Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003077

Physical Location & Seq

Genomic Coordinates Forward (+)

34744590 .. 34745420

Gene Structure 831 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ38182

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGTCGGCAAAGGCAGTCCTCACCACACATGATGGTGATCTTCTTGAAAATCCAACTGCCTTTCATGAGATGGTTGGCTCCTTGCAGTACCTAACCATTACACGCCCTGACATCGCCTTTGCGGTCAATTCTGTGTCACAATTCATGAGTCAACCTCGTGCTCCACATCTCATTGCAGCCAAACGTATTCTCCGCTATGTCAAAAGCACACTAGGCCATGGTCTCCATTTTAGTCCTCAACGCCAACCTGCCCACCTTTCTGCTTACTCTGATGCCGATTGGGCCGGCTGCCCAGAATCTCGCCGTTCCACTTCCGGCTATCTCATTTACCTTGGCAATACCCTTGTCTCTTGGTGTTCCAAAAAGCAACCTACCATTGCTCGCTCCAGTGCCGAATCTGAATATCGATCCCTTGCTCATTCCAGTGCCGAGACAACTTGGTTAGGCTTCTTACTATATGAACTTGGTGTCCATATTCAGTACCCCATTCGGCGTTACTGTGATAACCTAAGTGCCACATACATGGCTTCTAATCCGGTCTTTCACGCTCGCACCAAGCACATCGAGTTAGATTATCACTTTGTTCGTGAAAAGGTAGCACTTGGGAGTCATCAGGTTCATTTTGTCCCTTCCGTCAATCAACCAGCTGATCTTCTTACTAAACCACTTCACAAGCAGCGGCATAATCTCCTGTGTACCAAACTTGTGCGTCCTAAGCCGCCCAGTTTGAAGGGGGGTGTTAGAGCAAATCACTCTCCTACATTGATTTCCTCCCTCTCCACAATCAAAACTGAATGTGTAACCTCTCCACAATCAAAACTGATTGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_2 Retrotran_gag_2 gag_pre-integrs

Protein Analysis

276

Amino Acids

30.78

Weight (kDa)

9.59

Isoelectric Point (pI)

