Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0003077

Physical Location & Seq

Genomic Coordinates Forward (+)

6366152 .. 6369880

Gene Structure 3729 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g11221.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2520 bp

ATGGCTTCCAACAACTATGGTGTGTATCACTCATCCTTTCCGCACTGGCAACATGTCGCATCTCCGTATCTGATGCAGCAGCGACATCATGCGTCTCGTTTCTCTCAACGTCCACATCACATGTCAAGTCCCATCCATGACGTCCCGTTTGCTGGTGTCCATTCTGCTGTTGACCCGAACTGGTATCCGGATACAGGCGCAACCCACCACATGACGGCTTTACCAGTTCAATCAAATTCTGATCCCATAGAATTTGTCTCATTATCACTCCCTCCGCAGGCCCGACTGCCGAGCCCATGGTCATCCCCATCTGACCCCGGCCCAACGGAGCCCAATTCCTATTCTCAACCAGTCACAACATCACCAACACACACAGAACCATTACTTCTTCCTCCCACGACATCTCCTTCACTGTCATCAACGCCCCACTCCCTACCCACCACCGCCGGCGCCTCTGGTCCCCCATCGTCAATATCCCTAGCGCCGCCTCTGCTCCAGTACAGTCGCTGTCCTCTTCAACAATCCACGGCGGCACCTCATCTCTCTCCTCCAGCCGTCGCACCATCCTCTCCACCTCCCATCACAACGCCGATCTGCGAAGCACCTCCGCCATCATCTCCACCATCTGCTCCTTCTCCGGCATCGGTCGCATCTCCCCAACACACCTCCATCAACCACCAGACCTCCGCCTCCATAGAGACCGCCTCGGCTGCCAATGCTCTCCTTCCCTTCGCCACCCAGAATGGTGACCCAATCCTGCCATCATCAGTTACGGCAGCACCACCTCCAGATCTGCCCGTTGTCCCACCTCCTGCTGCAGACACCTCCCATAGAATTCAAACCCGCTCTCGTTCCGGCATCTCAAAACCCAAACCTCTTCCCGATGGGATGGTCAGGTATCCAATTCCTCGTGCTCTTCTATCTGTTATTGCTGATATGGAACCTACTTGCTACACCCAGGCCTCTAAATCGAAGGAATGGCGTGCAGCCATGACTGAGGAAATAAATGCGCTGATAAAAAATCAAACTTGGTCTCTTGTCCCCTCATCACCTACGCAGAACACAGTTGGTTGTAAATGGGTTTTTCGGATCAAGCGTCTTCCTGACGGCACTGTGGATCGCTACAAAGCAAGACTTGTTGCCAAGGGATTCCACCAACGACAAGGCATCGATTATCAGGAAACATTCAGTCCAGTCATTAAACCTGCCACAATCCGTACTGTTCTTGCAATTGCGGTCTCTAGAGGCTGGAAGCTTCGTCAACTTGATGTAAAGAATGCCTTCCTTAACGACTTTCTTGCTGAAGACGTTTACATGACTCAACCCCCCGGCTTTGTTGATCCTAATCACCCAACACATGTCTGCAAGCTTCATAGGTCTCTTTATGGACTAAAGCAAGCTCCTCGTGCCTGGTTCCATCGAATCGGCAGCTTTCTTCTCTCTGCAGGCTTTCGGCAAAGTAAGGCTGATAATTCTTTGTTTATCTTTCACTACGGGCCTCAGACCATCTATCTTCTCTTGTACGTCGATGACATTATTGTTACTGGCAGCAGTGATGGAATTGTTGAGAGTTTTATTCAGGCCCTTGGTCGTGGCTTTGACATAAAAGATTTGGGCTCTCTTCACTATTTTCTTGGCTTACAGGTCTCCTCATCCTCAACTGGTCTTCATATTAACCAACTTAAGTATGCACATGACATACTACAGAAGCATGGTCTTCTTCTCAGCCAACCTATGAGCACCCCGTTAGCCGCTAAGCCAATTCTCACGGCAACTGATGGTGATCTGCTTGAAAATCCAACTGTGTTTCGTGAGCTAGTTGGGTTTCTTCAGTATCTCACAATCACACGTCCGGATATCAGCTTTGCTGTGAATTCAGTTGCCCAATTCATGAGTCAACCACGCACCACTCATCTCATTGCTGCGAGGCGTATTCTTCGGTATGTTAAAGGCACTATTGATTATGGGCTATTCTTTCGTGCTCAACAACTGCCTGTTCTTCTCTCTGCTTACTCCGACGCTGACTGGGCCGGCTGTCCTGATTCACGCCGCTCCACTTCCGGCTATCTTGTGTACCTTGGCTCCAATCTCATATCCTGGTGCTCCAAGAAACAGCCTACAGTGGCTCGCTCTAGTGCTGAAGCAGAGTATCGCTCTCTCGCTCATGCTTCTGCTGAAACTACCTGGTTAGGCTATTTACTCTTTGAACTTGGTGTCCGCATTCATCTCCCTATTATGCTTCATTGCGACAACCTTAGTGCCACTTATATGGCTTCTAACCCAGTGTTCCATGCCCGCACCAAACACATTGAGCTTAACTATCATTTTGTACGTGAAAAGGTCGCCCTTGGTAGCCACCGTGTCTGTTACATCCCTTCAGTTGATCAGCCTGCTGACCTCCTTACCAAACCTCTCCATAAACACCGCCATACTGCCTTGTGCCTCAAACTTGTCCGGCCAAGGCCGCCAAGTTTGCGGGGGGATGTCAGAGAGCAATCACAAATTCAATCACCAGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

