Rw0G012710

Mitochondrial protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00565
OG0003077
Physical Location & Seq
Forward (+)
8231 .. 9409
1179 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G012710.1

Sequence Viewer

Length: 1029 bp
ATGGAACCAACTTGTTATACTCAGGCTTCCAAAGATTCGAATTGGAGAGCTGCCATGACCGAGGAGATTAACGCTTTGTTGAAAAACCATACCTGGTCGCTTGTTCATCCCTCACCATCTCAGCATGTTGTGGGCTGCAAATGGGTGTTTCGCATTAAGCGAAACCCTGATGGCTCACTGGACGTCAAAAATGCCTTCCTACATGGCTATCTACAAGAGGACGTTTACATGACCCAGCCCCCTGGCTTCGTCGATTCCTCTCGGCCCTCCTATGTCTGTAAGCTTCACAAGGCACTTTATGGCCTCAAACAAGCACCCCGTGCTTGGTTTAAACTCATGAGTTCTTTTATGCTTTCTGTTGGTTTTCACCATAGTAAAGCTGATTCATCCTTATTCATCTATCAACATGGCCTGCATGTGATTTTCTTCTTACTCTATGTTGATGATATTGTTGTCACGGGCAGCAGTGACCGGCTTCTTCAGAGTTTTATCGATGCCTTGGGCCGTGGATTTAACATTAAGGATCTTGGTCCCCTACACTATTTCCTTGGTTTACAGGTCACACCTAATTCCAATGGCCTCCACATCAATCAACTCAAGTATGCTCATGACATTTTAGAGAAGCATGATCTGTTACACAGTCAACCAGTGAGCACCCCAATGTCAGCTAAGACTGTTCTCACCACACATGATGGGGACCTTCTTGCCAATCCCACTGTTTTTCGCGAGATGGTTGGCTCACTGCAGTATCTCACTATTACACGTCCTGACATTGCCTTTGCTGTCAATTCTGTGTCCCAATTTATGAGTCATCCTCGTGCTCCCCATCTCATTGCTGCCAAACATATTCTCCGCTATGTCAAAGGCACTCTGGGCCATGGTCTCTCTTTCAGTCCTCAGCGCCATCCTGTCCACCTATCTGCTTACTCTGATGCCGATTGGGCCGGTTGTCCTGAATCTCGCCGTTCCACTTCCGGCTATCTCATTTACCTTGGCACTACACTTGTCTCTTGGTGTTCCAAAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_2 gag_pre-integrs

Protein Analysis

342

Amino Acids

38.4

Weight (kDa)

9.06

Isoelectric Point (pI)