56.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003077)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATMG00810
fragaria_vesca	FvH4_3g08011 FvH4_5g11221 FvH4_6g11491 FvH4_6g53931 FvH4_6g53931 FvH4_6g53931 FvH4_6g53931
rosa_chinensis	RchiOBHm_Chr1g0347991 RchiOBHm_Chr1g0348001 RchiOBHm_Chr1g0350631 RchiOBHm_Chr2g0100361 RchiOBHm_Chr2g0102931 RchiOBHm_Chr2g0122981 RchiOBHm_Chr2g0124571 RchiOBHm_Chr2g0134981 RchiOBHm_Chr4g0410941 RchiOBHm_Chr4g0410951 RchiOBHm_Chr5g0026511 RchiOBHm_Chr5g0078261 RchiOBHm_Chr5g0082731 RchiOBHm_Chr6g0261771 RchiOBHm_Chr6g0261781 RchiOBHm_Chr6g0276521 RchiOBHm_Chr6g0310171 RchiOBHm_Chr7g0180521 RchiOBHm_Chr7g0182281 RchiOBHm_Chr7g0231781 RchiOBHm_Chr7g0231971
rosa_roxburghii	Rroxscaffold_3G00242950
rosa_wichuraiana	Rw0G003700 Rw0G012710 Rw4G014500 Rw4G035380 Rw5G003190 Rw5G018810 Rw7G035270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	256
AciI	CCGC	4 cut(s)	122, 193, 679, 719
AclWI	GGATC	1 cut(s)	402
AfaI	GTAC	3 cut(s)	89, 482, 697
AgsI	TTSAA	2 cut(s)	47, 730
AloI	GAACNNNNNNTCC	2 cut(s)	453, 485
AluBI	AGCT	1 cut(s)	647
AluI	AGCT	1 cut(s)	647
Alw21I	GWGCWC	1 cut(s)	163
Alw26I	GTCTC	3 cut(s)	227, 352, 425
AlwI	GGATC	1 cut(s)	402
AoxI	GGCC	2 cut(s)	214, 282
ApeKI	GCWGC	3 cut(s)	176, 288, 676
ArsI	GACNNNNNNTTYG	2 cut(s)	101, 133
AspS9I	GGNCC	1 cut(s)	282
AsuHPI	GGTGA	2 cut(s)	13, 47
BauI	CACGAG	1 cut(s)	156
Bbv12I	GWGCWC	1 cut(s)	163
BbvI	GCAGC	3 cut(s)	188, 275, 688
BccI	CCATC	2 cut(s)	26, 64
BceAI	ACGGC	1 cut(s)	288
BcoDI	GTCTC	3 cut(s)	227, 352, 425
BfaI	CTAG	1 cut(s)	212
BfuAI	ACCTGC	1 cut(s)	256
BglI	GCCNNNNNGGC	1 cut(s)	281
BisI	GCNGC	5 cut(s)	177, 289, 677, 680, 719
BlsI	GCNGC	5 cut(s)	178, 290, 678, 681, 720
BmgT120I	GGNCC	1 cut(s)	282
BmiI	GGNNCC	1 cut(s)	79
BmrI	ACTGGG	1 cut(s)	717
BmsI	GCATC	1 cut(s)	262
BmuI	ACTGGG	1 cut(s)	717
BplI	GAGNNNNNCTC	2 cut(s)	139, 171
BpmI	CTGGAG	1 cut(s)	370
Bpu10I	CCTNAGC	1 cut(s)	714
Bsa29I	ATCGAT	1 cut(s)	406
BsaBI	GATNNNNATC	1 cut(s)	36
BsaI	GGTCTC	1 cut(s)	227
BsaJI	CCNNGG	2 cut(s)	217, 331
BsaWI	WCCGGW	1 cut(s)	535
BsaXI	ACNNNNNCTCC	2 cut(s)	174, 204
Bse118I	RCCGGY	1 cut(s)	284
Bse1I	ACTGG	3 cut(s)	387, 423, 723
Bse3DI	GCAATG	2 cut(s)	171, 375
Bse8I	GATNNNNATC	1 cut(s)	36
BseCI	ATCGAT	1 cut(s)	406
BseDI	CCNNGG	2 cut(s)	217, 331
BseJI	GATNNNNATC	1 cut(s)	36
BseMI	GCAATG	2 cut(s)	171, 375
BseNI	ACTGG	3 cut(s)	387, 423, 723
BseXI	GCAGC	3 cut(s)	188, 275, 688
BshFI	GGCC	2 cut(s)	216, 284
BshVI	ATCGAT	1 cut(s)	406
