FvH4_6g53931

Mitochondrial protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0003077
Physical Location & Seq
Forward (+)
39460349 .. 39462743
2395 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g53931.t1

Sequence Viewer

Length: 1032 bp
ATGGGTATTTCTGATAAAATAGAAGGCAGATGGCTCAATAGAACGCTACAAGGCTCGACTGGTCGCCAAGGGATTCCACCAACAGCAAGCGATGATCAACTCCTTCAAACCTTCATTACTACCCTTGGGCGCGAGTTTGACATCAAGGACTTAGGTCCGCTCCATTATTTTCTGGGCTTGCAGGTTCATACAGTATCTCAAGGGTTGCATATCAATCAGCTTAAATATGCACATGATCTTCTTCTAAAGCATGACCTTCTTCTTCGTAAGCCTGCCAGTACACCTATGTCTGCCAAGACCAACCTCACTGCCACTGATGGTGCTCTACTCCCTAACCCCACACCGTTTCGTGAGCTTGTTGGATCATTGCAGTACCTCACCATCACTCGACCTGACATTGCCTTTGCAGTTAACACAGTTTCCCAGTTCATGAGCCAACCACGTGTGCCTCATTTTATTGCTGTGAAACGCATCCTCCGTTACATAAAAGGGTCTCTTAGTCATGGGTTGTTGTTTACTCCGCAACAAGGTACTGCTTGTCTTTCGGCATATTCTGATGCTGACTGGGCTGGTTGTCCGGATTCTCGTCGCTCAACATCTGGCTATCTTGTGTACCTTGGCTCTAATCTTATCTCATGGTGTTCAAAGAAGCAACCAACAATTGCTCGTTCTAGTGCGGAGTCCGAATATCGCTCTTTGGCCCATGCAAGTGCTGAAACAACTTGGCTGGGATACTTATTGTATGAACTTGGTGTTCGGATTCAGTATCTTGTTCAACTGCACTGTGACAATTTGAGTGCCACTTATATGGCTTCCAACCCTGTTTTCCACGCACGCACCAAACATATCGAGCTTGACTATCACTTTGTCCGGGAAAAAGTTGCTTGTGGAAGTCACCATGTATGCTTCATTCCGTCCAAGGATCAGCCAGCAGATTTACTCACCAAACCACTTCATAAATCCCACCATATGCTTGATCTTTTTCAGCAAACTTGTCCATCCAAGATCGTCAAGTTTGAGGGGGGCTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_2 gag_pre-integrs

Protein Analysis

344

Amino Acids

38.29

Weight (kDa)

8.93

Isoelectric Point (pI)