41.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_2 PF07727 60 - 222 1e-41 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 186
AccII CGCG 1 cut(s) 726
AciI CCGC 1 cut(s) 853
AclWI GGATC 1 cut(s) 531
AcuI CTGAAG 1 cut(s) 464
AcyI GRCGYC 1 cut(s) 183
AdeI CACNNNGTG 1 cut(s) 320
AfiI CCNNNNNNNGG 1 cut(s) 324
AflIII ACRYGT 1 cut(s) 761
AgsI TTSAA 1 cut(s) 82
AjiI CACGTC 1 cut(s) 764
AjnI CCWGG 2 cut(s) 92, 241
AluBI AGCT 4 cut(s) 50, 283, 380, 668
AluI AGCT 4 cut(s) 50, 283, 380, 668
Alw21I GWGCWC 2 cut(s) 656, 823
Alw26I GTCTC 2 cut(s) 887, 1012
AlwI GGATC 1 cut(s) 531
AoxI GGCC 7 cut(s) 263, 301, 409, 502, 577, 874, 942
ApeKI GCWGC 4 cut(s) 50, 135, 462, 836
ArsI GACNNNNNNTTYG 2 cut(s) 761, 793
AspLEI GCGC 1 cut(s) 903
AspS9I GGNCC 6 cut(s) 264, 502, 530, 697, 874, 942
AsuHPI GGTGA 3 cut(s) 105, 359, 673
AsuII TTCGAA 1 cut(s) 38
AvaII GGWCC 2 cut(s) 530, 697
BaeI ACNNNNGTAYC 2 cut(s) 731, 764
BauI CACGAG 1 cut(s) 816
Bbv12I GWGCWC 2 cut(s) 656, 823
BbvCI CCTCAGC 1 cut(s) 897
BbvI GCAGC 4 cut(s) 37, 122, 474, 823
BccI CCATC 6 cut(s) 124, 164, 686, 724, 834, 912
BceAI ACGGC 2 cut(s) 489, 948
BciT130I CCWGG 2 cut(s) 94, 243
BcoDI GTCTC 2 cut(s) 887, 1012
BfmI CTRYAG 1 cut(s) 743
BfoI RGCGCY 1 cut(s) 904
BglI GCCNNNNNGGC 1 cut(s) 941
BisI GCNGC 4 cut(s) 51, 136, 463, 837
BlsI GCNGC 4 cut(s) 52, 137, 464, 838
Bme1390I CCNGG 2 cut(s) 94, 243
Bme18I GGWCC 2 cut(s) 530, 697
BmgBI CACGTC 1 cut(s) 764
BmgT120I GGNCC 6 cut(s) 264, 502, 530, 697, 874, 942
BmiI GGNNCC 3 cut(s) 6, 532, 698
BmrFI CCNGG 2 cut(s) 94, 243
BmsI GCATC 2 cut(s) 484, 922
BplI GAGNNNNNCTC 2 cut(s) 799, 831
Bpu10I CCTNAGC 1 cut(s) 897
Bpu14I TTCGAA 1 cut(s) 38
BpuEI CTTGAG 1 cut(s) 581
Bsa29I ATCGAT 1 cut(s) 492
BsaHI GRCGYC 1 cut(s) 183
BsaI GGTCTC 1 cut(s) 887
BsaJI CCNNGG 7 cut(s) 60, 241, 498, 505, 547, 877, 991
BsaXI ACNNNNNCTCC 2 cut(s) 834, 864
Bsc4I CCNNNNNNNGG 1 cut(s) 324
Bse118I RCCGGY 2 cut(s) 471, 944
Bse1I ACTGG 2 cut(s) 183, 647
Bse3DI GCAATG 2 cut(s) 771, 831
BseBI CCWGG 2 cut(s) 94, 243
BseCI ATCGAT 1 cut(s) 492
BseDI CCNNGG 7 cut(s) 60, 241, 498, 505, 547, 877, 991
BseGI GGATG 4 cut(s) 106, 386, 811, 904
BseLI CCNNNNNNNGG 1 cut(s) 324
BseMI GCAATG 2 cut(s) 771, 831
BseMII CTCAG 3 cut(s) 35, 134, 911
BseNI ACTGG 2 cut(s) 183, 647
BseRI GAGGAG 1 cut(s) 77
BseXI GCAGC 4 cut(s) 37, 122, 474, 823