BsiHKAI	GWGCWC	1 cut(s)	163
BsiSI	CCGG	3 cut(s)	285, 315, 536
BslFI	GGGAC	1 cut(s)	611
BsmAI	GTCTC	3 cut(s)	227, 352, 425
BsmFI	GGGAC	1 cut(s)	611
BsnI	GGCC	2 cut(s)	216, 284
Bso31I	GGTCTC	1 cut(s)	227
Bsp1286I	GDGCHC	1 cut(s)	163
Bsp143I	GATC	3 cut(s)	37, 407, 649
Bsp19I	CCATGG	1 cut(s)	217
BspACI	CCGC	4 cut(s)	122, 193, 679, 719
BspANI	GGCC	2 cut(s)	216, 284
BspDI	ATCGAT	1 cut(s)	406
BspHI	TCATGA	2 cut(s)	64, 144
BspLI	GGNNCC	1 cut(s)	79
BspMI	ACCTGC	1 cut(s)	256
BspPI	GGATC	1 cut(s)	402
BspTNI	GGTCTC	1 cut(s)	227
BsrDI	GCAATG	2 cut(s)	171, 375
BsrFI	RCCGGY	1 cut(s)	284
BsrI	ACTGG	3 cut(s)	387, 423, 723
BssAI	RCCGGY	1 cut(s)	284
BssECI	CCNNGG	2 cut(s)	217, 331
BssMI	GATC	3 cut(s)	37, 407, 649
BssSI	CACGAG	1 cut(s)	156
BssT1I	CCWWGG	2 cut(s)	217, 331
Bst2BI	CACGAG	1 cut(s)	156
Bst4CI	ACNGT	1 cut(s)	500
BstC8I	GCNNGC	3 cut(s)	286, 382, 550
BstDEI	CTNAG	2 cut(s)	509, 714
BstDSI	CCRYGG	1 cut(s)	217
BstKTI	GATC	3 cut(s)	40, 410, 652
BstMAI	GTCTC	3 cut(s)	227, 352, 425
BstMBI	GATC	3 cut(s)	37, 407, 649
BstMWI	GCNNNNNNNGC	3 cut(s)	213, 281, 715
BstV1I	GCAGC	3 cut(s)	188, 275, 688
BstXI	CCANNNNNNTGG	1 cut(s)	523
Bsu15I	ATCGAT	1 cut(s)	406
BsuRI	GGCC	2 cut(s)	216, 284
BsuTUI	ATCGAT	1 cut(s)	406
BtgI	CCRYGG	1 cut(s)	217
BtgZI	GCGATG	1 cut(s)	97
BtsIMutI	CAGTG	2 cut(s)	394, 430
BveI	ACCTGC	1 cut(s)	256
Cac8I	GCNNGC	3 cut(s)	286, 382, 550
CciI	TCATGA	2 cut(s)	64, 144
Cfr10I	RCCGGY	1 cut(s)	284
Cfr13I	GGNCC	1 cut(s)	282
ClaI	ATCGAT	1 cut(s)	406
CseI	GACGC	1 cut(s)	698
Csp6I	GTAC	3 cut(s)	88, 481, 696
CviAII	CATG	5 cut(s)	29, 65, 145, 218, 523
CviQI	GTAC	3 cut(s)	88, 481, 696
DdeI	CTNAG	2 cut(s)	509, 714
DpnI	GATC	3 cut(s)	39, 409, 651
DpnII	GATC	3 cut(s)	37, 407, 649
Eco130I	CCWWGG	2 cut(s)	217, 331
Eco31I	GGTCTC	1 cut(s)	227
EcoT14I	CCWWGG	2 cut(s)	217, 331
ErhI	CCWWGG	2 cut(s)	217, 331
FaeI	CATG	5 cut(s)	32, 68, 148, 221, 526
FaqI	GGGAC	1 cut(s)	611
FatI	CATG	5 cut(s)	28, 64, 144, 217, 522
Fnu4HI	GCNGC	5 cut(s)	177, 289, 677, 680, 719
Fsp4HI	GCNGC	5 cut(s)	177, 289, 677, 680, 719
FspBI	CTAG	1 cut(s)	212
GluI	GCNGC	5 cut(s)	177, 289, 677, 680, 719
GsuI	CTGGAG	1 cut(s)	370
HaeIII	GGCC	2 cut(s)	216, 284
HapII	CCGG	3 cut(s)	285, 315, 536
HgaI	GACGC	1 cut(s)	698
Hin1II	CATG	5 cut(s)	32, 68, 148, 221, 526
HincII	GTYRAC	1 cut(s)	152
HindII	GTYRAC	1 cut(s)	152
HinfI	GANTC	4 cut(s)	148, 296, 395, 607
HpaII	CCGG	3 cut(s)	285, 315, 536
HphI	GGTGA	2 cut(s)	13, 47
Hpy166II	GTNNAC	2 cut(s)	152, 696
