RchiOBHm_Chr5g0026511

Mitochondrial protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0003077
Physical Location & Seq
Forward (+)
20615483 .. 20618118
2636 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ30609

Sequence Viewer

Length: 834 bp
ATGAGCTCTTTTCTGCTTTCTGTTGGCTTTCGACATAGTAAAGCTGACTCATCTTTATTCATCTATCAACATGGACTGCATACAATTTTCTTTTTACTCTATGTTGATGACATTGTCATTACGGGCAGCAGTGATCAGCTTCTTCAAAGTTTTATTGATGCCTTGGGCCGTGGATTTGACATTAAGGATCTTGGTCCCCTTCACTATTTCCTTGGTTTACAGGTCAAGCCTCATTCCAACGGCCTTCACATCAATCAACTCAAGTATGCTCATGATATTTTAAAGAAGCATGATCTATTACTCAGTCAACCAGTGAGCACCCCAATGTCGGCAAAGGCTGTCCTCACCACACATGATGGTGATCTTCTTGAAAATCCAACTGCCTTTCGTGAGATGGTTGGCTCCTTGCAGTACCTAACCATTACATGCCCTGACAACGCCTTTGCGGTCAATTCTGTGTCACAATTCATGAGTCAACCTCGTGCTCCACATCTCATTACTGCCAAACGTATTCTCCGCTATGTCAAAGGCACACTAGGCCATGGTCTCCATTTTAGTCCTCAATGCCAACCTGCCCACCTTTCTGCTTACTCTGATGCCGATTGGGCGGGCTGCCCAGAATCTCGCCGTTCCACTTCCGGCTATCTCATTTACCTTGGCAATACCCTTGTCTCTTGGTGTTCCAAAAAGCAACCTACCATTGCTCGCTCCAGTGCCGAATCTGAATATCGATCCCTTGCTCATTCCAGTGCCGAGACAACTTGGTTAGGCTTCTTACTATATGAACTTGGTGTCCATATTCAGTACCCCATTCGGCTTTCTGTGATAACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_2 gag_pre-integrs

Protein Analysis

277

Amino Acids

30.81

Weight (kDa)

7.79

Isoelectric Point (pI)