BseYI CCCAGC 1 cut(s) 234
Bsh1236I CGCG 1 cut(s) 726
BshFI GGCC 7 cut(s) 265, 303, 411, 504, 579, 876, 944
BshVI ATCGAT 1 cut(s) 492
BsiHKAI GWGCWC 2 cut(s) 656, 823
BsiSI CCGG 3 cut(s) 472, 945, 975
BslFI GGGAC 3 cut(s) 516, 710, 781
BslI CCNNNNNNNGG 1 cut(s) 324
BsmAI GTCTC 2 cut(s) 887, 1012
BsmFI GGGAC 3 cut(s) 516, 710, 781
BsnI GGCC 7 cut(s) 265, 303, 411, 504, 579, 876, 944
Bso31I GGTCTC 1 cut(s) 887
Bsp119I TTCGAA 1 cut(s) 38
Bsp1286I GDGCHC 2 cut(s) 656, 823
Bsp143I GATC 2 cut(s) 523, 628
Bsp19I CCATGG 1 cut(s) 877
Bsp68I TCGCGA 1 cut(s) 726
BspACI CCGC 1 cut(s) 853
BspANI GGCC 7 cut(s) 265, 303, 411, 504, 579, 876, 944
BspCNI CTCAG 3 cut(s) 34, 133, 910
BspDI ATCGAT 1 cut(s) 492
BspFNI CGCG 1 cut(s) 726
BspHI TCATGA 2 cut(s) 336, 607
BspLI GGNNCC 3 cut(s) 6, 532, 698
BspMAI CTGCAG 1 cut(s) 747
BspPI GGATC 1 cut(s) 531
BspT104I TTCGAA 1 cut(s) 38
BspTNI GGTCTC 1 cut(s) 887
BsrDI GCAATG 2 cut(s) 771, 831
BsrFI RCCGGY 2 cut(s) 471, 944
BsrI ACTGG 2 cut(s) 183, 647
BssAI RCCGGY 2 cut(s) 471, 944
BssECI CCNNGG 7 cut(s) 60, 241, 498, 505, 547, 877, 991
BssMI GATC 2 cut(s) 523, 628
BssNI GRCGYC 1 cut(s) 183
BssSI CACGAG 1 cut(s) 816
BssT1I CCWWGG 4 cut(s) 498, 547, 877, 991
Bst2BI CACGAG 1 cut(s) 816
Bst2UI CCWGG 2 cut(s) 94, 243
Bst4CI ACNGT 3 cut(s) 641, 676, 718
BstACI GRCGYC 1 cut(s) 183
BstAPI GCANNNNNTGC 1 cut(s) 320
BstBI TTCGAA 1 cut(s) 38
BstC8I GCNNGC 1 cut(s) 413
BstDEI CTNAG 4 cut(s) 21, 120, 669, 897
BstDSI CCRYGG 2 cut(s) 505, 877
BstF5I GGATG 4 cut(s) 106, 386, 811, 904
BstFNI CGCG 1 cut(s) 726
BstH2I RGCGCY 1 cut(s) 904
BstHHI GCGC 1 cut(s) 903
BstKTI GATC 2 cut(s) 526, 631
BstMAI GTCTC 2 cut(s) 887, 1012
BstMBI GATC 2 cut(s) 523, 628
BstMWI GCNNNNNNNGC 3 cut(s) 320, 873, 941
BstNI CCWGG 2 cut(s) 94, 243
BstNSI RCATGY 2 cut(s) 128, 419
BstSCI CCNGG 2 cut(s) 92, 241
BstSFI CTRYAG 1 cut(s) 743
BstUI CGCG 1 cut(s) 726
BstV1I GCAGC 4 cut(s) 37, 122, 474, 823
BstX2I RGATCY 1 cut(s) 523
BstXI CCANNNNNNTGG 1 cut(s) 242
BstYI RGATCY 1 cut(s) 523
Bsu15I ATCGAT 1 cut(s) 492
BsuRI GGCC 7 cut(s) 265, 303, 411, 504, 579, 876, 944
BsuTUI ATCGAT 1 cut(s) 492
BtgI CCRYGG 2 cut(s) 505, 877
BtrI CACGTC 1 cut(s) 764
BtsCI GGATG 4 cut(s) 106, 386, 811, 904
BtsI GCAGTG 2 cut(s) 472, 740
BtsIMutI CAGTG 5 cut(s) 176, 472, 654, 714, 740
