
BsuRI GGCC 2 cut(s) 168, 608
BtgI CCRYGG 1 cut(s) 169
BtrI CACGTC 1 cut(s) 428
BtsCI GGATG 3 cut(s) 510, 953, 1084
BtsIMutI CAGTG 2 cut(s) 351, 754
BtuMI TCGCGA 1 cut(s) 912
Cac8I GCNNGC 5 cut(s) 476, 610, 706, 874, 969
CciI TCATGA 1 cut(s) 271
Cfr10I RCCGGY 3 cut(s) 571, 608, 967
Cfr13I GGNCC 5 cut(s) 194, 402, 606, 961, 1040
Csp6I GTAC 2 cut(s) 6, 318
CspAI ACCGGT 1 cut(s) 571
CviAII CATG 6 cut(s) 239, 272, 347, 542, 743, 869
CviQI GTAC 2 cut(s) 6, 318
DdeI CTNAG 4 cut(s) 302, 333, 833, 984
DpnI GATC 3 cut(s) 135, 276, 294
DpnII GATC 3 cut(s) 133, 274, 292
DrdI GACNNNNNNGTC 1 cut(s) 1028
DseDI GACNNNNNNGTC 1 cut(s) 1028
EaeI YGGCCR 1 cut(s) 166
EciI GGCGGA 1 cut(s) 986
Ecl136II GAGCTC 1 cut(s) 892
Eco130I CCWWGG 3 cut(s) 211, 655, 957
Eco24I GRGCYC 1 cut(s) 894
Eco47I GGWCC 4 cut(s) 194, 402, 961, 1040
Eco53kI GAGCTC 1 cut(s) 892
Eco72I CACGTG 1 cut(s) 482
EcoICRI GAGCTC 1 cut(s) 892
EcoO109I RGGNCCY 2 cut(s) 194, 402
EcoRII CCWGG 1 cut(s) 1036
EcoT14I CCWWGG 3 cut(s) 211, 655, 957
EcoT38I GRGCYC 1 cut(s) 894
ErhI CCWWGG 3 cut(s) 211, 655, 957
FaeI CATG 6 cut(s) 242, 275, 350, 545, 746, 872
FalI AAGNNNNNCTT 2 cut(s) 519, 551
FaqI GGGAC 1 cut(s) 600
FatI CATG 6 cut(s) 238, 271, 346, 541, 742, 868
FbaI TGATCA 1 cut(s) 133
FblI GTMKAC 2 cut(s) 547, 651
Fnu4HI GCNGC 1 cut(s) 692
FokI GGATG 3 cut(s) 497, 940, 1071
FriOI GRGCYC 1 cut(s) 894
Fsp4HI GCNGC 1 cut(s) 692
FspBI CTAG 1 cut(s) 711
GluI GCNGC 1 cut(s) 692
HaeIII GGCC 2 cut(s) 168, 608
HapII CCGG 3 cut(s) 572, 609, 968
Hin1II CATG 6 cut(s) 242, 275, 350, 545, 746, 872
HincII GTYRAC 1 cut(s) 451
HindII GTYRAC 1 cut(s) 451
HinfI GANTC 4 cut(s) 47, 719, 1072, 1101
HpaI GTTAAC 1 cut(s) 451
HpaII CCGG 3 cut(s) 572, 609, 968
HphI GGTGA 2 cut(s) 130, 409
Hpy166II GTNNAC 8 cut(s) 79, 218, 320, 392, 451, 548, 555, 652
Hpy188I TCNGA 6 cut(s) 340, 595, 724, 798, 834, 1021
Hpy188III TCNNGA 3 cut(s) 272, 431, 911
Hpy8I GTNNAC 8 cut(s) 79, 218, 320, 392, 451, 548, 555, 652
Hpy99I CGWCG 1 cut(s) 630
HpyAV CCTTC 1 cut(s) 524
HpyCH4III ACNGT 2 cut(s) 552, 804
HpyCH4IV ACGT 2 cut(s) 427, 481
HpyCH4V TGCA 4 cut(s) 44, 145, 409, 872
HpyF10VI GCNNNNNNNGC 3 cut(s) 286, 605, 889
HpyF3I CTNAG 4 cut(s) 302, 333, 833, 984
HpySE526I ACGT 2 cut(s) 427, 481
Hsp92II CATG 6 cut(s) 242, 275, 350, 545, 746, 872
KroI GCCGGC 2 cut(s) 608, 967
KroNI GCCGGC 2 cut(s) 610, 969
Ksp22I TGATCA 1 cut(s) 133
KspAI GTTAAC 1 cut(s) 451
Kzo9I GATC 3 cut(s) 133, 274, 292
Lsp1109I GCAGC 1 cut(s) 703
LweI GCATC 3 cut(s) 519, 574, 586
MaeI CTAG 1 cut(s) 711
MaeII ACGT 2 cut(s) 427, 481
MaeIII GTNAC 5 cut(s) 118, 223, 518, 574, 816
MalI GATC 3 cut(s) 135, 276, 294