43.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_2 PF07727 2 - 110 1.8e-18 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 580
AciI CCGC 3 cut(s) 446, 517, 608
AclWI GGATC 2 cut(s) 195, 726
AfaI GTAC 2 cut(s) 413, 806
AfiI CCNNNNNNNGG 1 cut(s) 328
AgsI TTSAA 2 cut(s) 146, 371
AloI GAACNNNNNNTCC 2 cut(s) 777, 809
AluBI AGCT 3 cut(s) 6, 44, 139
AluI AGCT 3 cut(s) 6, 44, 139
Alw21I GWGCWC 3 cut(s) 8, 320, 487
Alw26I GTCTC 3 cut(s) 551, 676, 749
AlwI GGATC 2 cut(s) 195, 726
AoxI GGCC 3 cut(s) 166, 241, 538
ApeKI GCWGC 2 cut(s) 126, 612
ArsI GACNNNNNNTTYG 2 cut(s) 425, 457
AspS9I GGNCC 2 cut(s) 166, 194
AsuHPI GGTGA 2 cut(s) 337, 371
AvaII GGWCC 1 cut(s) 194
BanII GRGCYC 1 cut(s) 8
BauI CACGAG 1 cut(s) 480
Bbv12I GWGCWC 3 cut(s) 8, 320, 487
BbvI GCAGC 2 cut(s) 138, 599
BccI CCATC 2 cut(s) 350, 388
BceAI ACGGC 3 cut(s) 153, 256, 612
BclI TGATCA 1 cut(s) 133
BcoDI GTCTC 3 cut(s) 551, 676, 749
BfaI CTAG 1 cut(s) 536
BfuAI ACCTGC 1 cut(s) 580
BglI GCCNNNNNGGC 1 cut(s) 605
BisI GCNGC 2 cut(s) 127, 613
BlsI GCNGC 2 cut(s) 128, 614
Bme18I GGWCC 1 cut(s) 194
BmgT120I GGNCC 2 cut(s) 166, 194
BmiI GGNNCC 2 cut(s) 196, 403
BmsI GCATC 2 cut(s) 148, 586
BplI GAGNNNNNCTC 2 cut(s) 463, 495
BpmI CTGGAG 1 cut(s) 694
BpuEI CTTGAG 1 cut(s) 245
Bsa29I ATCGAT 1 cut(s) 730
BsaBI GATNNNNATC 1 cut(s) 360
BsaI GGTCTC 1 cut(s) 551
BsaJI CCNNGG 5 cut(s) 162, 169, 211, 541, 655
BsaXI ACNNNNNCTCC 2 cut(s) 498, 528
Bsc4I CCNNNNNNNGG 1 cut(s) 328
Bse1I ACTGG 3 cut(s) 311, 711, 747
Bse3DI GCAATG 1 cut(s) 699
Bse8I GATNNNNATC 1 cut(s) 360
BseCI ATCGAT 1 cut(s) 730
BseDI CCNNGG 5 cut(s) 162, 169, 211, 541, 655
BseJI GATNNNNATC 1 cut(s) 360
BseLI CCNNNNNNNGG 1 cut(s) 328
BseMI GCAATG 1 cut(s) 699
BseMII CTCAG 1 cut(s) 316
BseNI ACTGG 3 cut(s) 311, 711, 747
BseXI GCAGC 2 cut(s) 138, 599
BshFI GGCC 3 cut(s) 168, 243, 540
BshVI ATCGAT 1 cut(s) 730
BsiHKAI GWGCWC 3 cut(s) 8, 320, 487
BsiSI CCGG 1 cut(s) 639
BslFI GGGAC 1 cut(s) 180
BslI CCNNNNNNNGG 1 cut(s) 328
BsmAI GTCTC 3 cut(s) 551, 676, 749
BsmFI GGGAC 1 cut(s) 180
BsnI GGCC 3 cut(s) 168, 243, 540
Bso31I GGTCTC 1 cut(s) 551
Bsp1286I GDGCHC 3 cut(s) 8, 320, 487
Bsp143I GATC 5 cut(s) 133, 187, 292, 361, 731
Bsp19I CCATGG 1 cut(s) 541
BspACI CCGC 3 cut(s) 446, 517, 608
BspANI GGCC 3 cut(s) 168, 243, 540
BspCNI CTCAG 1 cut(s) 315
BspDI ATCGAT 1 cut(s) 730
BspHI TCATGA 2 cut(s) 271, 468
BspLI GGNNCC 2 cut(s) 196, 403
BspMI ACCTGC 1 cut(s) 580
BspPI GGATC 2 cut(s) 195, 726
BspTNI GGTCTC 1 cut(s) 551
