RchiOBHm_Chr5g0078261

Mitochondrial protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0003077
Physical Location & Seq
Forward (+)
84191057 .. 84192202
1146 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ35279

Sequence Viewer

Length: 834 bp
ATGTTGCTTACCAAGCCCATGAGTACCCCTATGTCTGCCAAGGATTCTCTCACTGCCACTGATGGTGCGTTACTTGATAATCCCACTGAATTTCGGACACTCGTCGGTGCTTTACAATACCTCACGATTACACGTCCGGATATTGCTTTTGCGGTCAACTCGGTTTCTCAATTTATGAGTCAACCTCGTCTTCCTCATCTTGTTGCCGTGAAGCGCATTCTTCGCTATGTCAAAGGCACACTTGGTCATGGTTTATCCTTTGCTCCTCAACATCAGCCAGTGCACCTCTTCGCCTACTCTGATGCGGATTGGGCGGGCTGTCCCGACTCCCGCCGGTCCACGTCAGGTTATCTTGTGTATCTTGGTTCGAATTTGATCTCTTGGTGCTCCAAGAAGCAGCCCACGATTGCCCGCTCGAGTGCCGAGTCGGAATATCGTTCCCTTGCTCATGCCTGTGCTGAAACTACTTGGTTGGGTTATCTGCTCTATGAACTTGGCGCTCGCATTCAGTTTCCCATCTTATTGCATTGTGATAATCTTAGTGCTACCTACATGGCGTCCAATCCTGTATTCCATGCTCGAACTAAGCATATCGAGCTTGATTATCATTATGTCCGCGAAAAAGTTGCTCTTGGTAGTCATCGGGTCTGCTTCATTCCCTCTGTTGATCAGCCAGCTGATCTACTCACTAAACCGCTTCACAAGTCACGTCATTTTCTCCTTTCAAGCAAACTTGTTCGTCCGGAGCCGCCAAGTTTGAGGGGGGGTGTTAGAGAGACTAAATCTTCTCCTGAAATCAAGTCATCTAATTCTTCTCCATTGATTTGTTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_2 gag_pre-integrs

Protein Analysis

277

Amino Acids

30.74

Weight (kDa)

9.3

Isoelectric Point (pI)

