Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003077

Physical Location & Seq

Genomic Coordinates Forward (+)

16591237 .. 16592086

Gene Structure 850 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ23476

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGTCGGCAAAGGCTGTCCTCACCACACATGATGGTGATCTTCTTGAAAATCCAACTGCCTTTCGTGAGATGGTTGGCTCCTTGCAGTACCTAACCATTACACGCCCTGACATCGCCTTTGCGGTCAATTCTGTGTCACAATTCATGAGTCAACCTCGTGCTCCACATCTCATTGCAGCCAAACGTATTCTCCGCTATGTCAAAGGCACACTAGGCCATGGTCTTCATTTTAGTCCTCAACGCCAACTTGCCCACCTTTCTGCTTACTCTGATGCCGATTGGACCGGCTACCCAGAATCTCGCCGTTCCACTTCCGGCTATCTCATTTACCTTGGCAATACCCTTGTCTCTTGGTGTTCCAAAAAGCAACCTACCATTGCTCGCTCCAGTGCAGAATCTGAATATCGATCCCTTGCTCATTCCAGTGCCGAGACAACTTGGTTAGGCTTCTTACTATATGAACTTGGTGTCCATATTCAATACCTCATTCTGCTTTACTGTGATAACCTAAGTGCCACATACATGGCTTCTAATCCTGTCTTTCACGCTCGCACCAAGCACATCGAGTTAGATTATCACTTTGTTCGTGAAAAGGTAGCACTTGAGAGTCATCAGGTTCATTTTGTCCCTTCCGTCGATCAACCAGCTGATCTTCTTACTAAACCACTTCACAAGCAGCGGCATAATCTCCTGTGTACCAAACTTGTACGTCCTGAGCTGCCCAGTTTGAAGGGGGGTGTTAGAGCAAATCACTCTCCTACATTGATTTCCTCCCTCTCCACAATCAAAACTGATTGTGTAACTGTAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_2 Retrotran_gag_2 gag_pre-integrs

Protein Analysis

270

Amino Acids

30.24

Weight (kDa)

8.97

Isoelectric Point (pI)