BtuMI TCGCGA 1 cut(s) 726
Cac8I GCNNGC 1 cut(s) 413
CciI TCATGA 2 cut(s) 336, 607
CfoI GCGC 1 cut(s) 903
Cfr10I RCCGGY 2 cut(s) 471, 944
Cfr13I GGNCC 6 cut(s) 264, 502, 530, 697, 874, 942
ClaI ATCGAT 1 cut(s) 492
CsiI ACCWGGT 1 cut(s) 92
DdeI CTNAG 4 cut(s) 21, 120, 669, 897
DpnI GATC 2 cut(s) 525, 630
DpnII GATC 2 cut(s) 523, 628
DraI TTTAAA 1 cut(s) 331
DraIII CACNNNGTG 1 cut(s) 320
Eco130I CCWWGG 4 cut(s) 498, 547, 877, 991
Eco31I GGTCTC 1 cut(s) 887
Eco47I GGWCC 2 cut(s) 530, 697
Eco57I CTGAAG 1 cut(s) 464
EcoO109I RGGNCCY 1 cut(s) 697
EcoRII CCWGG 2 cut(s) 92, 241
EcoT14I CCWWGG 4 cut(s) 498, 547, 877, 991
ErhI CCWWGG 4 cut(s) 498, 547, 877, 991
FaqI GGGAC 3 cut(s) 516, 710, 781
Fnu4HI GCNGC 4 cut(s) 51, 136, 463, 837
FokI GGATG 4 cut(s) 93, 373, 798, 891
Fsp4HI GCNGC 4 cut(s) 51, 136, 463, 837
GlaI GCGC 1 cut(s) 902
GluI GCNGC 4 cut(s) 51, 136, 463, 837
GsaI CCCAGC 1 cut(s) 238
HaeII RGCGCY 1 cut(s) 904
HaeIII GGCC 7 cut(s) 265, 303, 411, 504, 579, 876, 944
HapII CCGG 3 cut(s) 472, 945, 975
HhaI GCGC 1 cut(s) 903
Hin1I GRCGYC 1 cut(s) 183
Hin6I GCGC 1 cut(s) 901
HinP1I GCGC 1 cut(s) 901
HincII GTYRAC 1 cut(s) 644
HindII GTYRAC 1 cut(s) 644
HindIII AAGCTT 1 cut(s) 281
HinfI GANTC 5 cut(s) 35, 254, 383, 808, 956
HpaII CCGG 3 cut(s) 472, 945, 975
HphI GGTGA 3 cut(s) 105, 359, 673
Hpy166II GTNNAC 4 cut(s) 226, 554, 644, 913
Hpy188I TCNGA 2 cut(s) 483, 931
Hpy188III TCNNGA 5 cut(s) 337, 608, 725, 767, 953
Hpy8I GTNNAC 4 cut(s) 226, 554, 644, 913
Hpy99I CGWCG 1 cut(s) 254
HpyAV CCTTC 2 cut(s) 205, 710
HpyCH4III ACNGT 3 cut(s) 641, 676, 718
HpyCH4IV ACGT 3 cut(s) 183, 222, 763
HpyCH4V TGCA 3 cut(s) 138, 415, 745
HpyF10VI GCNNNNNNNGC 3 cut(s) 320, 873, 941
HpyF3I CTNAG 4 cut(s) 21, 120, 669, 897
HpySE526I ACGT 3 cut(s) 183, 222, 763
Hsp92I GRCGYC 1 cut(s) 183
HspAI GCGC 1 cut(s) 901
Kzo9I GATC 2 cut(s) 523, 628
LmnI GCTCC 1 cut(s) 826
Lsp1109I GCAGC 4 cut(s) 37, 122, 474, 823
LweI GCATC 2 cut(s) 484, 922
MabI ACCWGGT 1 cut(s) 92
MaeII ACGT 3 cut(s) 183, 222, 763
MaeIII GTNAC 4 cut(s) 454, 467, 559, 633
MalI GATC 2 cut(s) 525, 630
MboI GATC 2 cut(s) 523, 628
MboII GAAGA 2 cut(s) 418, 470
MflI RGATCY 1 cut(s) 523
MhlI GDGCHC 2 cut(s) 656, 823
MluCI AATT 4 cut(s) 40, 568, 787, 800
MlyI GAGTC 1 cut(s) 817
MnlI CCTC 9 cut(s) 55, 121, 211, 268, 277, 314, 590, 825, 906