BsrDI GCAATG 1 cut(s) 699
BsrI ACTGG 3 cut(s) 311, 711, 747
BssECI CCNNGG 5 cut(s) 162, 169, 211, 541, 655
BssMI GATC 5 cut(s) 133, 187, 292, 361, 731
BssSI CACGAG 1 cut(s) 480
BssT1I CCWWGG 4 cut(s) 162, 211, 541, 655
Bst2BI CACGAG 1 cut(s) 480
BstC8I GCNNGC 2 cut(s) 610, 706
BstDEI CTNAG 1 cut(s) 302
BstDSI CCRYGG 2 cut(s) 169, 541
BstKTI GATC 5 cut(s) 136, 190, 295, 364, 734
BstMAI GTCTC 3 cut(s) 551, 676, 749
BstMBI GATC 5 cut(s) 133, 187, 292, 361, 731
BstMWI GCNNNNNNNGC 2 cut(s) 537, 605
BstNSI RCATGY 1 cut(s) 429
BstV1I GCAGC 2 cut(s) 138, 599
BstX2I RGATCY 1 cut(s) 187
BstYI RGATCY 1 cut(s) 187
Bsu15I ATCGAT 1 cut(s) 730
BsuRI GGCC 3 cut(s) 168, 243, 540
BsuTUI ATCGAT 1 cut(s) 730
BtgI CCRYGG 2 cut(s) 169, 541
BtsI GCAGTG 1 cut(s) 136
BtsIMutI CAGTG 4 cut(s) 136, 318, 718, 754
BveI ACCTGC 1 cut(s) 580
Cac8I GCNNGC 2 cut(s) 610, 706
CciI TCATGA 2 cut(s) 271, 468
Cfr13I GGNCC 2 cut(s) 166, 194
ClaI ATCGAT 1 cut(s) 730
Csp6I GTAC 2 cut(s) 412, 805
CviAII CATG 7 cut(s) 71, 272, 290, 353, 426, 469, 542
CviQI GTAC 2 cut(s) 412, 805
DdeI CTNAG 1 cut(s) 302
DpnI GATC 5 cut(s) 135, 189, 294, 363, 733
DpnII GATC 5 cut(s) 133, 187, 292, 361, 731
DraI TTTAAA 1 cut(s) 282
Ecl136II GAGCTC 1 cut(s) 6
Eco130I CCWWGG 4 cut(s) 162, 211, 541, 655
Eco24I GRGCYC 1 cut(s) 8
Eco31I GGTCTC 1 cut(s) 551
Eco47I GGWCC 1 cut(s) 194
Eco53kI GAGCTC 1 cut(s) 6
EcoICRI GAGCTC 1 cut(s) 6
EcoT14I CCWWGG 4 cut(s) 162, 211, 541, 655
EcoT38I GRGCYC 1 cut(s) 8
ErhI CCWWGG 4 cut(s) 162, 211, 541, 655
FaeI CATG 7 cut(s) 74, 275, 293, 356, 429, 472, 545
FaqI GGGAC 1 cut(s) 180
FatI CATG 7 cut(s) 70, 271, 289, 352, 425, 468, 541
FauI CCCGC 1 cut(s) 601
FbaI TGATCA 1 cut(s) 133
Fnu4HI GCNGC 2 cut(s) 127, 613
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 2 cut(s) 127, 613
FspBI CTAG 1 cut(s) 536
GluI GCNGC 2 cut(s) 127, 613
GsuI CTGGAG 1 cut(s) 694
HaeIII GGCC 3 cut(s) 168, 243, 540
HapII CCGG 1 cut(s) 639
Hin1II CATG 7 cut(s) 74, 275, 293, 356, 429, 472, 545
HincII GTYRAC 2 cut(s) 308, 476
HindII GTYRAC 2 cut(s) 308, 476
HinfI GANTC 4 cut(s) 47, 472, 620, 719
HpaII CCGG 1 cut(s) 639
HphI GGTGA 2 cut(s) 337, 371
Hpy166II GTNNAC 3 cut(s) 218, 308, 476
Hpy188I TCNGA 2 cut(s) 595, 724
Hpy188III TCNNGA 4 cut(s) 272, 368, 389, 469
Hpy8I GTNNAC 3 cut(s) 218, 308, 476
HpyAV CCTTC 2 cut(s) 209, 254
HpyCH4IV ACGT 1 cut(s) 508
HpyCH4V TGCA 2 cut(s) 79, 409
HpyF10VI GCNNNNNNNGC 2 cut(s) 537, 605
HpyF3I CTNAG 1 cut(s) 302
HpySE526I ACGT 1 cut(s) 508