RVT_2 Retrotran_gag_2 Retrotran_gag_3

Protein Analysis

840

Amino Acids

92.04

Weight (kDa)

9.21

Isoelectric Point (pI)

55.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_2	PF07727	341 - 583	1.3e-66	Reverse transcriptase (RNA-dependent DNA polymerase)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003077)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATMG00810
fragaria_vesca	FvH4_3g08011 FvH4_5g11221 FvH4_6g11491 FvH4_6g53931 FvH4_6g53931 FvH4_6g53931 FvH4_6g53931
rosa_chinensis	RchiOBHm_Chr1g0347991 RchiOBHm_Chr1g0348001 RchiOBHm_Chr1g0350631 RchiOBHm_Chr2g0100361 RchiOBHm_Chr2g0102931 RchiOBHm_Chr2g0122981 RchiOBHm_Chr2g0124571 RchiOBHm_Chr2g0134981 RchiOBHm_Chr4g0410941 RchiOBHm_Chr4g0410951 RchiOBHm_Chr5g0026511 RchiOBHm_Chr5g0078261 RchiOBHm_Chr5g0082731 RchiOBHm_Chr6g0261771 RchiOBHm_Chr6g0261781 RchiOBHm_Chr6g0276521 RchiOBHm_Chr6g0310171 RchiOBHm_Chr7g0180521 RchiOBHm_Chr7g0182281 RchiOBHm_Chr7g0231781 RchiOBHm_Chr7g0231971
rosa_roxburghii	Rroxscaffold_3G00242950
rosa_wichuraiana	Rw0G003700 Rw0G012710 Rw4G014500 Rw4G035380 Rw5G003190 Rw5G018810 Rw7G035270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	144
Acc36I	ACCTGC	1 cut(s)	1213
AccB1I	GGYRCC	2 cut(s)	449, 532
AccBSI	CCGCTC	2 cut(s)	846, 2052
AccIII	TCCGGA	2 cut(s)	187, 1852
AclWI	GGATC	4 cut(s)	236, 1097, 1125, 1334
AcoI	YGGCCR	1 cut(s)	2456
AcsI	RAATTY	5 cut(s)	235, 251, 834, 1873, 2502
AcuI	CTGAAG	4 cut(s)	1323, 1814, 2160, 2361
AcyI	GRCGYC	2 cut(s)	141, 450
AfaI	GTAC	5 cut(s)	500, 1219, 1523, 2075, 2331
AfiI	CCNNNNNNNGG	4 cut(s)	152, 194, 214, 277
AflII	CTTAAG	1 cut(s)	1682
AflIII	ACRYGT	4 cut(s)	52, 120, 1357, 1847
AgsI	TTSAA	6 cut(s)	230, 518, 839, 1793, 2207, 2507
AjiI	CACGTC	1 cut(s)	1850
AjnI	CCWGG	4 cut(s)	957, 1409, 2096, 2183
AleI	CACNNNNGTG	1 cut(s)	2515
AloI	GAACNNNNNNTCC	2 cut(s)	2199, 2231
AluBI	AGCT	7 cut(s)	1255, 1369, 1400, 1431, 1816, 1863, 2314
AluI	AGCT	7 cut(s)	1255, 1369, 1400, 1431, 1816, 1863, 2314
Alw21I	GWGCWC	4 cut(s)	916, 1742, 1984, 2105
Alw26I	GTCTC	7 cut(s)	99, 262, 692, 1038, 1243, 1383, 1651
AlwI	GGATC	4 cut(s)	236, 1097, 1125, 1334
AlwNI	CAGNNNCTG	1 cut(s)	507
Aor13HI	TCCGGA	2 cut(s)	187, 1852
AoxI	GGCC	8 cut(s)	279, 319, 960, 1496, 1581, 2028, 2456, 2462