45.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_2 PF07727 28 - 97 5.3e-07 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 172
AccBSI CCGCTC 1 cut(s) 160
AccII CGCG 1 cut(s) 132
AccIII TCCGGA 1 cut(s) 577
AciI CCGC 3 cut(s) 158, 521, 677
AclWI GGATC 2 cut(s) 370, 930
AcvI CACGTG 1 cut(s) 443
AfaI GTAC 4 cut(s) 280, 374, 532, 614
AfiI CCNNNNNNNGG 1 cut(s) 527
AflIII ACRYGT 1 cut(s) 442
AgsI TTSAA 3 cut(s) 107, 645, 776
AjuI GAANNNNNNNTTGG 2 cut(s) 809, 841
AluBI AGCT 3 cut(s) 220, 355, 853
AluI AGCT 3 cut(s) 220, 355, 853
Alw21I GWGCWC 1 cut(s) 325
Alw26I GTCTC 1 cut(s) 498
AlwI GGATC 2 cut(s) 370, 930
Aor13HI TCCGGA 1 cut(s) 577
AoxI GGCC 1 cut(s) 699
ArsI GACNNNNNNTTYG 4 cut(s) 386, 418, 848, 880
AspLEI GCGC 1 cut(s) 132
AspS9I GGNCC 2 cut(s) 155, 700
AsuC2I CCSGG 1 cut(s) 872
AsuHPI GGTGA 3 cut(s) 370, 887, 934
AvaII GGWCC 1 cut(s) 155
BbrPI CACGTG 1 cut(s) 443
Bbv12I GWGCWC 1 cut(s) 325
BccI CCATC 4 cut(s) 24, 311, 389, 1006
BciVI GTATCC 1 cut(s) 725
BclI TGATCA 1 cut(s) 94
BcnI CCSGG 1 cut(s) 872
BcoDI GTCTC 1 cut(s) 498
BfaI CTAG 1 cut(s) 672
BfuAI ACCTGC 1 cut(s) 172
BfuI GTATCC 1 cut(s) 725
Bme1390I CCNGG 1 cut(s) 872
Bme18I GGWCC 1 cut(s) 155
BmgT120I GGNCC 2 cut(s) 155, 700
BmrFI CCNGG 1 cut(s) 872
BmrI ACTGGG 2 cut(s) 418, 574
BmsI GCATC 2 cut(s) 480, 547
BmuI ACTGGG 2 cut(s) 418, 574
BoxI GACNNNNGTC 1 cut(s) 153
BpuEI CTTGAG 1 cut(s) 183
BpuMI CCSGG 1 cut(s) 872
BsaAI YACGTR 1 cut(s) 443
BsaI GGTCTC 1 cut(s) 498
BsaJI CCNNGG 4 cut(s) 67, 124, 616, 918
BsaWI WCCGGW 1 cut(s) 577
BsaXI ACNNNNNCTCC 2 cut(s) 459, 489
Bsc4I CCNNNNNNNGG 1 cut(s) 527
Bse1I ACTGG 4 cut(s) 64, 276, 424, 569
Bse3DI GCAATG 2 cut(s) 365, 396
BseAI TCCGGA 1 cut(s) 577
BseDI CCNNGG 4 cut(s) 67, 124, 616, 918
BseGI GGATG 2 cut(s) 471, 998
BseLI CCNNNNNNNGG 1 cut(s) 527
BseMI GCAATG 2 cut(s) 365, 396
BseNI ACTGG 4 cut(s) 64, 276, 424, 569
BseYI CCCAGC 1 cut(s) 727
BsgI GTGCAG 1 cut(s) 764
Bsh1236I CGCG 1 cut(s) 132
BshFI GGCC 1 cut(s) 701
BsiHKAI GWGCWC 1 cut(s) 325
BsiSI CCGG 2 cut(s) 578, 871
BslI CCNNNNNNNGG 1 cut(s) 527
BsmAI GTCTC 1 cut(s) 498
BsnI GGCC 1 cut(s) 701
Bso31I GGTCTC 1 cut(s) 498
Bsp1286I GDGCHC 1 cut(s) 325
Bsp13I TCCGGA 1 cut(s) 577
Bsp143I GATC 6 cut(s) 94, 235, 362, 922, 976, 1005
BspACI CCGC 3 cut(s) 158, 521, 677
BspANI GGCC 1 cut(s) 701
BspEI TCCGGA 1 cut(s) 577
BspFNI CGCG 1 cut(s) 132
BspHI TCATGA 1 cut(s) 429
BspMI ACCTGC 1 cut(s) 172
BspPI GGATC 2 cut(s) 370, 930
BspTNI GGTCTC 1 cut(s) 498
BsrBI CCGCTC 1 cut(s) 160
BsrDI GCAATG 2 cut(s) 365, 396
BsrI ACTGG 4 cut(s) 64, 276, 424, 569