48.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003077)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATMG00810
fragaria_vesca	FvH4_3g08011 FvH4_5g11221 FvH4_6g11491 FvH4_6g53931 FvH4_6g53931 FvH4_6g53931 FvH4_6g53931
rosa_chinensis	RchiOBHm_Chr1g0347991 RchiOBHm_Chr1g0348001 RchiOBHm_Chr1g0350631 RchiOBHm_Chr2g0100361 RchiOBHm_Chr2g0102931 RchiOBHm_Chr2g0122981 RchiOBHm_Chr2g0124571 RchiOBHm_Chr2g0134981 RchiOBHm_Chr4g0410941 RchiOBHm_Chr4g0410951 RchiOBHm_Chr5g0026511 RchiOBHm_Chr5g0078261 RchiOBHm_Chr5g0082731 RchiOBHm_Chr6g0261771 RchiOBHm_Chr6g0261781 RchiOBHm_Chr6g0276521 RchiOBHm_Chr6g0310171 RchiOBHm_Chr7g0180521 RchiOBHm_Chr7g0182281 RchiOBHm_Chr7g0231781 RchiOBHm_Chr7g0231971
rosa_roxburghii	Rroxscaffold_3G00242950
rosa_wichuraiana	Rw0G003700 Rw0G012710 Rw4G014500 Rw4G035380 Rw5G003190 Rw5G018810 Rw7G035270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	122, 193, 679
AclWI	GGATC	1 cut(s)	402
AfaI	GTAC	3 cut(s)	89, 697, 708
AgsI	TTSAA	3 cut(s)	47, 479, 730
AloI	GAACNNNNNNTCC	2 cut(s)	453, 485
AluBI	AGCT	2 cut(s)	647, 718
AluI	AGCT	2 cut(s)	647, 718
Alw21I	GWGCWC	1 cut(s)	163
Alw26I	GTCTC	2 cut(s)	352, 425
AlwI	GGATC	1 cut(s)	402
AlwNI	CAGNNNCTG	1 cut(s)	398
AoxI	GGCC	1 cut(s)	214
ApeKI	GCWGC	3 cut(s)	176, 676, 718
ArsI	GACNNNNNNTTYG	2 cut(s)	101, 133
AspS9I	GGNCC	1 cut(s)	282
AsuHPI	GGTGA	2 cut(s)	13, 47
AvaII	GGWCC	1 cut(s)	282
BauI	CACGAG	1 cut(s)	156
BbsI	GAAGAC	1 cut(s)	215
Bbv12I	GWGCWC	1 cut(s)	163
BbvI	GCAGC	3 cut(s)	188, 688, 705
BccI	CCATC	2 cut(s)	26, 64
BceAI	ACGGC	1 cut(s)	288
BcoDI	GTCTC	2 cut(s)	352, 425
BfaI	CTAG	1 cut(s)	212
BfmI	CTRYAG	1 cut(s)	804
BisI	GCNGC	4 cut(s)	177, 677, 680, 719
BlsI	GCNGC	4 cut(s)	178, 678, 681, 720
Bme18I	GGWCC	1 cut(s)	282
BmgT120I	GGNCC	1 cut(s)	282
BmiI	GGNNCC	1 cut(s)	79
BmrI	ACTGGG	1 cut(s)	717
BmsI	GCATC	1 cut(s)	262
BmuI	ACTGGG	1 cut(s)	717
BpiI	GAAGAC	1 cut(s)	215
BplI	GAGNNNNNCTC	2 cut(s)	139, 171
BpmI	CTGGAG	1 cut(s)	370
Bpu10I	CCTNAGC	1 cut(s)	714
BpuEI	CTTGAG	1 cut(s)	623
Bsa29I	ATCGAT	1 cut(s)	406
BsaBI	GATNNNNATC	1 cut(s)	36
BsaJI	CCNNGG	2 cut(s)	217, 331
BsaXI	ACNNNNNCTCC	2 cut(s)	174, 204
Bse118I	RCCGGY	1 cut(s)	284
Bse1I	ACTGG	3 cut(s)	387, 423, 723
Bse3DI	GCAATG	2 cut(s)	171, 375
Bse8I	GATNNNNATC	1 cut(s)	36
BseCI	ATCGAT	1 cut(s)	406
BseDI	CCNNGG	2 cut(s)	217, 331
BseJI	GATNNNNATC	1 cut(s)	36
BseMI	GCAATG	2 cut(s)	171, 375
BseMII	CTCAG	1 cut(s)	705