MseI TTAA 5 cut(s) 69, 156, 330, 513, 519
MslI CAYNNNNRTG 2 cut(s) 659, 816
MspI CCGG 3 cut(s) 472, 945, 975
MspR9I CCNGG 2 cut(s) 94, 243
MssI GTTTAAAC 1 cut(s) 331
MvaI CCWGG 2 cut(s) 94, 243
MvnI CGCG 1 cut(s) 726
MwoI GCNNNNNNNGC 3 cut(s) 320, 873, 941
NcoI CCATGG 1 cut(s) 877
NdeII GATC 2 cut(s) 523, 628
NlaIV GGNNCC 3 cut(s) 6, 532, 698
NmeAIII GCCGAG 1 cut(s) 241
NmuCI GTSAC 3 cut(s) 454, 467, 559
NruI TCGCGA 1 cut(s) 726
NspI RCATGY 2 cut(s) 128, 419
NspV TTCGAA 1 cut(s) 38
PagI TCATGA 2 cut(s) 336, 607
PcsI WCGNNNNNNNCGW 1 cut(s) 157
PfeI GAWTC 4 cut(s) 35, 254, 383, 956
PkrI GCNGC 4 cut(s) 52, 137, 464, 838
PleI GAGTC 1 cut(s) 816
PmeI GTTTAAAC 1 cut(s) 331
PpsI GAGTC 1 cut(s) 816
PpuMI RGGWCCY 1 cut(s) 697
Psp5II RGGWCCY 1 cut(s) 697
Psp6I CCWGG 2 cut(s) 92, 241
PspFI CCCAGC 1 cut(s) 234
PspGI CCWGG 2 cut(s) 92, 241
PspN4I GGNNCC 3 cut(s) 6, 532, 698
PspPI GGNCC 6 cut(s) 264, 502, 530, 697, 874, 942
PspPPI RGGWCCY 1 cut(s) 697
PstI CTGCAG 1 cut(s) 747
PsuI RGATCY 1 cut(s) 523
RruI TCGCGA 1 cut(s) 726
RseI CAYNNNNRTG 2 cut(s) 659, 816
SaqAI TTAA 5 cut(s) 69, 156, 330, 513, 519
SatI GCNGC 4 cut(s) 51, 136, 463, 837
Sau3AI GATC 2 cut(s) 523, 628
Sau96I GGNCC 6 cut(s) 264, 502, 530, 697, 874, 942
SchI GAGTC 1 cut(s) 817
ScrFI CCNGG 2 cut(s) 94, 243
SduI GDGCHC 2 cut(s) 656, 823
SexAI ACCWGGT 1 cut(s) 92
SfaNI GCATC 2 cut(s) 484, 922
SfcI CTRYAG 1 cut(s) 743
SfuI TTCGAA 1 cut(s) 38
SinI GGWCC 2 cut(s) 530, 697
SmiMI CAYNNNNRTG 2 cut(s) 659, 816
SmlI CTYRAG 1 cut(s) 596
SmoI CTYRAG 1 cut(s) 596
Sse9I AATT 4 cut(s) 40, 568, 787, 800
SsiI CCGC 1 cut(s) 853
StyD4I CCNGG 2 cut(s) 92, 241
StyI CCWWGG 4 cut(s) 498, 547, 877, 991
TaaI ACNGT 3 cut(s) 641, 676, 718
TaiI ACGT 3 cut(s) 186, 225, 766
TaqI TCGA 3 cut(s) 38, 252, 492
TaqII GACCGA 1 cut(s) 74
TasI AATT 4 cut(s) 40, 568, 787, 800
TfiI GAWTC 4 cut(s) 35, 254, 383, 956
Tru1I TTAA 5 cut(s) 69, 156, 330, 513, 519
Tru9I TTAA 5 cut(s) 69, 156, 330, 513, 519
TscAI CASTG 5 cut(s) 183, 472, 654, 721, 747
TseFI GTSAC 3 cut(s) 454, 467, 559
TseI GCWGC 4 cut(s) 50, 135, 462, 836
Tsp45I GTSAC 3 cut(s) 454, 467, 559
TspDTI ATGAA 3 cut(s) 95, 375, 385
TspRI CASTG 5 cut(s) 183, 472, 654, 721, 747
VpaK11BI GGWCC 2 cut(s) 530, 697
XceI RCATGY 2 cut(s) 128, 419
ZraI GACGTC 1 cut(s) 184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.