ApeKI	GCWGC	9 cut(s)	76, 79, 710, 776, 815, 986, 1428, 1548, 1922
ApoI	RAATTY	5 cut(s)	235, 251, 834, 1873, 2502
ArsI	GACNNNNNNTTYG	2 cut(s)	131, 163
Asp700I	GAANNNNTTC	1 cut(s)	1280
AspLEI	GCGC	4 cut(s)	200, 452, 484, 1012
AspS9I	GGNCC	6 cut(s)	280, 320, 458, 1496, 1582, 2028
AsuC2I	CCSGG	2 cut(s)	318, 1329
AsuHPI	GGTGA	6 cut(s)	354, 758, 1041, 1340, 1793, 2502
AvaII	GGWCC	1 cut(s)	458
BanI	GGYRCC	2 cut(s)	449, 532
BanII	GRGCYC	3 cut(s)	296, 333, 1619
BauI	CACGAG	2 cut(s)	909, 1404
BbsI	GAAGAC	4 cut(s)	1091, 1311, 1658, 1709
Bbv12I	GWGCWC	4 cut(s)	916, 1742, 1984, 2105
BbvI	GCAGC	9 cut(s)	88, 91, 697, 788, 802, 998, 1440, 1560, 1909
BceAI	ACGGC	6 cut(s)	231, 539, 543, 789, 1123, 1785
BcgI	CGANNNNNNTGC	4 cut(s)	1280, 1314, 1385, 1419
BciT130I	CCWGG	4 cut(s)	959, 1411, 2098, 2185
BciVI	GTATCC	3 cut(s)	184, 195, 909
BclI	TGATCA	1 cut(s)	2383
BcnI	CCSGG	2 cut(s)	318, 1329
BcoDI	GTCTC	7 cut(s)	99, 262, 692, 1038, 1243, 1383, 1651
BfaI	CTAG	4 cut(s)	479, 1242, 1817, 2133
BfmI	CTRYAG	4 cut(s)	816, 1443, 1703, 2118
BfoI	RGCGCY	2 cut(s)	453, 485
BfrI	CTTAAG	1 cut(s)	1682
BfuAI	ACCTGC	1 cut(s)	1213
BfuI	GTATCC	3 cut(s)	184, 195, 909
BglII	AGATCT	1 cut(s)	790
BlpI	GCTNAGC	1 cut(s)	1755
Bme1390I	CCNGG	6 cut(s)	318, 959, 1329, 1411, 2098, 2185
Bme18I	GGWCC	1 cut(s)	458
BmgBI	CACGTC	1 cut(s)	1850
BmgT120I	GGNCC	6 cut(s)	280, 320, 458, 1496, 1582, 2028
BmiI	GGNNCC	7 cut(s)	330, 451, 460, 534, 942, 1415, 2083
BmrFI	CCNGG	6 cut(s)	318, 959, 1329, 1411, 2098, 2185
BmrI	ACTGGG	2 cut(s)	2035, 2276
BmsI	GCATC	6 cut(s)	63, 68, 650, 659, 867, 1176
BmuI	ACTGGG	2 cut(s)	2035, 2276
BpiI	GAAGAC	4 cut(s)	1091, 1311, 1658, 1709
BplI	GAGNNNNNCTC	4 cut(s)	689, 721, 2138, 2170
BpmI	CTGGAG	3 cut(s)	479, 534, 771
Bpu1102I	GCTNAGC	1 cut(s)	1755
BpuMI	CCSGG	2 cut(s)	318, 1329
Bsa29I	ATCGAT	1 cut(s)	1170
BsaAI	YACGTR	1 cut(s)	2333
BsaBI	GATNNNNATC	2 cut(s)	1344, 1782
BsaHI	GRCGYC	2 cut(s)	141, 450
BsaI	GGTCTC	5 cut(s)	692, 1038, 1243, 1383, 1651
BsaWI	WCCGGW	2 cut(s)	187, 1852
BsaXI	ACNNNNNCTCC	6 cut(s)	388, 418, 668, 698, 2066, 2096
Bsc4I	CCNNNNNNNGG	4 cut(s)	152, 194, 214, 277
Bse118I	RCCGGY	2 cut(s)	446, 2030
Bse3DI	GCAATG	2 cut(s)	1917, 2242
Bse8I	GATNNNNATC	2 cut(s)	1344, 1782
BseAI	TCCGGA	2 cut(s)	187, 1852