BssECI CCNNGG 4 cut(s) 67, 124, 616, 918
BssMI GATC 6 cut(s) 94, 235, 362, 922, 976, 1005
BssT1I CCWWGG 4 cut(s) 67, 124, 616, 918
Bst4CI ACNGT 4 cut(s) 193, 345, 418, 785
BstBAI YACGTR 1 cut(s) 443
BstC8I GCNNGC 5 cut(s) 88, 179, 273, 835, 930
BstDEI CTNAG 2 cut(s) 151, 497
BstF5I GGATG 2 cut(s) 471, 998
BstFNI CGCG 1 cut(s) 132
BstHHI GCGC 1 cut(s) 132
BstKTI GATC 6 cut(s) 97, 238, 365, 925, 979, 1008
BstMAI GTCTC 1 cut(s) 498
BstMBI GATC 6 cut(s) 94, 235, 362, 922, 976, 1005
BstMWI GCNNNNNNNGC 1 cut(s) 566
BstPAI GACNNNNGTC 1 cut(s) 153
BstSCI CCNGG 1 cut(s) 870
BstUI CGCG 1 cut(s) 132
BstXI CCANNNNNNTGG 1 cut(s) 808
BsuI GTATCC 1 cut(s) 725
BsuRI GGCC 1 cut(s) 701
BtgZI GCGATG 1 cut(s) 105
BtsCI GGATG 2 cut(s) 471, 998
BtsI GCAGTG 1 cut(s) 306
BtsIMutI CAGTG 3 cut(s) 306, 312, 781
BveI ACCTGC 1 cut(s) 172
Cac8I GCNNGC 5 cut(s) 88, 179, 273, 835, 930
CciI TCATGA 1 cut(s) 429
CfoI GCGC 1 cut(s) 132
Cfr13I GGNCC 2 cut(s) 155, 700
Csp6I GTAC 4 cut(s) 279, 373, 531, 613
CviAII CATG 7 cut(s) 233, 251, 430, 503, 636, 704, 899
CviQI GTAC 4 cut(s) 279, 373, 531, 613
DdeI CTNAG 2 cut(s) 151, 497
DpnI GATC 6 cut(s) 96, 237, 364, 924, 978, 1007
DpnII GATC 6 cut(s) 94, 235, 362, 922, 976, 1005
Eco130I CCWWGG 4 cut(s) 67, 124, 616, 918
Eco31I GGTCTC 1 cut(s) 498
Eco47I GGWCC 1 cut(s) 155
Eco72I CACGTG 1 cut(s) 443
EcoT14I CCWWGG 4 cut(s) 67, 124, 616, 918
ErhI CCWWGG 4 cut(s) 67, 124, 616, 918
FaeI CATG 7 cut(s) 236, 254, 433, 506, 639, 707, 902
FalI AAGNNNNNCTT 2 cut(s) 480, 512
FatI CATG 7 cut(s) 232, 250, 429, 502, 635, 703, 898
FauNDI CATATG 1 cut(s) 969
FbaI TGATCA 1 cut(s) 94
FokI GGATG 2 cut(s) 458, 985
FspBI CTAG 1 cut(s) 672
GlaI GCGC 1 cut(s) 131
GsaI CCCAGC 1 cut(s) 731
HaeIII GGCC 1 cut(s) 701
HapII CCGG 2 cut(s) 578, 871
HhaI GCGC 1 cut(s) 132
Hin1II CATG 7 cut(s) 236, 254, 433, 506, 639, 707, 902
Hin6I GCGC 1 cut(s) 130
HinP1I GCGC 1 cut(s) 130
HincII GTYRAC 1 cut(s) 412
HindII GTYRAC 1 cut(s) 412
HinfI GANTC 4 cut(s) 73, 581, 680, 760
HpaI GTTAAC 1 cut(s) 412
HpaII CCGG 2 cut(s) 578, 871
HphI GGTGA 3 cut(s) 370, 887, 934
Hpy166II GTNNAC 4 cut(s) 281, 412, 516, 613
Hpy188I TCNGA 4 cut(s) 13, 556, 685, 759
Hpy188III TCNNGA 3 cut(s) 350, 430, 578
Hpy8I GTNNAC 4 cut(s) 281, 412, 516, 613
Hpy99I CGWCG 1 cut(s) 591
HpyAV CCTTC 4 cut(s) 17, 113, 121, 266
HpyCH4III ACNGT 4 cut(s) 193, 345, 418, 785
HpyCH4IV ACGT 1 cut(s) 442
HpyCH4V TGCA 7 cut(s) 181, 208, 230, 370, 407, 707, 781
HpyF10VI GCNNNNNNNGC 1 cut(s) 566
HpyF3I CTNAG 2 cut(s) 151, 497
HpySE526I ACGT 1 cut(s) 442
Hsp92II CATG 7 cut(s) 236, 254, 433, 506, 639, 707, 902
