Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00138

Orthogroup ID

OG0003077

Physical Location & Seq

Genomic Coordinates Reverse (-)

4754 .. 5932

Gene Structure 1179 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G003700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGACTCAACCTCCTGGTTTCATTGATCAATCTCACCCCACTCATGTCTGTAAACTCAACAAATCCCTCTATGGCCTTAAGCAGGTTCACACCTTCTCTCATGGCCTTCACCTTAATCAAGTCAAATATGCTCATGATCTCCTTTCTAAACATGATATGTTGCTTACCAAGCCCATGAGTACCCCTATGTCTGCCAAGGATTCTCTCACTGCCACTGATGGTGCGTTACTTGATAATCCCACTGAATTCCGGACACTCGTCGGTGCTTTACAATACCTCACGATTACACGTCTGGATATTGCTTTTGCGGTCAACTCAGTTTCTCAGTTTATGAGTCAACCTCGTCTTCCTCATCTTGTTGCCGTGAAGCGCATTCTTCGCTATGTCAAAGGCACACTTGGTCATGGTTTATCCTTTGCTTCTCAACATCAGCCAGTGCACCTCTTCGCCTACTCTGATGCGGATTGGGCGGGCTGTCCCGACTCCCGCCGGTCCACGTCAGGTTATCTTGTGTATCTTGGTTCGAATTTGATCTCTTGGTGCTCCAAGAAGCAGCCCACGATTGCCCACTCGAGTGCCGAGTCGGAATATCGTTCTCTTGCTCATGCCTGCGCTGAAACTACTTGGTTGGGTTATCTGCTCTATGAACTTGGCGCTCGCATTCAGTTTCCCATCTTATTGCATTGTGATAATCTTAGTGCTACCTACATGGCGTCCAATCCTGTATTCCATGCTCGAACTAAGCATATCGAGCTTGATTATCATTATGTCCGCGAAAAAGTTGCTCTTGGTAGTCATCGAGTCTGCTTCATTCCCTCTGTTGATCAGCCAGCTGATCTACTCACTAAACCACTTCACAAGTCACGTCATCTTCTCCTTTCAGGCAAACTTGTTCGTCCGGAGCCGCCAAGTTTGGGGGGGGGGGGGTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_2 Retrotran_gag_2 gag_pre-integrs

Protein Analysis

310

Amino Acids

34.42

Weight (kDa)

9.09

Isoelectric Point (pI)