55.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 414
AccII CGCG 1 cut(s) 618
AccIII TCCGGA 2 cut(s) 136, 742
AciI CCGC 8 cut(s) 152, 305, 314, 331, 412, 616, 695, 749
AcsI RAATTY 2 cut(s) 89, 370
AcyI GRCGYC 1 cut(s) 557
AfaI GTAC 1 cut(s) 25
AflIII ACRYGT 1 cut(s) 131
AgsI TTSAA 1 cut(s) 726
AjiI CACGTC 3 cut(s) 134, 342, 710
AjuI GAANNNNNNNTTGG 2 cut(s) 554, 586
AluBI AGCT 2 cut(s) 598, 677
AluI AGCT 2 cut(s) 598, 677
Alw21I GWGCWC 2 cut(s) 285, 389
Alw26I GTCTC 1 cut(s) 770
Alw44I GTGCAC 1 cut(s) 281
Ama87I CYCGRG 1 cut(s) 415
Aor13HI TCCGGA 2 cut(s) 136, 742
ApaLI GTGCAC 1 cut(s) 281
ApeKI GCWGC 1 cut(s) 397
ApoI RAATTY 2 cut(s) 89, 370
AspLEI GCGC 2 cut(s) 216, 500
AspS9I GGNCC 1 cut(s) 336
AsuII TTCGAA 1 cut(s) 368
AvaI CYCGRG 1 cut(s) 415
AvaII GGWCC 1 cut(s) 336
BaeGI GKGCMC 1 cut(s) 285
BbsI GAAGAC 1 cut(s) 182
Bbv12I GWGCWC 2 cut(s) 285, 389
BbvI GCAGC 1 cut(s) 409
BccI CCATC 2 cut(s) 56, 524
BceAI ACGGC 1 cut(s) 191
BcgI CGANNNNNNTGC 2 cut(s) 608, 642
BclI TGATCA 1 cut(s) 667
BcoDI GTCTC 1 cut(s) 770
BfoI RGCGCY 1 cut(s) 501
BisI GCNGC 2 cut(s) 398, 749
BlsI GCNGC 2 cut(s) 399, 750
Bme18I GGWCC 1 cut(s) 336
BmeT110I CYCGRG 1 cut(s) 415
BmgBI CACGTC 3 cut(s) 134, 342, 710
BmgT120I GGNCC 1 cut(s) 336
BmiI GGNNCC 1 cut(s) 747
BmsI GCATC 1 cut(s) 292
BoxI GACNNNNGTC 1 cut(s) 101
BpiI GAAGAC 1 cut(s) 182
BplI GAGNNNNNCTC 2 cut(s) 169, 201
Bpu14I TTCGAA 1 cut(s) 368
BsaHI GRCGYC 1 cut(s) 557
BsaJI CCNNGG 1 cut(s) 39
BsaWI WCCGGW 2 cut(s) 136, 742
Bse118I RCCGGY 1 cut(s) 333
Bse1I ACTGG 1 cut(s) 278
BseAI TCCGGA 2 cut(s) 136, 742
BseDI CCNNGG 1 cut(s) 39
BseNI ACTGG 1 cut(s) 278
BseRI GAGGAG 1 cut(s) 255
BseSI GKGCMC 1 cut(s) 285
BseXI GCAGC 1 cut(s) 409
Bsh1236I CGCG 1 cut(s) 618
BsiHKAI GWGCWC 2 cut(s) 285, 389
BsiHKCI CYCGRG 1 cut(s) 415
BsiSI CCGG 3 cut(s) 137, 334, 743
BslFI GGGAC 1 cut(s) 306
BsmAI GTCTC 1 cut(s) 770
BsmFI GGGAC 1 cut(s) 306
BsmI GAATGC 2 cut(s) 216, 504
BsoBI CYCGRG 1 cut(s) 415
Bsp119I TTCGAA 1 cut(s) 368
Bsp1286I GDGCHC 2 cut(s) 285, 389
Bsp13I TCCGGA 2 cut(s) 136, 742
Bsp143I GATC 3 cut(s) 375, 667, 679
BspACI CCGC 8 cut(s) 152, 305, 314, 331, 412, 616, 695, 749
BspEI TCCGGA 2 cut(s) 136, 742
BspFNI CGCG 1 cut(s) 618
BspLI GGNNCC 1 cut(s) 747
BspT104I TTCGAA 1 cut(s) 368
BsrBI CCGCTC 1 cut(s) 414
BsrFI RCCGGY 1 cut(s) 333
BsrI ACTGG 1 cut(s) 278
BssAI RCCGGY 1 cut(s) 333
BssECI CCNNGG 1 cut(s) 39
BssMI GATC 3 cut(s) 375, 667, 679
BssNI GRCGYC 1 cut(s) 557