BseBI	CCWGG	4 cut(s)	959, 1411, 2098, 2185
BseCI	ATCGAT	1 cut(s)	1170
BseGI	GGATG	8 cut(s)	32, 132, 302, 563, 894, 1652, 2370, 2488
BseJI	GATNNNNATC	2 cut(s)	1344, 1782
BseLI	CCNNNNNNNGG	4 cut(s)	152, 194, 214, 277
BseMI	GCAATG	2 cut(s)	1917, 2242
BseMII	CTCAG	3 cut(s)	987, 1514, 1738
BseRI	GAGGAG	3 cut(s)	537, 1392, 1639
BseXI	GCAGC	9 cut(s)	88, 91, 697, 788, 802, 998, 1440, 1560, 1909
BsgI	GTGCAG	1 cut(s)	1005
Bsh1285I	CGRYCG	1 cut(s)	648
BshFI	GGCC	8 cut(s)	281, 321, 962, 1498, 1583, 2030, 2458, 2464
BshNI	GGYRCC	2 cut(s)	449, 532
BshVI	ATCGAT	1 cut(s)	1170
BsiEI	CGRYCG	1 cut(s)	648
BsiHKAI	GWGCWC	4 cut(s)	916, 1742, 1984, 2105
BslFI	GGGAC	5 cut(s)	114, 128, 444, 788, 1025
BslI	CCNNNNNNNGG	4 cut(s)	152, 194, 214, 277
BsmAI	GTCTC	7 cut(s)	99, 262, 692, 1038, 1243, 1383, 1651
BsmBI	CGTCTC	1 cut(s)	99
BsmFI	GGGAC	5 cut(s)	114, 128, 444, 788, 1025
BsmI	GAATGC	2 cut(s)	1282, 2220
BsnI	GGCC	8 cut(s)	281, 321, 962, 1498, 1583, 2030, 2458, 2464
Bso31I	GGTCTC	5 cut(s)	692, 1038, 1243, 1383, 1651
Bsp1286I	GDGCHC	7 cut(s)	296, 333, 916, 1619, 1742, 1984, 2105
Bsp13I	TCCGGA	2 cut(s)	187, 1852
Bsp143I	GATC	8 cut(s)	241, 591, 790, 1089, 1117, 1339, 1783, 2383
Bsp1720I	GCTNAGC	1 cut(s)	1755
Bsp19I	CCATGG	1 cut(s)	296
BspANI	GGCC	8 cut(s)	281, 321, 962, 1498, 1583, 2030, 2458, 2464
BspCNI	CTCAG	3 cut(s)	988, 1513, 1737
BspDI	ATCGAT	1 cut(s)	1170
BspEI	TCCGGA	2 cut(s)	187, 1852
BspHI	TCATGA	1 cut(s)	1890
BspLI	GGNNCC	7 cut(s)	330, 451, 460, 534, 942, 1415, 2083
BspMAI	CTGCAG	2 cut(s)	820, 1447
BspMI	ACCTGC	1 cut(s)	1213
BspPI	GGATC	4 cut(s)	236, 1097, 1125, 1334
BspQI	GCTCTTC	1 cut(s)	921
BspT107I	GGYRCC	2 cut(s)	449, 532
BspTI	CTTAAG	1 cut(s)	1682
BspTNI	GGTCTC	5 cut(s)	692, 1038, 1243, 1383, 1651
BsrBI	CCGCTC	2 cut(s)	846, 2052
BsrDI	GCAATG	2 cut(s)	1917, 2242
BsrFI	RCCGGY	2 cut(s)	446, 2030
BssAI	RCCGGY	2 cut(s)	446, 2030
BssMI	GATC	8 cut(s)	241, 591, 790, 1089, 1117, 1339, 1783, 2383
BssNI	GRCGYC	2 cut(s)	141, 450
BssSI	CACGAG	2 cut(s)	909, 1404
BssT1I	CCWWGG	6 cut(s)	296, 1143, 1585, 2077, 2347, 2459
Bst2BI	CACGAG	2 cut(s)	909, 1404
Bst2UI	CCWGG	4 cut(s)	959, 1411, 2098, 2185
Bst4CI	ACNGT	8 cut(s)	414, 503, 1066, 1114, 1222, 1804, 2122, 2360
Bst6I	CTCTTC	4 cut(s)	519, 882, 921, 1626
BstACI	GRCGYC	2 cut(s)	141, 450