44.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003077)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATMG00810
fragaria_vesca	FvH4_3g08011 FvH4_5g11221 FvH4_6g11491 FvH4_6g53931 FvH4_6g53931 FvH4_6g53931 FvH4_6g53931
rosa_chinensis	RchiOBHm_Chr1g0347991 RchiOBHm_Chr1g0348001 RchiOBHm_Chr1g0350631 RchiOBHm_Chr2g0100361 RchiOBHm_Chr2g0102931 RchiOBHm_Chr2g0122981 RchiOBHm_Chr2g0124571 RchiOBHm_Chr2g0134981 RchiOBHm_Chr4g0410941 RchiOBHm_Chr4g0410951 RchiOBHm_Chr5g0026511 RchiOBHm_Chr5g0078261 RchiOBHm_Chr5g0082731 RchiOBHm_Chr6g0261771 RchiOBHm_Chr6g0261781 RchiOBHm_Chr6g0276521 RchiOBHm_Chr6g0310171 RchiOBHm_Chr7g0180521 RchiOBHm_Chr7g0182281 RchiOBHm_Chr7g0231781 RchiOBHm_Chr7g0231971
rosa_roxburghii	Rroxscaffold_3G00242950
rosa_wichuraiana	Rw0G003700 Rw0G012710 Rw4G014500 Rw4G035380 Rw5G003190 Rw5G018810 Rw7G035270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	73
AccII	CGCG	1 cut(s)	774
AccIII	TCCGGA	2 cut(s)	249, 898
AciI	CCGC	6 cut(s)	308, 461, 470, 487, 772, 905
AcsI	RAATTY	2 cut(s)	245, 526
AcyI	GRCGYC	1 cut(s)	713
AfaI	GTAC	1 cut(s)	181
AfiI	CCNNNNNNNGG	2 cut(s)	82, 914
AflII	CTTAAG	1 cut(s)	77
AflIII	ACRYGT	1 cut(s)	287
AjiI	CACGTC	3 cut(s)	290, 498, 866
AjnI	CCWGG	1 cut(s)	13
AjuI	GAANNNNNNNTTGG	2 cut(s)	710, 742
AleI	CACNNNNGTG	1 cut(s)	573
AluBI	AGCT	2 cut(s)	754, 833
AluI	AGCT	2 cut(s)	754, 833
Alw21I	GWGCWC	2 cut(s)	441, 545
Alw44I	GTGCAC	1 cut(s)	437
Ama87I	CYCGRG	1 cut(s)	571
Aor13HI	TCCGGA	2 cut(s)	249, 898
AoxI	GGCC	2 cut(s)	73, 103
ApaLI	GTGCAC	1 cut(s)	437
ApeKI	GCWGC	1 cut(s)	553
ApoI	RAATTY	2 cut(s)	245, 526
AspLEI	GCGC	3 cut(s)	372, 614, 656
AspS9I	GGNCC	1 cut(s)	492
AsuHPI	GGTGA	2 cut(s)	26, 101
AsuII	TTCGAA	1 cut(s)	524
AvaI	CYCGRG	1 cut(s)	571
AvaII	GGWCC	1 cut(s)	492
BaeGI	GKGCMC	1 cut(s)	441
BbsI	GAAGAC	1 cut(s)	338
Bbv12I	GWGCWC	2 cut(s)	441, 545
BbvI	GCAGC	1 cut(s)	565
BccI	CCATC	2 cut(s)	212, 680
BceAI	ACGGC	1 cut(s)	347
BcgI	CGANNNNNNTGC	2 cut(s)	764, 798
BciT130I	CCWGG	1 cut(s)	15
BclI	TGATCA	2 cut(s)	25, 823
BfoI	RGCGCY	1 cut(s)	657
BfrI	CTTAAG	1 cut(s)	77
BfuAI	ACCTGC	1 cut(s)	73
BisI	GCNGC	2 cut(s)	554, 905
BlsI	GCNGC	2 cut(s)	555, 906
Bme1390I	CCNGG	1 cut(s)	15
Bme18I	GGWCC	1 cut(s)	492
BmeT110I	CYCGRG	1 cut(s)	571
BmgBI	CACGTC	3 cut(s)	290, 498, 866
BmgT120I	GGNCC	1 cut(s)	492
BmiI	GGNNCC	1 cut(s)	903
BmrFI	CCNGG	1 cut(s)	15
BmsI	GCATC	1 cut(s)	448
BoxI	GACNNNNGTC	1 cut(s)	257