BssT1I CCWWGG 1 cut(s) 39
Bst6I CTCTTC 1 cut(s) 293
BstACI GRCGYC 1 cut(s) 557
BstBI TTCGAA 1 cut(s) 368
BstC8I GCNNGC 4 cut(s) 316, 412, 502, 675
BstDEI CTNAG 2 cut(s) 539, 585
BstFNI CGCG 1 cut(s) 618
BstH2I RGCGCY 1 cut(s) 501
BstHHI GCGC 2 cut(s) 216, 500
BstKTI GATC 3 cut(s) 378, 670, 682
BstMAI GTCTC 1 cut(s) 770
BstMBI GATC 3 cut(s) 375, 667, 679
BstMWI GCNNNNNNNGC 4 cut(s) 13, 222, 311, 595
BstPAI GACNNNNGTC 1 cut(s) 101
BstSLI GKGCMC 1 cut(s) 285
BstUI CGCG 1 cut(s) 618
BstV1I GCAGC 1 cut(s) 409
BstV2I GAAGAC 1 cut(s) 182
BtrI CACGTC 3 cut(s) 134, 342, 710
BtsI GCAGTG 1 cut(s) 51
BtsIMutI CAGTG 4 cut(s) 51, 57, 84, 285
Cac8I GCNNGC 4 cut(s) 316, 412, 502, 675
CfoI GCGC 2 cut(s) 216, 500
Cfr10I RCCGGY 1 cut(s) 333
Cfr13I GGNCC 1 cut(s) 336
CseI GACGC 1 cut(s) 546
Csp6I GTAC 1 cut(s) 24
CviAII CATG 5 cut(s) 19, 248, 449, 553, 575
CviJI RGCY 8 cut(s) 16, 277, 318, 400, 598, 673, 677, 748
CviKI_1 RGCY 8 cut(s) 16, 277, 318, 400, 598, 673, 677, 748
CviQI GTAC 1 cut(s) 24
DdeI CTNAG 2 cut(s) 539, 585
DpnI GATC 3 cut(s) 377, 669, 681
DpnII GATC 3 cut(s) 375, 667, 679
Eam1104I CTCTTC 1 cut(s) 293
EarI CTCTTC 1 cut(s) 293
Eco130I CCWWGG 1 cut(s) 39
Eco47I GGWCC 1 cut(s) 336
Eco88I CYCGRG 1 cut(s) 415
EcoT14I CCWWGG 1 cut(s) 39
ErhI CCWWGG 1 cut(s) 39
FaeI CATG 5 cut(s) 22, 251, 452, 556, 578
FalI AAGNNNNNCTT 4 cut(s) 225, 257, 615, 647
FaqI GGGAC 1 cut(s) 306
FatI CATG 5 cut(s) 18, 247, 448, 552, 574
FauI CCCGC 3 cut(s) 307, 338, 419
FbaI TGATCA 1 cut(s) 667
Fnu4HI GCNGC 2 cut(s) 398, 749
Fsp4HI GCNGC 2 cut(s) 398, 749
GlaI GCGC 2 cut(s) 215, 499
GluI GCNGC 2 cut(s) 398, 749
HaeII RGCGCY 1 cut(s) 501
HapII CCGG 3 cut(s) 137, 334, 743
HgaI GACGC 1 cut(s) 546
HhaI GCGC 2 cut(s) 216, 500
Hin1I GRCGYC 1 cut(s) 557
Hin1II CATG 5 cut(s) 22, 251, 452, 556, 578
Hin6I GCGC 2 cut(s) 214, 498
HinP1I GCGC 2 cut(s) 214, 498
HincII GTYRAC 2 cut(s) 157, 182
HindII GTYRAC 2 cut(s) 157, 182
HinfI GANTC 4 cut(s) 44, 178, 326, 425
HpaII CCGG 3 cut(s) 137, 334, 743
Hpy166II GTNNAC 4 cut(s) 157, 182, 283, 339
Hpy188I TCNGA 3 cut(s) 96, 301, 430
Hpy188III TCNNGA 5 cut(s) 124, 137, 323, 743, 791
Hpy8I GTNNAC 4 cut(s) 157, 182, 283, 339
Hpy99I CGWCG 1 cut(s) 107
HpyCH4IV ACGT 3 cut(s) 133, 341, 709
HpyCH4V TGCA 2 cut(s) 283, 526
HpyF10VI GCNNNNNNNGC 4 cut(s) 13, 222, 311, 595
HpyF3I CTNAG 2 cut(s) 539, 585
HpySE526I ACGT 3 cut(s) 133, 341, 709
Hsp92I GRCGYC 1 cut(s) 557
Hsp92II CATG 5 cut(s) 22, 251, 452, 556, 578
