RchiOBHm_Chr2g0122981

Mitochondrial protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0003077
Physical Location & Seq
Reverse (-)
36093000 .. 36095717
2718 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ49532

Sequence Viewer

Length: 510 bp
ATGTCGGCAAAGGCTGTTCTCACCACACATGATGGGGACCTTCTTGAAAATCCAACTGTCTTTTGTGAGATGGTTGGCTCCTTGCAATACCTAACCATTACACGCCCTGACATTGCCTTTGCGATCAATTCTGTGTCACAATTCATGAGTCAACCTCGTGCTCTGCATCTCATTGCAGCCAAACGTATTCTCCGCTATGTCAAAGACACACTAGGCCATGGTCTCTATTTTAGTCCTCAACGCCAACCTACCCACCTTTCTGCTTACTTTGATGCCGATTGGGCCGGTTGCCCAGAATCTCGCCGTTCCACTTCCGGCTATCTCATTTACCTTGGCAATACCCTTGTCTCTTGGTGTTCCAAAAAGCAATTTACCATTGCTCGCTTCAGTGCAGAATCTGAATATCGATCTCTTGCTCATTCCAATGCCGAGACAACTTGGTTAGGCTTCTTACTATATGAACTTGGTGTCCATATTCAGTACCCATTCTGCTTTACTGTGATAATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_2 gag_pre-integrs

Protein Analysis

169

Amino Acids

19.11

Weight (kDa)

7.72

Isoelectric Point (pI)