BpiI	GAAGAC	1 cut(s)	338
BplI	GAGNNNNNCTC	2 cut(s)	325, 357
Bpu14I	TTCGAA	1 cut(s)	524
BsaHI	GRCGYC	1 cut(s)	713
BsaJI	CCNNGG	1 cut(s)	195
BsaWI	WCCGGW	2 cut(s)	249, 898
BsaXI	ACNNNNNCTCC	1 cut(s)	25
Bsc4I	CCNNNNNNNGG	2 cut(s)	82, 914
Bse118I	RCCGGY	1 cut(s)	489
Bse1I	ACTGG	1 cut(s)	434
BseAI	TCCGGA	2 cut(s)	249, 898
BseBI	CCWGG	1 cut(s)	15
BseDI	CCNNGG	1 cut(s)	195
BseLI	CCNNNNNNNGG	2 cut(s)	82, 914
BseMII	CTCAG	2 cut(s)	330, 338
BseNI	ACTGG	1 cut(s)	434
BseSI	GKGCMC	1 cut(s)	441
BseXI	GCAGC	1 cut(s)	565
Bsh1236I	CGCG	1 cut(s)	774
BshFI	GGCC	2 cut(s)	75, 105
BsiHKAI	GWGCWC	2 cut(s)	441, 545
BsiHKCI	CYCGRG	1 cut(s)	571
BsiSI	CCGG	3 cut(s)	250, 490, 899
BslFI	GGGAC	1 cut(s)	462
BslI	CCNNNNNNNGG	2 cut(s)	82, 914
BsmFI	GGGAC	1 cut(s)	462
BsmI	GAATGC	2 cut(s)	372, 660
BsnI	GGCC	2 cut(s)	75, 105
BsoBI	CYCGRG	1 cut(s)	571
Bsp119I	TTCGAA	1 cut(s)	524
Bsp1286I	GDGCHC	2 cut(s)	441, 545
Bsp13I	TCCGGA	2 cut(s)	249, 898
Bsp143I	GATC	5 cut(s)	25, 136, 531, 823, 835
BspACI	CCGC	6 cut(s)	308, 461, 470, 487, 772, 905
BspANI	GGCC	2 cut(s)	75, 105
BspCNI	CTCAG	2 cut(s)	329, 337
BspEI	TCCGGA	2 cut(s)	249, 898
BspFNI	CGCG	1 cut(s)	774
BspHI	TCATGA	1 cut(s)	133
BspLI	GGNNCC	1 cut(s)	903
BspMI	ACCTGC	1 cut(s)	73
BspT104I	TTCGAA	1 cut(s)	524
BspTI	CTTAAG	1 cut(s)	77
BsrFI	RCCGGY	1 cut(s)	489
BsrI	ACTGG	1 cut(s)	434
BssAI	RCCGGY	1 cut(s)	489
BssECI	CCNNGG	1 cut(s)	195
BssMI	GATC	5 cut(s)	25, 136, 531, 823, 835
BssNI	GRCGYC	1 cut(s)	713
BssT1I	CCWWGG	1 cut(s)	195
Bst2UI	CCWGG	1 cut(s)	15
Bst6I	CTCTTC	1 cut(s)	449
BstACI	GRCGYC	1 cut(s)	713
BstAFI	CTTAAG	1 cut(s)	77
BstBI	TTCGAA	1 cut(s)	524
BstC8I	GCNNGC	4 cut(s)	472, 610, 658, 831
BstDEI	CTNAG	4 cut(s)	316, 324, 695, 741
BstENI	CCTNNNNNAGG	1 cut(s)	80
BstFNI	CGCG	1 cut(s)	774
BstH2I	RGCGCY	1 cut(s)	657
BstHHI	GCGC	3 cut(s)	372, 614, 656
BstKTI	GATC	5 cut(s)	28, 139, 534, 826, 838
BstMBI	GATC	5 cut(s)	25, 136, 531, 823, 835
BstMWI	GCNNNNNNNGC	4 cut(s)	169, 378, 467, 751
BstNI	CCWGG	1 cut(s)	15
BstPAI	GACNNNNGTC	1 cut(s)	257
BstSCI	CCNGG	1 cut(s)	13
BstSLI	GKGCMC	1 cut(s)	441
BstUI	CGCG	1 cut(s)	774
BstV1I	GCAGC	1 cut(s)	565
BstV2I	GAAGAC	1 cut(s)	338
BsuRI	GGCC	2 cut(s)	75, 105
BtrI	CACGTC	3 cut(s)	290, 498, 866
BtsI	GCAGTG	1 cut(s)	207
BtsIMutI	CAGTG	4 cut(s)	207, 213, 240, 441
BveI	ACCTGC	1 cut(s)	73
Cac8I	GCNNGC	4 cut(s)	472, 610, 658, 831
CciI	TCATGA	1 cut(s)	133
CfoI	GCGC	3 cut(s)	372, 614, 656