MboI GATC 3 cut(s) 133, 274, 292
MboII GAAGA 2 cut(s) 1001, 1071
MhlI GDGCHC 2 cut(s) 796, 894
MluCI AATT 3 cut(s) 84, 258, 464
MlyI GAGTC 1 cut(s) 728
MmeI TCCRAC 1 cut(s) 1044
MnlI CCTC 6 cut(s) 61, 207, 240, 353, 1047, 1117
MroNI GCCGGC 2 cut(s) 608, 967
MseI TTAA 3 cut(s) 261, 450, 1113
MslI CAYNNNNRTG 3 cut(s) 237, 747, 845
MspI CCGG 3 cut(s) 572, 609, 968
MspR9I CCNGG 1 cut(s) 1038
MvaI CCWGG 1 cut(s) 1038
MvnI CGCG 1 cut(s) 912
MwoI GCNNNNNNNGC 3 cut(s) 286, 605, 889
NaeI GCCGGC 2 cut(s) 610, 969
NdeII GATC 3 cut(s) 133, 274, 292
NgoMIV GCCGGC 2 cut(s) 608, 967
NlaIII CATG 6 cut(s) 242, 275, 350, 545, 746, 872
NlaIV GGNNCC 1 cut(s) 403
NmeAIII GCCGAG 1 cut(s) 742
NmuCI GTSAC 2 cut(s) 118, 223
NruI TCGCGA 1 cut(s) 912
PagI TCATGA 1 cut(s) 271
PcsI WCGNNNNNNNCGW 1 cut(s) 514
PdiI GCCGGC 2 cut(s) 610, 969
PfeI GAWTC 3 cut(s) 47, 1072, 1101
PfoI TCCNGGA 1 cut(s) 1036
PinAI ACCGGT 1 cut(s) 571
PkrI GCNGC 1 cut(s) 693
PleI GAGTC 1 cut(s) 727
PmaCI CACGTG 1 cut(s) 482
PmlI CACGTG 1 cut(s) 482
PpsI GAGTC 1 cut(s) 727
Ppu21I YACGTR 1 cut(s) 482
PpuMI RGGWCCY 2 cut(s) 194, 402
Psp124BI GAGCTC 1 cut(s) 894
Psp5II RGGWCCY 2 cut(s) 194, 402
Psp6I CCWGG 1 cut(s) 1036
PspCI CACGTG 1 cut(s) 482
PspGI CCWGG 1 cut(s) 1036
PspN4I GGNNCC 1 cut(s) 403
PspPI GGNCC 5 cut(s) 194, 402, 606, 961, 1040
PspPPI RGGWCCY 2 cut(s) 194, 402
RruI TCGCGA 1 cut(s) 912
RsaI GTAC 2 cut(s) 7, 319
RsaNI GTAC 2 cut(s) 6, 318
RseI CAYNNNNRTG 3 cut(s) 237, 747, 845
SacI GAGCTC 1 cut(s) 894
SaqAI TTAA 3 cut(s) 261, 450, 1113
SatI GCNGC 1 cut(s) 692
Sau3AI GATC 3 cut(s) 133, 274, 292
Sau96I GGNCC 5 cut(s) 194, 402, 606, 961, 1040
SchI GAGTC 1 cut(s) 728
ScrFI CCNGG 1 cut(s) 1038
SduI GDGCHC 2 cut(s) 796, 894
SfaNI GCATC 3 cut(s) 519, 574, 586
SinI GGWCC 4 cut(s) 194, 402, 961, 1040
SmiMI CAYNNNNRTG 3 cut(s) 237, 747, 845
Sse9I AATT 3 cut(s) 84, 258, 464
SsiI CCGC 2 cut(s) 971, 1043
SspMI CTAG 1 cut(s) 711
SstI GAGCTC 1 cut(s) 894
StyD4I CCNGG 1 cut(s) 1036
StyI CCWWGG 3 cut(s) 211, 655, 957
TaaI ACNGT 2 cut(s) 552, 804
TaiI ACGT 2 cut(s) 430, 484
TaqI TCGA 2 cut(s) 894, 937
TasI AATT 3 cut(s) 84, 258, 464
TatI WGTACW 1 cut(s) 317
TfiI GAWTC 3 cut(s) 47, 1072, 1101
Tru1I TTAA 3 cut(s) 261, 450, 1113
Tru9I TTAA 3 cut(s) 261, 450, 1113
TscAI CASTG 2 cut(s) 358, 754
TseFI GTSAC 2 cut(s) 118, 223
TseI GCWGC 1 cut(s) 691
Tsp45I GTSAC 2 cut(s) 118, 223
TspDTI ATGAA 3 cut(s) 49, 857, 937
TspGWI ACGGA 2 cut(s) 377, 1022
TspRI CASTG 2 cut(s) 358, 754
VpaK11BI GGWCC 4 cut(s) 194, 402, 961, 1040
XcmI CCANNNNNNNNNTGG 1 cut(s) 209
XmiI GTMKAC 2 cut(s) 547, 651
XspI CTAG 1 cut(s) 711
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.