BstAFI	CTTAAG	1 cut(s)	1682
BstBAI	YACGTR	1 cut(s)	2333
BstDEI	CTNAG	5 cut(s)	996, 1500, 1724, 1755, 2255
BstDSI	CCRYGG	2 cut(s)	296, 525
BstEII	GGTNACC	1 cut(s)	746
BstF5I	GGATG	8 cut(s)	32, 132, 302, 563, 894, 1652, 2370, 2488
BstH2I	RGCGCY	2 cut(s)	453, 485
BstHHI	GCGC	4 cut(s)	200, 452, 484, 1012
BstKTI	GATC	8 cut(s)	244, 594, 793, 1092, 1120, 1342, 1786, 2386
BstMAI	GTCTC	7 cut(s)	99, 262, 692, 1038, 1243, 1383, 1651
BstMBI	GATC	8 cut(s)	241, 591, 790, 1089, 1117, 1339, 1783, 2383
BstMCI	CGRYCG	1 cut(s)	648
BstMWI	GCNNNNNNNGC	8 cut(s)	490, 647, 710, 716, 1406, 2027, 2464, 2473
BstNI	CCWGG	4 cut(s)	959, 1411, 2098, 2185
BstNSI	RCATGY	3 cut(s)	56, 124, 1361
BstPI	GGTNACC	1 cut(s)	746
BstSCI	CCNGG	6 cut(s)	316, 957, 1327, 1409, 2096, 2183
BstSFI	CTRYAG	4 cut(s)	816, 1443, 1703, 2118
BstV1I	GCAGC	9 cut(s)	88, 91, 697, 788, 802, 998, 1440, 1560, 1909
BstV2I	GAAGAC	4 cut(s)	1091, 1311, 1658, 1709
BstX2I	RGATCY	1 cut(s)	790
BstXI	CCANNNNNNTGG	1 cut(s)	2269
BstYI	RGATCY	1 cut(s)	790
Bsu15I	ATCGAT	1 cut(s)	1170
BsuI	GTATCC	3 cut(s)	184, 195, 909
BsuRI	GGCC	8 cut(s)	281, 321, 962, 1498, 1583, 2030, 2458, 2464
BsuTUI	ATCGAT	1 cut(s)	1170
BtgI	CCRYGG	2 cut(s)	296, 525
BtrI	CACGTC	1 cut(s)	1850
BtsCI	GGATG	8 cut(s)	32, 132, 302, 563, 894, 1652, 2370, 2488
BtsI	GCAGTG	1 cut(s)	1558
BtsIMutI	CAGTG	6 cut(s)	43, 410, 1110, 1558, 2127, 2289
BveI	ACCTGC	1 cut(s)	1213
CaiI	CAGNNNCTG	1 cut(s)	507
CciI	TCATGA	1 cut(s)	1890
CfoI	GCGC	4 cut(s)	200, 452, 484, 1012
Cfr10I	RCCGGY	2 cut(s)	446, 2030
Cfr13I	GGNCC	6 cut(s)	280, 320, 458, 1496, 1582, 2028
ClaI	ATCGAT	1 cut(s)	1170
CseI	GACGC	3 cut(s)	81, 1085, 2027
CsiI	ACCWGGT	1 cut(s)	2183
Csp6I	GTAC	5 cut(s)	499, 1218, 1522, 2074, 2330
CviQI	GTAC	5 cut(s)	499, 1218, 1522, 2074, 2330
DdeI	CTNAG	5 cut(s)	996, 1500, 1724, 1755, 2255
DinI	GGCGCC	1 cut(s)	451
DpnI	GATC	8 cut(s)	243, 593, 792, 1091, 1119, 1341, 1785, 2385
DpnII	GATC	8 cut(s)	241, 591, 790, 1089, 1117, 1339, 1783, 2383
EaeI	YGGCCR	1 cut(s)	2456
Eam1104I	CTCTTC	4 cut(s)	519, 882, 921, 1626
EarI	CTCTTC	4 cut(s)	519, 882, 921, 1626
EciI	GGCGGA	2 cut(s)	597, 676
Eco130I	CCWWGG	6 cut(s)	296, 1143, 1585, 2077, 2347, 2459
Eco147I	AGGCCT	1 cut(s)	962
Eco24I	GRGCYC	3 cut(s)	296, 333, 1619
Eco31I	GGTCTC	5 cut(s)	692, 1038, 1243, 1383, 1651