Cfr10I	RCCGGY	1 cut(s)	489
Cfr13I	GGNCC	1 cut(s)	492
CseI	GACGC	1 cut(s)	702
Csp6I	GTAC	1 cut(s)	180
CviAII	CATG	9 cut(s)	44, 101, 134, 152, 175, 404, 605, 709, 731
CviQI	GTAC	1 cut(s)	180
DdeI	CTNAG	4 cut(s)	316, 324, 695, 741
DpnI	GATC	5 cut(s)	27, 138, 533, 825, 837
DpnII	GATC	5 cut(s)	25, 136, 531, 823, 835
Eam1104I	CTCTTC	1 cut(s)	449
EarI	CTCTTC	1 cut(s)	449
Eco130I	CCWWGG	1 cut(s)	195
Eco47I	GGWCC	1 cut(s)	492
Eco88I	CYCGRG	1 cut(s)	571
EcoNI	CCTNNNNNAGG	1 cut(s)	80
EcoRI	GAATTC	1 cut(s)	245
EcoRII	CCWGG	1 cut(s)	13
EcoT14I	CCWWGG	1 cut(s)	195
ErhI	CCWWGG	1 cut(s)	195
FaeI	CATG	9 cut(s)	47, 104, 137, 155, 178, 407, 608, 712, 734
FalI	AAGNNNNNCTT	4 cut(s)	381, 413, 771, 803
FaqI	GGGAC	1 cut(s)	462
FatI	CATG	9 cut(s)	43, 100, 133, 151, 174, 403, 604, 708, 730
FauI	CCCGC	2 cut(s)	463, 494
FbaI	TGATCA	2 cut(s)	25, 823
Fnu4HI	GCNGC	2 cut(s)	554, 905
Fsp4HI	GCNGC	2 cut(s)	554, 905
GlaI	GCGC	3 cut(s)	371, 613, 655
GluI	GCNGC	2 cut(s)	554, 905
HaeII	RGCGCY	1 cut(s)	657
HaeIII	GGCC	2 cut(s)	75, 105
HapII	CCGG	3 cut(s)	250, 490, 899
HgaI	GACGC	1 cut(s)	702
HhaI	GCGC	3 cut(s)	372, 614, 656
Hin1I	GRCGYC	1 cut(s)	713
Hin1II	CATG	9 cut(s)	47, 104, 137, 155, 178, 407, 608, 712, 734
Hin6I	GCGC	3 cut(s)	370, 612, 654
HinP1I	GCGC	3 cut(s)	370, 612, 654
HincII	GTYRAC	2 cut(s)	313, 338
HindII	GTYRAC	2 cut(s)	313, 338
HinfI	GANTC	6 cut(s)	4, 200, 334, 482, 581, 801
HpaII	CCGG	3 cut(s)	250, 490, 899
HphI	GGTGA	2 cut(s)	26, 101
Hpy166II	GTNNAC	6 cut(s)	53, 88, 313, 338, 439, 495
Hpy188I	TCNGA	2 cut(s)	457, 586
Hpy188III	TCNNGA	6 cut(s)	134, 250, 280, 293, 479, 899
Hpy8I	GTNNAC	6 cut(s)	53, 88, 313, 338, 439, 495
Hpy99I	CGWCG	1 cut(s)	263
HpyAV	CCTTC	2 cut(s)	103, 116
HpyCH4IV	ACGT	3 cut(s)	289, 497, 865
HpyCH4V	TGCA	2 cut(s)	439, 682
HpyF10VI	GCNNNNNNNGC	4 cut(s)	169, 378, 467, 751
HpyF3I	CTNAG	4 cut(s)	316, 324, 695, 741
HpySE526I	ACGT	3 cut(s)	289, 497, 865
Hsp92I	GRCGYC	1 cut(s)	713
Hsp92II	CATG	9 cut(s)	47, 104, 137, 155, 178, 407, 608, 712, 734
HspAI	GCGC	3 cut(s)	370, 612, 654
Kpn2I	TCCGGA	2 cut(s)	249, 898
Ksp22I	TGATCA	2 cut(s)	25, 823
Kzo9I	GATC	5 cut(s)	25, 136, 531, 823, 835
LmnI	GCTCC	2 cut(s)	548, 901
Lsp1109I	GCAGC	1 cut(s)	565
LweI	GCATC	1 cut(s)	448
MaeII	ACGT	3 cut(s)	289, 497, 865
MaeIII	GTNAC	2 cut(s)	225, 861
MalI	GATC	5 cut(s)	27, 138, 533, 825, 837
MboI	GATC	5 cut(s)	25, 136, 531, 823, 835
MboII	GAAGA	4 cut(s)	338, 368, 436, 863