Hpy188I	TCNGA	2 cut(s)	271, 400
Hpy188III	TCNNGA	4 cut(s)	44, 65, 145, 587
Hpy8I	GTNNAC	2 cut(s)	152, 696
HpyAV	CCTTC	2 cut(s)	639, 724
HpyCH4III	ACNGT	1 cut(s)	500
HpyCH4IV	ACGT	1 cut(s)	184
HpyCH4V	TGCA	2 cut(s)	85, 176
HpyF10VI	GCNNNNNNNGC	3 cut(s)	213, 281, 715
HpyF3I	CTNAG	2 cut(s)	509, 714
HpySE526I	ACGT	1 cut(s)	184
Hsp92II	CATG	5 cut(s)	32, 68, 148, 221, 526
KroI	GCCGGC	1 cut(s)	284
KroNI	GCCGGC	1 cut(s)	286
Kzo9I	GATC	3 cut(s)	37, 407, 649
LmnI	GCTCC	3 cut(s)	83, 166, 389
Lsp1109I	GCAGC	3 cut(s)	188, 275, 688
LweI	GCATC	1 cut(s)	262
MaeI	CTAG	1 cut(s)	212
MaeII	ACGT	1 cut(s)	184
MaeIII	GTNAC	3 cut(s)	135, 494, 799
MalI	GATC	3 cut(s)	39, 409, 651
MboI	GATC	3 cut(s)	37, 407, 649
MboII	GAAGA	2 cut(s)	32, 644
MhlI	GDGCHC	1 cut(s)	163
MluCI	AATT	2 cut(s)	127, 140
MlyI	GAGTC	2 cut(s)	157, 616
MmeI	TCCRAC	1 cut(s)	77
MnlI	CCTC	6 cut(s)	29, 165, 246, 781, 785, 814
MroNI	GCCGGC	1 cut(s)	284
MslI	CAYNNNNRTG	3 cut(s)	33, 423, 521
MspA1I	CMGCKG	2 cut(s)	647, 679
MspI	CCGG	3 cut(s)	285, 315, 536
MwoI	GCNNNNNNNGC	3 cut(s)	213, 281, 715
NaeI	GCCGGC	1 cut(s)	286
NcoI	CCATGG	1 cut(s)	217
NdeII	GATC	3 cut(s)	37, 407, 649
NgoMIV	GCCGGC	1 cut(s)	284
NlaIII	CATG	5 cut(s)	32, 68, 148, 221, 526
NlaIV	GGNNCC	1 cut(s)	79
NmeAIII	GCCGAG	1 cut(s)	454
NmuCI	GTSAC	1 cut(s)	135
PagI	TCATGA	2 cut(s)	64, 144
PdiI	GCCGGC	1 cut(s)	286
PfeI	GAWTC	2 cut(s)	296, 395
PkrI	GCNGC	5 cut(s)	178, 290, 678, 681, 720
PleI	GAGTC	2 cut(s)	156, 615
PpsI	GAGTC	2 cut(s)	156, 615
PspN4I	GGNNCC	1 cut(s)	79
PspPI	GGNCC	1 cut(s)	282
PvuII	CAGCTG	1 cut(s)	647
RsaI	GTAC	3 cut(s)	89, 482, 697
RsaNI	GTAC	3 cut(s)	88, 481, 696
RseI	CAYNNNNRTG	3 cut(s)	33, 423, 521
SatI	GCNGC	5 cut(s)	177, 289, 677, 680, 719
Sau3AI	GATC	3 cut(s)	37, 407, 649
Sau96I	GGNCC	1 cut(s)	282
SchI	GAGTC	2 cut(s)	157, 616
SduI	GDGCHC	1 cut(s)	163
SfaNI	GCATC	1 cut(s)	262
SmiMI	CAYNNNNRTG	3 cut(s)	33, 423, 521
Sse9I	AATT	2 cut(s)	127, 140
SsiI	CCGC	4 cut(s)	122, 193, 679, 719
SspMI	CTAG	1 cut(s)	212
StyI	CCWWGG	2 cut(s)	217, 331
TaaI	ACNGT	1 cut(s)	500
TaiI	ACGT	1 cut(s)	187
TaqI	TCGA	2 cut(s)	406, 564
TasI	AATT	2 cut(s)	127, 140
TauI	GCSGC	2 cut(s)	682, 721
TfiI	GAWTC	2 cut(s)	296, 395
TscAI	CASTG	2 cut(s)	394, 430
TseFI	GTSAC	1 cut(s)	135
TseI	GCWGC	3 cut(s)	176, 288, 676
Tsp45I	GTSAC	1 cut(s)	135
TspDTI	ATGAA	4 cut(s)	53, 133, 474, 608
TspGWI	ACGGA	1 cut(s)	622
TspRI	CASTG	2 cut(s)	394, 430
XspI	CTAG	1 cut(s)	212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.