Eco32I	GATATC	1 cut(s)	1858
Eco47I	GGWCC	1 cut(s)	458
Eco57I	CTGAAG	4 cut(s)	1323, 1814, 2160, 2361
Eco91I	GGTNACC	1 cut(s)	746
EcoO109I	RGGNCCY	1 cut(s)	1582
EcoO65I	GGTNACC	1 cut(s)	746
EcoRI	GAATTC	2 cut(s)	834, 1873
EcoRII	CCWGG	4 cut(s)	957, 1409, 2096, 2183
EcoRV	GATATC	1 cut(s)	1858
EcoT14I	CCWWGG	6 cut(s)	296, 1143, 1585, 2077, 2347, 2459
EcoT38I	GRGCYC	3 cut(s)	296, 333, 1619
EgeI	GGCGCC	1 cut(s)	451
EheI	GGCGCC	1 cut(s)	451
ErhI	CCWWGG	6 cut(s)	296, 1143, 1585, 2077, 2347, 2459
Esp3I	CGTCTC	1 cut(s)	99
FalI	AAGNNNNNCTT	4 cut(s)	1119, 1151, 1265, 1297
FaqI	GGGAC	5 cut(s)	114, 128, 444, 788, 1025
FauI	CCCGC	3 cut(s)	851, 2303, 2469
FbaI	TGATCA	1 cut(s)	2383
FokI	GGATG	8 cut(s)	19, 119, 289, 550, 901, 1639, 2357, 2495
FriOI	GRGCYC	3 cut(s)	296, 333, 1619
FspBI	CTAG	4 cut(s)	479, 1242, 1817, 2133
GlaI	GCGC	4 cut(s)	199, 451, 483, 1011
GsuI	CTGGAG	3 cut(s)	479, 534, 771
HaeII	RGCGCY	2 cut(s)	453, 485
HaeIII	GGCC	8 cut(s)	281, 321, 962, 1498, 1583, 2030, 2458, 2464
HgaI	GACGC	3 cut(s)	81, 1085, 2027
HhaI	GCGC	4 cut(s)	200, 452, 484, 1012
Hin1I	GRCGYC	2 cut(s)	141, 450
Hin6I	GCGC	4 cut(s)	198, 450, 482, 1010
HinP1I	GCGC	4 cut(s)	198, 450, 482, 1010
HincII	GTYRAC	3 cut(s)	172, 1262, 1898
HindII	GTYRAC	3 cut(s)	172, 1262, 1898
HindIII	AAGCTT	2 cut(s)	1253, 1367
HinfI	GANTC	5 cut(s)	1149, 1318, 1422, 1894, 2042
HphI	GGTGA	6 cut(s)	354, 758, 1041, 1340, 1793, 2502
Hpy166II	GTNNAC	6 cut(s)	113, 172, 1262, 1312, 1898, 2074
Hpy188I	TCNGA	7 cut(s)	72, 241, 313, 1089, 1503, 2017, 2489
Hpy8I	GTNNAC	6 cut(s)	113, 172, 1262, 1312, 1898, 2074
Hpy99I	CGWCG	3 cut(s)	560, 1529, 2021
HpyAV	CCTTC	7 cut(s)	417, 642, 734, 739, 967, 1291, 2385
HpyCH4III	ACNGT	8 cut(s)	414, 503, 1066, 1114, 1222, 1804, 2122, 2360
HpyCH4IV	ACGT	6 cut(s)	109, 141, 1308, 1524, 1849, 2332
HpyCH4V	TGCA	7 cut(s)	76, 818, 986, 1229, 1365, 1445, 1691
HpyF10VI	GCNNNNNNNGC	8 cut(s)	490, 647, 710, 716, 1406, 2027, 2464, 2473
HpyF3I	CTNAG	5 cut(s)	996, 1500, 1724, 1755, 2255
HpySE526I	ACGT	6 cut(s)	109, 141, 1308, 1524, 1849, 2332
Hsp92I	GRCGYC	2 cut(s)	141, 450
HspAI	GCGC	4 cut(s)	198, 450, 482, 1010
KasI	GGCGCC	1 cut(s)	449
Kpn2I	TCCGGA	2 cut(s)	187, 1852
KroI	GCCGGC	2 cut(s)	446, 2030
KroNI	GCCGGC	2 cut(s)	448, 2032