MhlI	GDGCHC	2 cut(s)	441, 545
MluCI	AATT	2 cut(s)	245, 526
MlyI	GAGTC	4 cut(s)	343, 476, 590, 810
MmeI	TCCRAC	1 cut(s)	564
MnlI	CCTC	7 cut(s)	21, 77, 287, 351, 360, 452, 826
MroI	TCCGGA	2 cut(s)	249, 898
MseI	TTAA	2 cut(s)	78, 114
MslI	CAYNNNNRTG	1 cut(s)	573
MspA1I	CMGCKG	1 cut(s)	833
MspCI	CTTAAG	1 cut(s)	77
MspI	CCGG	3 cut(s)	250, 490, 899
MspR9I	CCNGG	1 cut(s)	15
Mva1269I	GAATGC	2 cut(s)	372, 660
MvaI	CCWGG	1 cut(s)	15
MvnI	CGCG	1 cut(s)	774
MwoI	GCNNNNNNNGC	4 cut(s)	169, 378, 467, 751
NdeII	GATC	5 cut(s)	25, 136, 531, 823, 835
NlaIII	CATG	9 cut(s)	47, 104, 137, 155, 178, 407, 608, 712, 734
NlaIV	GGNNCC	1 cut(s)	903
NmeAIII	GCCGAG	1 cut(s)	604
NmuCI	GTSAC	1 cut(s)	861
NspV	TTCGAA	1 cut(s)	524
OliI	CACNNNNGTG	1 cut(s)	573
PaeR7I	CTCGAG	1 cut(s)	571
PagI	TCATGA	1 cut(s)	133
PctI	GAATGC	2 cut(s)	372, 660
PfeI	GAWTC	1 cut(s)	200
PkrI	GCNGC	2 cut(s)	555, 906
PleI	GAGTC	4 cut(s)	342, 476, 589, 809
PpsI	GAGTC	4 cut(s)	342, 476, 589, 809
PshAI	GACNNNNGTC	1 cut(s)	257
Psp6I	CCWGG	1 cut(s)	13
PspGI	CCWGG	1 cut(s)	13
PspN4I	GGNNCC	1 cut(s)	903
PspPI	GGNCC	1 cut(s)	492
PspXI	VCTCGAGB	1 cut(s)	571
PvuII	CAGCTG	1 cut(s)	833
RsaI	GTAC	1 cut(s)	181
RsaNI	GTAC	1 cut(s)	180
RseI	CAYNNNNRTG	1 cut(s)	573
SaqAI	TTAA	2 cut(s)	78, 114
SatI	GCNGC	2 cut(s)	554, 905
Sau3AI	GATC	5 cut(s)	25, 136, 531, 823, 835
Sau96I	GGNCC	1 cut(s)	492
SchI	GAGTC	4 cut(s)	343, 476, 590, 810
ScrFI	CCNGG	1 cut(s)	15
SduI	GDGCHC	2 cut(s)	441, 545
SfaNI	GCATC	1 cut(s)	448
Sfr274I	CTCGAG	1 cut(s)	571
SfuI	TTCGAA	1 cut(s)	524
SinI	GGWCC	1 cut(s)	492
SlaI	CTCGAG	1 cut(s)	571
SmiMI	CAYNNNNRTG	1 cut(s)	573
SmlI	CTYRAG	2 cut(s)	77, 571
SmoI	CTYRAG	2 cut(s)	77, 571
Sse9I	AATT	2 cut(s)	245, 526
SsiI	CCGC	6 cut(s)	308, 461, 470, 487, 772, 905
StyD4I	CCNGG	1 cut(s)	13
StyI	CCWWGG	1 cut(s)	195
TaiI	ACGT	3 cut(s)	292, 500, 868
TaqI	TCGA	5 cut(s)	524, 572, 736, 750, 799
TasI	AATT	2 cut(s)	245, 526
TauI	GCSGC	1 cut(s)	907
TfiI	GAWTC	1 cut(s)	200
Tru1I	TTAA	2 cut(s)	78, 114
Tru9I	TTAA	2 cut(s)	78, 114
TscAI	CASTG	4 cut(s)	214, 220, 247, 441
TseFI	GTSAC	1 cut(s)	861
TseI	GCWGC	1 cut(s)	553
Tsp45I	GTSAC	1 cut(s)	861
TspDTI	ATGAA	3 cut(s)	10, 660, 799
TspRI	CASTG	4 cut(s)	214, 220, 247, 441
Vha464I	CTTAAG	1 cut(s)	77
VneI	GTGCAC	1 cut(s)	437
VpaK11BI	GGWCC	1 cut(s)	492
XagI	CCTNNNNNAGG	1 cut(s)	80
XapI	RAATTY	2 cut(s)	245, 526
XhoI	CTCGAG	1 cut(s)	571

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.