43.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 193
AcuI CTGAAG 1 cut(s) 370
AfaI GTAC 1 cut(s) 482
AgsI TTSAA 1 cut(s) 47
AloI GAACNNNNNNTCC 2 cut(s) 453, 485
Alw21I GWGCWC 1 cut(s) 163
Alw26I GTCTC 3 cut(s) 227, 352, 425
AlwNI CAGNNNCTG 1 cut(s) 398
AoxI GGCC 2 cut(s) 214, 282
ApeKI GCWGC 1 cut(s) 176
ArsI GACNNNNNNTTYG 2 cut(s) 101, 133
AspS9I GGNCC 2 cut(s) 37, 282
AsuHPI GGTGA 1 cut(s) 13
AvaII GGWCC 1 cut(s) 37
BauI CACGAG 1 cut(s) 156
Bbv12I GWGCWC 1 cut(s) 163
BbvI GCAGC 1 cut(s) 188
BccI CCATC 2 cut(s) 26, 64
BceAI ACGGC 1 cut(s) 288
BcoDI GTCTC 3 cut(s) 227, 352, 425
BfaI CTAG 1 cut(s) 212
BglI GCCNNNNNGGC 1 cut(s) 281
BisI GCNGC 1 cut(s) 177
BlsI GCNGC 1 cut(s) 178
Bme18I GGWCC 1 cut(s) 37
BmgT120I GGNCC 2 cut(s) 37, 282
BmiI GGNNCC 2 cut(s) 38, 79
BmsI GCATC 2 cut(s) 175, 262
BplI GAGNNNNNCTC 2 cut(s) 139, 171
Bsa29I ATCGAT 1 cut(s) 406
BsaI GGTCTC 1 cut(s) 227
BsaJI CCNNGG 2 cut(s) 217, 331
BsaXI ACNNNNNCTCC 2 cut(s) 174, 204
Bse118I RCCGGY 1 cut(s) 284
Bse3DI GCAATG 3 cut(s) 111, 171, 375
BseCI ATCGAT 1 cut(s) 406
BseDI CCNNGG 2 cut(s) 217, 331
BseMI GCAATG 3 cut(s) 111, 171, 375
BseXI GCAGC 1 cut(s) 188
BsgI GTGCAG 1 cut(s) 411
BshFI GGCC 2 cut(s) 216, 284
BshVI ATCGAT 1 cut(s) 406
BsiHKAI GWGCWC 1 cut(s) 163
BsiSI CCGG 2 cut(s) 285, 315
BslFI GGGAC 1 cut(s) 50
BsmAI GTCTC 3 cut(s) 227, 352, 425
BsmFI GGGAC 1 cut(s) 50
BsnI GGCC 2 cut(s) 216, 284
Bso31I GGTCTC 1 cut(s) 227
Bsp1286I GDGCHC 1 cut(s) 163
Bsp143I GATC 2 cut(s) 123, 407
Bsp19I CCATGG 1 cut(s) 217
BspACI CCGC 1 cut(s) 193
BspANI GGCC 2 cut(s) 216, 284
BspDI ATCGAT 1 cut(s) 406
BspHI TCATGA 1 cut(s) 144
BspLI GGNNCC 2 cut(s) 38, 79
BspTNI GGTCTC 1 cut(s) 227
BsrDI GCAATG 3 cut(s) 111, 171, 375
BsrFI RCCGGY 1 cut(s) 284
BssAI RCCGGY 1 cut(s) 284
BssECI CCNNGG 2 cut(s) 217, 331
BssMI GATC 2 cut(s) 123, 407
BssSI CACGAG 1 cut(s) 156
BssT1I CCWWGG 2 cut(s) 217, 331
Bst2BI CACGAG 1 cut(s) 156
Bst4CI ACNGT 2 cut(s) 58, 499
BstC8I GCNNGC 1 cut(s) 382
BstDSI CCRYGG 1 cut(s) 217
BstKTI GATC 2 cut(s) 126, 410
BstMAI GTCTC 3 cut(s) 227, 352, 425
BstMBI GATC 2 cut(s) 123, 407
BstMWI GCNNNNNNNGC 1 cut(s) 281
BstV1I GCAGC 1 cut(s) 188
Bsu15I ATCGAT 1 cut(s) 406
BsuRI GGCC 2 cut(s) 216, 284
BsuTUI ATCGAT 1 cut(s) 406
BtgI CCRYGG 1 cut(s) 217
BtsIMutI CAGTG 1 cut(s) 394
Cac8I GCNNGC 1 cut(s) 382
CaiI CAGNNNCTG 1 cut(s) 398
CciI TCATGA 1 cut(s) 144
Cfr10I RCCGGY 1 cut(s) 284
Cfr13I GGNCC 2 cut(s) 37, 282
ClaI ATCGAT 1 cut(s) 406
Csp6I GTAC 1 cut(s) 481
CviAII CATG 3 cut(s) 29, 145, 218
CviJI RGCY 7 cut(s) 14, 78, 179, 216, 284, 318, 447
CviKI_1 RGCY 7 cut(s) 14, 78, 179, 216, 284, 318, 447
CviQI GTAC 1 cut(s) 481
DpnI GATC 2 cut(s) 125, 409
DpnII GATC 2 cut(s) 123, 407
Eco130I CCWWGG 2 cut(s) 217, 331
Eco31I GGTCTC 1 cut(s) 227