BseNI	ACTGG	3 cut(s)	387, 423, 723
BseXI	GCAGC	3 cut(s)	188, 688, 705
BsgI	GTGCAG	1 cut(s)	411
BshFI	GGCC	1 cut(s)	216
BshVI	ATCGAT	1 cut(s)	406
BsiHKAI	GWGCWC	1 cut(s)	163
BsiSI	CCGG	2 cut(s)	285, 315
BslFI	GGGAC	1 cut(s)	611
BsmAI	GTCTC	2 cut(s)	352, 425
BsmFI	GGGAC	1 cut(s)	611
BsnI	GGCC	1 cut(s)	216
Bsp1286I	GDGCHC	1 cut(s)	163
Bsp143I	GATC	4 cut(s)	37, 407, 637, 649
Bsp19I	CCATGG	1 cut(s)	217
BspACI	CCGC	3 cut(s)	122, 193, 679
BspANI	GGCC	1 cut(s)	216
BspCNI	CTCAG	1 cut(s)	706
BspDI	ATCGAT	1 cut(s)	406
BspHI	TCATGA	1 cut(s)	144
BspLI	GGNNCC	1 cut(s)	79
BspPI	GGATC	1 cut(s)	402
BsrDI	GCAATG	2 cut(s)	171, 375
BsrFI	RCCGGY	1 cut(s)	284
BsrI	ACTGG	3 cut(s)	387, 423, 723
BssAI	RCCGGY	1 cut(s)	284
BssECI	CCNNGG	2 cut(s)	217, 331
BssMI	GATC	4 cut(s)	37, 407, 637, 649
BssSI	CACGAG	1 cut(s)	156
BssT1I	CCWWGG	2 cut(s)	217, 331
Bst2BI	CACGAG	1 cut(s)	156
Bst4CI	ACNGT	2 cut(s)	500, 805
BstC8I	GCNNGC	2 cut(s)	382, 550
BstDEI	CTNAG	2 cut(s)	509, 714
BstDSI	CCRYGG	1 cut(s)	217
BstKTI	GATC	4 cut(s)	40, 410, 640, 652
BstMAI	GTCTC	2 cut(s)	352, 425
BstMBI	GATC	4 cut(s)	37, 407, 637, 649
BstMWI	GCNNNNNNNGC	1 cut(s)	213
BstSFI	CTRYAG	1 cut(s)	804
BstV1I	GCAGC	3 cut(s)	188, 688, 705
BstV2I	GAAGAC	1 cut(s)	215
BstXI	CCANNNNNNTGG	1 cut(s)	523
Bsu15I	ATCGAT	1 cut(s)	406
BsuRI	GGCC	1 cut(s)	216
BsuTUI	ATCGAT	1 cut(s)	406
BtgI	CCRYGG	1 cut(s)	217
BtgZI	GCGATG	1 cut(s)	97
BtsIMutI	CAGTG	2 cut(s)	394, 430
Cac8I	GCNNGC	2 cut(s)	382, 550
CaiI	CAGNNNCTG	1 cut(s)	398
CciI	TCATGA	1 cut(s)	144
Cfr10I	RCCGGY	1 cut(s)	284
Cfr13I	GGNCC	1 cut(s)	282
ClaI	ATCGAT	1 cut(s)	406
Csp6I	GTAC	3 cut(s)	88, 696, 707
CviAII	CATG	4 cut(s)	29, 145, 218, 523
CviQI	GTAC	3 cut(s)	88, 696, 707
DdeI	CTNAG	2 cut(s)	509, 714
DpnI	GATC	4 cut(s)	39, 409, 639, 651
DpnII	GATC	4 cut(s)	37, 407, 637, 649
Eco130I	CCWWGG	2 cut(s)	217, 331
Eco47I	GGWCC	1 cut(s)	282
EcoT14I	CCWWGG	2 cut(s)	217, 331
ErhI	CCWWGG	2 cut(s)	217, 331
FaeI	CATG	4 cut(s)	32, 148, 221, 526
FaqI	GGGAC	1 cut(s)	611
FatI	CATG	4 cut(s)	28, 144, 217, 522
Fnu4HI	GCNGC	4 cut(s)	177, 677, 680, 719
Fsp4HI	GCNGC	4 cut(s)	177, 677, 680, 719
FspBI	CTAG	1 cut(s)	212
GluI	GCNGC	4 cut(s)	177, 677, 680, 719
GsuI	CTGGAG	1 cut(s)	370
HaeIII	GGCC	1 cut(s)	216
HapII	CCGG	2 cut(s)	285, 315
Hin1II	CATG	4 cut(s)	32, 148, 221, 526
HincII	GTYRAC	1 cut(s)	152
HindII	GTYRAC	1 cut(s)	152
HinfI	GANTC	4 cut(s)	148, 296, 395, 607
HpaII	CCGG	2 cut(s)	285, 315