HspAI GCGC 2 cut(s) 214, 498
Kpn2I TCCGGA 2 cut(s) 136, 742
Ksp22I TGATCA 1 cut(s) 667
Kzo9I GATC 3 cut(s) 375, 667, 679
LmnI GCTCC 3 cut(s) 268, 392, 745
LpnPI CCDG 9 cut(s) 150, 291, 330, 347, 466, 579, 687, 756, 804
Lsp1109I GCAGC 1 cut(s) 409
LweI GCATC 1 cut(s) 292
MaeII ACGT 3 cut(s) 133, 341, 709
MaeIII GTNAC 2 cut(s) 69, 705
MalI GATC 3 cut(s) 377, 669, 681
MbiI CCGCTC 1 cut(s) 414
MboI GATC 3 cut(s) 375, 667, 679
MboII GAAGA 5 cut(s) 182, 212, 280, 777, 804
MhlI GDGCHC 2 cut(s) 285, 389
MluCI AATT 4 cut(s) 89, 170, 370, 808
MlyI GAGTC 3 cut(s) 187, 320, 434
MmeI TCCRAC 1 cut(s) 408
MnlI CCTC 7 cut(s) 131, 195, 204, 276, 296, 670, 753
MroI TCCGGA 2 cut(s) 136, 742
MslI CAYNNNNRTG 1 cut(s) 453
MspA1I CMGCKG 1 cut(s) 677
MspI CCGG 3 cut(s) 137, 334, 743
Mva1269I GAATGC 2 cut(s) 216, 504
MvnI CGCG 1 cut(s) 618
MwoI GCNNNNNNNGC 4 cut(s) 13, 222, 311, 595
NdeII GATC 3 cut(s) 375, 667, 679
NlaIII CATG 5 cut(s) 22, 251, 452, 556, 578
NlaIV GGNNCC 1 cut(s) 747
NmeAIII GCCGAG 1 cut(s) 448
NmuCI GTSAC 1 cut(s) 705
NspV TTCGAA 1 cut(s) 368
PaeR7I CTCGAG 1 cut(s) 415
PctI GAATGC 2 cut(s) 216, 504
PfeI GAWTC 1 cut(s) 44
PkrI GCNGC 2 cut(s) 399, 750
PleI GAGTC 3 cut(s) 186, 320, 433
PpsI GAGTC 3 cut(s) 186, 320, 433
PshAI GACNNNNGTC 1 cut(s) 101
PspN4I GGNNCC 1 cut(s) 747
PspPI GGNCC 1 cut(s) 336
PspXI VCTCGAGB 1 cut(s) 415
PvuII CAGCTG 1 cut(s) 677
RsaI GTAC 1 cut(s) 25
RsaNI GTAC 1 cut(s) 24
RseI CAYNNNNRTG 1 cut(s) 453
SatI GCNGC 2 cut(s) 398, 749
Sau3AI GATC 3 cut(s) 375, 667, 679
Sau96I GGNCC 1 cut(s) 336
SchI GAGTC 3 cut(s) 187, 320, 434
SduI GDGCHC 2 cut(s) 285, 389
SfaNI GCATC 1 cut(s) 292
Sfr274I CTCGAG 1 cut(s) 415
SfuI TTCGAA 1 cut(s) 368
SinI GGWCC 1 cut(s) 336
SlaI CTCGAG 1 cut(s) 415
SmiMI CAYNNNNRTG 1 cut(s) 453
SmlI CTYRAG 1 cut(s) 415
SmoI CTYRAG 1 cut(s) 415
Sse9I AATT 4 cut(s) 89, 170, 370, 808
SsiI CCGC 8 cut(s) 152, 305, 314, 331, 412, 616, 695, 749
StyI CCWWGG 1 cut(s) 39
TaiI ACGT 3 cut(s) 136, 344, 712
TaqI TCGA 4 cut(s) 368, 416, 580, 594
TasI AATT 4 cut(s) 89, 170, 370, 808
TauI GCSGC 1 cut(s) 751
TfiI GAWTC 1 cut(s) 44
TscAI CASTG 4 cut(s) 58, 64, 91, 285
TseFI GTSAC 1 cut(s) 705
TseI GCWGC 1 cut(s) 397
Tsp45I GTSAC 1 cut(s) 705
TspDTI ATGAA 3 cut(s) 504, 643, 819
TspRI CASTG 4 cut(s) 58, 64, 91, 285
VneI GTGCAC 1 cut(s) 281
VpaK11BI GGWCC 1 cut(s) 336
XapI RAATTY 2 cut(s) 89, 370
XhoI CTCGAG 1 cut(s) 415
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.