Eco47I GGWCC 1 cut(s) 37
Eco57I CTGAAG 1 cut(s) 370
EcoO109I RGGNCCY 1 cut(s) 37
EcoT14I CCWWGG 2 cut(s) 217, 331
ErhI CCWWGG 2 cut(s) 217, 331
FaeI CATG 3 cut(s) 32, 148, 221
FaiI YATR 7 cut(s) 30, 146, 198, 219, 457, 459, 474
FaqI GGGAC 1 cut(s) 50
FatI CATG 3 cut(s) 28, 144, 217
Fnu4HI GCNGC 1 cut(s) 177
Fsp4HI GCNGC 1 cut(s) 177
FspBI CTAG 1 cut(s) 212
GluI GCNGC 1 cut(s) 177
HaeIII GGCC 2 cut(s) 216, 284
HapII CCGG 2 cut(s) 285, 315
Hin1II CATG 3 cut(s) 32, 148, 221
HincII GTYRAC 1 cut(s) 152
HindII GTYRAC 1 cut(s) 152
HinfI GANTC 3 cut(s) 148, 296, 395
HpaII CCGG 2 cut(s) 285, 315
HphI GGTGA 1 cut(s) 13
Hpy166II GTNNAC 1 cut(s) 152
Hpy188I TCNGA 1 cut(s) 400
Hpy188III TCNNGA 2 cut(s) 44, 145
Hpy8I GTNNAC 1 cut(s) 152
HpyAV CCTTC 1 cut(s) 50
HpyCH4III ACNGT 2 cut(s) 58, 499
HpyCH4IV ACGT 1 cut(s) 184
HpyCH4V TGCA 4 cut(s) 85, 166, 176, 392
HpyF10VI GCNNNNNNNGC 1 cut(s) 281
HpySE526I ACGT 1 cut(s) 184
Hsp92II CATG 3 cut(s) 32, 148, 221
Kzo9I GATC 2 cut(s) 123, 407
LmnI GCTCC 1 cut(s) 83
LpnPI CCDG 4 cut(s) 120, 298, 306, 328
Lsp1109I GCAGC 1 cut(s) 188
LweI GCATC 2 cut(s) 175, 262
MaeI CTAG 1 cut(s) 212
MaeII ACGT 1 cut(s) 184
MaeIII GTNAC 1 cut(s) 135
MalI GATC 2 cut(s) 125, 409
MboI GATC 2 cut(s) 123, 407
MhlI GDGCHC 1 cut(s) 163
MluCI AATT 3 cut(s) 127, 140, 368
MlyI GAGTC 1 cut(s) 157
MmeI TCCRAC 1 cut(s) 77
MnlI CCTC 2 cut(s) 165, 246
MslI CAYNNNNRTG 1 cut(s) 423
MspI CCGG 2 cut(s) 285, 315
MwoI GCNNNNNNNGC 1 cut(s) 281
NcoI CCATGG 1 cut(s) 217
NdeII GATC 2 cut(s) 123, 407
NlaIII CATG 3 cut(s) 32, 148, 221
NlaIV GGNNCC 2 cut(s) 38, 79
NmeAIII GCCGAG 1 cut(s) 454
NmuCI GTSAC 1 cut(s) 135
PagI TCATGA 1 cut(s) 144
PfeI GAWTC 2 cut(s) 296, 395
PkrI GCNGC 1 cut(s) 178
PleI GAGTC 1 cut(s) 156
PpsI GAGTC 1 cut(s) 156
PpuMI RGGWCCY 1 cut(s) 37
Psp5II RGGWCCY 1 cut(s) 37
PspN4I GGNNCC 2 cut(s) 38, 79
PspPI GGNCC 2 cut(s) 37, 282
PspPPI RGGWCCY 1 cut(s) 37
PstNI CAGNNNCTG 1 cut(s) 398
RsaI GTAC 1 cut(s) 482
RsaNI GTAC 1 cut(s) 481
RseI CAYNNNNRTG 1 cut(s) 423
SatI GCNGC 1 cut(s) 177
Sau3AI GATC 2 cut(s) 123, 407
Sau96I GGNCC 2 cut(s) 37, 282
SchI GAGTC 1 cut(s) 157
SduI GDGCHC 1 cut(s) 163
SetI ASST 7 cut(s) 42, 93, 157, 187, 250, 258, 333
SfaNI GCATC 2 cut(s) 175, 262
SinI GGWCC 1 cut(s) 37
SmiMI CAYNNNNRTG 1 cut(s) 423
Sse9I AATT 3 cut(s) 127, 140, 368
SsiI CCGC 1 cut(s) 193
SspMI CTAG 1 cut(s) 212
StyI CCWWGG 2 cut(s) 217, 331
TaaI ACNGT 2 cut(s) 58, 499
TaiI ACGT 1 cut(s) 187
TaqI TCGA 1 cut(s) 406
TasI AATT 3 cut(s) 127, 140, 368
TfiI GAWTC 2 cut(s) 296, 395
TscAI CASTG 1 cut(s) 394
TseFI GTSAC 1 cut(s) 135
TseI GCWGC 1 cut(s) 176
Tsp45I GTSAC 1 cut(s) 135
TspDTI ATGAA 2 cut(s) 133, 474
TspRI CASTG 1 cut(s) 394
VpaK11BI GGWCC 1 cut(s) 37
XspI CTAG 1 cut(s) 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.