HspAI GCGC 1 cut(s) 130
Kpn2I TCCGGA 1 cut(s) 577
Ksp22I TGATCA 1 cut(s) 94
KspAI GTTAAC 1 cut(s) 412
Kzo9I GATC 6 cut(s) 94, 235, 362, 922, 976, 1005
LmnI GCTCC 1 cut(s) 165
LweI GCATC 2 cut(s) 480, 547
MaeI CTAG 1 cut(s) 672
MaeII ACGT 1 cut(s) 442
MaeIII GTNAC 3 cut(s) 479, 785, 893
MalI GATC 6 cut(s) 96, 237, 364, 924, 978, 1007
MbiI CCGCTC 1 cut(s) 160
MboI GATC 6 cut(s) 94, 235, 362, 922, 976, 1005
MboII GAAGA 4 cut(s) 230, 233, 251, 254
MfeI CAATTG 1 cut(s) 660
MhlI GDGCHC 1 cut(s) 325
MluCI AATT 2 cut(s) 660, 790
MlyI GAGTC 1 cut(s) 689
MmeI TCCRAC 2 cut(s) 340, 840
MnlI CCTC 5 cut(s) 314, 386, 459, 485, 1012
MroI TCCGGA 1 cut(s) 577
MseI TTAA 2 cut(s) 222, 411
MslI CAYNNNNRTG 2 cut(s) 708, 806
MspI CCGG 2 cut(s) 578, 871
MspR9I CCNGG 1 cut(s) 872
MunI CAATTG 1 cut(s) 660
MvnI CGCG 1 cut(s) 132
MwoI GCNNNNNNNGC 1 cut(s) 566
NciI CCSGG 1 cut(s) 872
NdeI CATATG 1 cut(s) 969
NdeII GATC 6 cut(s) 94, 235, 362, 922, 976, 1005
NlaIII CATG 7 cut(s) 236, 254, 433, 506, 639, 707, 902
NmuCI GTSAC 2 cut(s) 785, 893
PagI TCATGA 1 cut(s) 429
PcsI WCGNNNNNNNCGW 1 cut(s) 475
PfeI GAWTC 3 cut(s) 73, 581, 760
PfoI TCCNGGA 1 cut(s) 870
PleI GAGTC 1 cut(s) 688
PmaCI CACGTG 1 cut(s) 443
PmlI CACGTG 1 cut(s) 443
PpsI GAGTC 1 cut(s) 688
Ppu21I YACGTR 1 cut(s) 443
PshAI GACNNNNGTC 1 cut(s) 153
PspCI CACGTG 1 cut(s) 443
PspFI CCCAGC 1 cut(s) 727
PspPI GGNCC 2 cut(s) 155, 700
RsaI GTAC 4 cut(s) 280, 374, 532, 614
RsaNI GTAC 4 cut(s) 279, 373, 531, 613
RseI CAYNNNNRTG 2 cut(s) 708, 806
SaqAI TTAA 2 cut(s) 222, 411
Sau3AI GATC 6 cut(s) 94, 235, 362, 922, 976, 1005
Sau96I GGNCC 2 cut(s) 155, 700
SchI GAGTC 1 cut(s) 689
ScrFI CCNGG 1 cut(s) 872
SduI GDGCHC 1 cut(s) 325
SfaNI GCATC 2 cut(s) 480, 547
SinI GGWCC 1 cut(s) 155
SmiMI CAYNNNNRTG 2 cut(s) 708, 806
SmlI CTYRAG 1 cut(s) 198
SmoI CTYRAG 1 cut(s) 198
Sse9I AATT 2 cut(s) 660, 790
SsiI CCGC 3 cut(s) 158, 521, 677
SspMI CTAG 1 cut(s) 672
StyD4I CCNGG 1 cut(s) 870
StyI CCWWGG 4 cut(s) 67, 124, 616, 918
TaaI ACNGT 4 cut(s) 193, 345, 418, 785
TaiI ACGT 1 cut(s) 445
TaqI TCGA 3 cut(s) 56, 388, 849
TasI AATT 2 cut(s) 660, 790
TatI WGTACW 1 cut(s) 278
TfiI GAWTC 3 cut(s) 73, 581, 760
Tru1I TTAA 2 cut(s) 222, 411
Tru9I TTAA 2 cut(s) 222, 411
TscAI CASTG 3 cut(s) 313, 319, 788
TseFI GTSAC 2 cut(s) 785, 893
Tsp45I GTSAC 2 cut(s) 785, 893
TspDTI ATGAA 6 cut(s) 103, 176, 418, 759, 898, 944
TspGWI ACGGA 2 cut(s) 467, 903
TspRI CASTG 3 cut(s) 313, 319, 788
VpaK11BI GGWCC 1 cut(s) 155
XspI CTAG 1 cut(s) 672
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.