Ksp22I	TGATCA	1 cut(s)	2383
Kzo9I	GATC	8 cut(s)	241, 591, 790, 1089, 1117, 1339, 1783, 2383
LguI	GCTCTTC	1 cut(s)	921
LmnI	GCTCC	7 cut(s)	328, 498, 634, 1405, 2057, 2087, 2108
Lsp1109I	GCAGC	9 cut(s)	88, 91, 697, 788, 802, 998, 1440, 1560, 1909
LweI	GCATC	6 cut(s)	63, 68, 650, 659, 867, 1176
MabI	ACCWGGT	1 cut(s)	2183
MaeI	CTAG	4 cut(s)	479, 1242, 1817, 2133
MaeII	ACGT	6 cut(s)	109, 141, 1308, 1524, 1849, 2332
MaeIII	GTNAC	5 cut(s)	352, 746, 769, 1540, 2366
MalI	GATC	8 cut(s)	243, 593, 792, 1091, 1119, 1341, 1785, 2385
MbiI	CCGCTC	2 cut(s)	846, 2052
MboI	GATC	8 cut(s)	241, 591, 790, 1089, 1117, 1339, 1783, 2383
MfeI	CAATTG	1 cut(s)	1230
MflI	RGATCY	1 cut(s)	790
MhlI	GDGCHC	7 cut(s)	296, 333, 916, 1619, 1742, 1984, 2105
Mly113I	GGCGCC	1 cut(s)	450
MlyI	GAGTC	2 cut(s)	1312, 1903
MmeI	TCCRAC	3 cut(s)	33, 1823, 2040
MreI	CGCCGGCG	1 cut(s)	446
MroI	TCCGGA	2 cut(s)	187, 1852
MroNI	GCCGGC	2 cut(s)	446, 2030
MroXI	GAANNNNTTC	1 cut(s)	1280
MseI	TTAA	6 cut(s)	1200, 1287, 1674, 1683, 1947, 2316
MslI	CAYNNNNRTG	2 cut(s)	2267, 2515
MspCI	CTTAAG	1 cut(s)	1682
MspR9I	CCNGG	6 cut(s)	318, 959, 1329, 1411, 2098, 2185
MunI	CAATTG	1 cut(s)	1230
Mva1269I	GAATGC	2 cut(s)	1282, 2220
MvaI	CCWGG	4 cut(s)	959, 1411, 2098, 2185
MwoI	GCNNNNNNNGC	8 cut(s)	490, 647, 710, 716, 1406, 2027, 2464, 2473
NaeI	GCCGGC	2 cut(s)	448, 2032
NarI	GGCGCC	1 cut(s)	450
NciI	CCSGG	2 cut(s)	318, 1329
NcoI	CCATGG	1 cut(s)	296
NdeII	GATC	8 cut(s)	241, 591, 790, 1089, 1117, 1339, 1783, 2383
NgoMIV	GCCGGC	2 cut(s)	446, 2030
NlaIV	GGNNCC	7 cut(s)	330, 451, 460, 534, 942, 1415, 2083
NmeAIII	GCCGAG	2 cut(s)	315, 686
NmuCI	GTSAC	2 cut(s)	352, 746
NspI	RCATGY	3 cut(s)	56, 124, 1361
OliI	CACNNNNGTG	1 cut(s)	2515
PagI	TCATGA	1 cut(s)	1890
PceI	AGGCCT	1 cut(s)	962
PciI	ACATGT	3 cut(s)	52, 120, 1357
PciSI	GCTCTTC	1 cut(s)	921
PcsI	WCGNNNNNNNCGW	1 cut(s)	1093
PctI	GAATGC	2 cut(s)	1282, 2220
PdiI	GCCGGC	2 cut(s)	448, 2032
PdmI	GAANNNNTTC	1 cut(s)	1280
PfeI	GAWTC	3 cut(s)	1149, 1422, 2042
PleI	GAGTC	2 cut(s)	1312, 1902
PluTI	GGCGCC	1 cut(s)	453
PpsI	GAGTC	2 cut(s)	1312, 1902
Ppu21I	YACGTR	1 cut(s)	2333
PscI	ACATGT	3 cut(s)	52, 120, 1357
Psp6I	CCWGG	4 cut(s)	957, 1409, 2096, 2183
PspEI	GGTNACC	1 cut(s)	746
PspGI	CCWGG	4 cut(s)	957, 1409, 2096, 2183