Hsp92II CATG 7 cut(s) 74, 275, 293, 356, 429, 472, 545
Ksp22I TGATCA 1 cut(s) 133
Kzo9I GATC 5 cut(s) 133, 187, 292, 361, 731
LmnI GCTCC 3 cut(s) 407, 490, 713
LpnPI CCDG 8 cut(s) 206, 324, 444, 585, 630, 652, 724, 760
Lsp1109I GCAGC 2 cut(s) 138, 599
LweI GCATC 2 cut(s) 148, 586
MaeI CTAG 1 cut(s) 536
MaeII ACGT 1 cut(s) 508
MaeIII GTNAC 1 cut(s) 459
MalI GATC 5 cut(s) 135, 189, 294, 363, 733
MboI GATC 5 cut(s) 133, 187, 292, 361, 731
MboII GAAGA 2 cut(s) 134, 356
MflI RGATCY 1 cut(s) 187
MhlI GDGCHC 3 cut(s) 8, 320, 487
MluCI AATT 3 cut(s) 84, 451, 464
MlyI GAGTC 2 cut(s) 41, 481
MmeI TCCRAC 2 cut(s) 261, 401
MnlI CCTC 4 cut(s) 240, 353, 489, 570
MseI TTAA 2 cut(s) 183, 281
MslI CAYNNNNRTG 3 cut(s) 323, 357, 747
MspI CCGG 1 cut(s) 639
MwoI GCNNNNNNNGC 2 cut(s) 537, 605
NcoI CCATGG 1 cut(s) 541
NdeII GATC 5 cut(s) 133, 187, 292, 361, 731
NlaIII CATG 7 cut(s) 74, 275, 293, 356, 429, 472, 545
NlaIV GGNNCC 2 cut(s) 196, 403
NmeAIII GCCGAG 1 cut(s) 778
NmuCI GTSAC 1 cut(s) 459
NspI RCATGY 1 cut(s) 429
PagI TCATGA 2 cut(s) 271, 468
PfeI GAWTC 2 cut(s) 620, 719
PflFI GACNNNGTC 1 cut(s) 113
PkrI GCNGC 2 cut(s) 128, 614
PleI GAGTC 2 cut(s) 41, 480
PpsI GAGTC 2 cut(s) 41, 480
Psp124BI GAGCTC 1 cut(s) 8
PspN4I GGNNCC 2 cut(s) 196, 403
PspPI GGNCC 2 cut(s) 166, 194
PsuI RGATCY 1 cut(s) 187
PsyI GACNNNGTC 1 cut(s) 113
RsaI GTAC 2 cut(s) 413, 806
RsaNI GTAC 2 cut(s) 412, 805
RseI CAYNNNNRTG 3 cut(s) 323, 357, 747
SacI GAGCTC 1 cut(s) 8
SaqAI TTAA 2 cut(s) 183, 281
SatI GCNGC 2 cut(s) 127, 613
Sau3AI GATC 5 cut(s) 133, 187, 292, 361, 731
Sau96I GGNCC 2 cut(s) 166, 194
SchI GAGTC 2 cut(s) 41, 481
SduI GDGCHC 3 cut(s) 8, 320, 487
SfaNI GCATC 2 cut(s) 148, 586
SinI GGWCC 1 cut(s) 194
SmiMI CAYNNNNRTG 3 cut(s) 323, 357, 747
SmlI CTYRAG 1 cut(s) 260
SmoI CTYRAG 1 cut(s) 260
Sse9I AATT 3 cut(s) 84, 451, 464
SsiI CCGC 3 cut(s) 446, 517, 608
SspMI CTAG 1 cut(s) 536
SstI GAGCTC 1 cut(s) 8
StyI CCWWGG 4 cut(s) 162, 211, 541, 655
TaiI ACGT 1 cut(s) 511
TaqI TCGA 2 cut(s) 31, 730
TasI AATT 3 cut(s) 84, 451, 464
TfiI GAWTC 2 cut(s) 620, 719
Tru1I TTAA 2 cut(s) 183, 281
Tru9I TTAA 2 cut(s) 183, 281
TscAI CASTG 4 cut(s) 136, 318, 718, 754
TseFI GTSAC 1 cut(s) 459
TseI GCWGC 2 cut(s) 126, 612
Tsp45I GTSAC 1 cut(s) 459
TspDTI ATGAA 3 cut(s) 49, 457, 798
TspRI CASTG 4 cut(s) 136, 318, 718, 754
Tth111I GACNNNGTC 1 cut(s) 113
VpaK11BI GGWCC 1 cut(s) 194
XceI RCATGY 1 cut(s) 429
XspI CTAG 1 cut(s) 536
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.