PspN4I	GGNNCC	7 cut(s)	330, 451, 460, 534, 942, 1415, 2083
PspPI	GGNCC	6 cut(s)	280, 320, 458, 1496, 1582, 2028
PstI	CTGCAG	2 cut(s)	820, 1447
PstNI	CAGNNNCTG	1 cut(s)	507
PsuI	RGATCY	1 cut(s)	790
RsaI	GTAC	5 cut(s)	500, 1219, 1523, 2075, 2331
RsaNI	GTAC	5 cut(s)	499, 1218, 1522, 2074, 2330
RseI	CAYNNNNRTG	2 cut(s)	2267, 2515
SapI	GCTCTTC	1 cut(s)	921
SaqAI	TTAA	6 cut(s)	1200, 1287, 1674, 1683, 1947, 2316
Sau3AI	GATC	8 cut(s)	241, 591, 790, 1089, 1117, 1339, 1783, 2383
Sau96I	GGNCC	6 cut(s)	280, 320, 458, 1496, 1582, 2028
SchI	GAGTC	2 cut(s)	1312, 1903
ScrFI	CCNGG	6 cut(s)	318, 959, 1329, 1411, 2098, 2185
SduI	GDGCHC	7 cut(s)	296, 333, 916, 1619, 1742, 1984, 2105
SexAI	ACCWGGT	1 cut(s)	2183
SfaNI	GCATC	6 cut(s)	63, 68, 650, 659, 867, 1176
SfcI	CTRYAG	4 cut(s)	816, 1443, 1703, 2118
SfoI	GGCGCC	1 cut(s)	451
SgrAI	CRCCGGYG	1 cut(s)	446
SinI	GGWCC	1 cut(s)	458
SmiMI	CAYNNNNRTG	2 cut(s)	2267, 2515
SmlI	CTYRAG	1 cut(s)	1682
SmoI	CTYRAG	1 cut(s)	1682
SseBI	AGGCCT	1 cut(s)	962
SspDI	GGCGCC	1 cut(s)	449
SspMI	CTAG	4 cut(s)	479, 1242, 1817, 2133
StuI	AGGCCT	1 cut(s)	962
StyD4I	CCNGG	6 cut(s)	316, 957, 1327, 1409, 2096, 2183
StyI	CCWWGG	6 cut(s)	296, 1143, 1585, 2077, 2347, 2459
TaaI	ACNGT	8 cut(s)	414, 503, 1066, 1114, 1222, 1804, 2122, 2360
TaiI	ACGT	6 cut(s)	112, 144, 1311, 1527, 1852, 2335
TaqI	TCGA	4 cut(s)	971, 1170, 1420, 1527
TaqII	GACCGA	1 cut(s)	634
TatI	WGTACW	1 cut(s)	498
TauI	GCSGC	5 cut(s)	487, 533, 1754, 2052, 2467
TfiI	GAWTC	3 cut(s)	1149, 1422, 2042
Tru1I	TTAA	6 cut(s)	1200, 1287, 1674, 1683, 1947, 2316
Tru9I	TTAA	6 cut(s)	1200, 1287, 1674, 1683, 1947, 2316
TscAI	CASTG	6 cut(s)	50, 417, 1117, 1558, 2127, 2289
TseFI	GTSAC	2 cut(s)	352, 746
TseI	GCWGC	9 cut(s)	76, 79, 710, 776, 815, 986, 1428, 1548, 1922
Tsp45I	GTSAC	2 cut(s)	352, 746
TspDTI	ATGAA	5 cut(s)	1361, 1658, 1879, 2213, 2231
TspGWI	ACGGA	3 cut(s)	54, 341, 1205
TspRI	CASTG	6 cut(s)	50, 417, 1117, 1558, 2127, 2289
Vha464I	CTTAAG	1 cut(s)	1682
VpaK11BI	GGWCC	1 cut(s)	458
XapI	RAATTY	5 cut(s)	235, 251, 834, 1873, 2502
XbaI	TCTAGA	1 cut(s)	1241
XceI	RCATGY	3 cut(s)	56, 124, 1361
XmnI	GAANNNNTTC	1 cut(s)	1280
XspI	CTAG	4 cut(s)	479, 1242, 1817, 2133
ZraI	GACGTC	1 cut(s)	142

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.