HphI	GGTGA	2 cut(s)	13, 47
Hpy166II	GTNNAC	2 cut(s)	152, 696
Hpy188I	TCNGA	2 cut(s)	271, 400
Hpy188III	TCNNGA	5 cut(s)	44, 65, 145, 587, 713
Hpy8I	GTNNAC	2 cut(s)	152, 696
Hpy99I	CGWCG	1 cut(s)	638
HpyAV	CCTTC	2 cut(s)	639, 724
HpyCH4III	ACNGT	2 cut(s)	500, 805
HpyCH4IV	ACGT	2 cut(s)	184, 709
HpyCH4V	TGCA	3 cut(s)	85, 176, 392
HpyF10VI	GCNNNNNNNGC	1 cut(s)	213
HpyF3I	CTNAG	2 cut(s)	509, 714
HpySE526I	ACGT	2 cut(s)	184, 709
Hsp92II	CATG	4 cut(s)	32, 148, 221, 526
Kzo9I	GATC	4 cut(s)	37, 407, 637, 649
LmnI	GCTCC	3 cut(s)	83, 166, 389
Lsp1109I	GCAGC	3 cut(s)	188, 688, 705
LweI	GCATC	1 cut(s)	262
MaeI	CTAG	1 cut(s)	212
MaeII	ACGT	2 cut(s)	184, 709
MaeIII	GTNAC	2 cut(s)	135, 799
MalI	GATC	4 cut(s)	39, 409, 639, 651
MboI	GATC	4 cut(s)	37, 407, 637, 649
MboII	GAAGA	3 cut(s)	32, 215, 644
MhlI	GDGCHC	1 cut(s)	163
MluCI	AATT	2 cut(s)	127, 140
MlyI	GAGTC	2 cut(s)	157, 616
MmeI	TCCRAC	1 cut(s)	77
MnlI	CCTC	6 cut(s)	29, 165, 246, 494, 781, 785
MslI	CAYNNNNRTG	3 cut(s)	33, 423, 521
MspA1I	CMGCKG	2 cut(s)	647, 679
MspI	CCGG	2 cut(s)	285, 315
MwoI	GCNNNNNNNGC	1 cut(s)	213
NcoI	CCATGG	1 cut(s)	217
NdeII	GATC	4 cut(s)	37, 407, 637, 649
NlaIII	CATG	4 cut(s)	32, 148, 221, 526
NlaIV	GGNNCC	1 cut(s)	79
NmeAIII	GCCGAG	1 cut(s)	454
NmuCI	GTSAC	1 cut(s)	135
PagI	TCATGA	1 cut(s)	144
PfeI	GAWTC	2 cut(s)	296, 395
PkrI	GCNGC	4 cut(s)	178, 678, 681, 720
PleI	GAGTC	2 cut(s)	156, 615
PpsI	GAGTC	2 cut(s)	156, 615
PspN4I	GGNNCC	1 cut(s)	79
PspPI	GGNCC	1 cut(s)	282
PstNI	CAGNNNCTG	1 cut(s)	398
PvuII	CAGCTG	1 cut(s)	647
RsaI	GTAC	3 cut(s)	89, 697, 708
RsaNI	GTAC	3 cut(s)	88, 696, 707
RseI	CAYNNNNRTG	3 cut(s)	33, 423, 521
SatI	GCNGC	4 cut(s)	177, 677, 680, 719
Sau3AI	GATC	4 cut(s)	37, 407, 637, 649
Sau96I	GGNCC	1 cut(s)	282
SchI	GAGTC	2 cut(s)	157, 616
SduI	GDGCHC	1 cut(s)	163
SfaNI	GCATC	1 cut(s)	262
SfcI	CTRYAG	1 cut(s)	804
SinI	GGWCC	1 cut(s)	282
SmiMI	CAYNNNNRTG	3 cut(s)	33, 423, 521
SmlI	CTYRAG	1 cut(s)	602
SmoI	CTYRAG	1 cut(s)	602
Sse9I	AATT	2 cut(s)	127, 140
SsiI	CCGC	3 cut(s)	122, 193, 679
SspMI	CTAG	1 cut(s)	212
StyI	CCWWGG	2 cut(s)	217, 331
TaaI	ACNGT	2 cut(s)	500, 805
TaiI	ACGT	2 cut(s)	187, 712
TaqI	TCGA	3 cut(s)	406, 564, 636
TasI	AATT	2 cut(s)	127, 140
TauI	GCSGC	1 cut(s)	682
TfiI	GAWTC	2 cut(s)	296, 395
TscAI	CASTG	2 cut(s)	394, 430
TseFI	GTSAC	1 cut(s)	135
TseI	GCWGC	3 cut(s)	176, 676, 718
Tsp45I	GTSAC	1 cut(s)	135
TspDTI	ATGAA	4 cut(s)	133, 215, 474, 608
TspGWI	ACGGA	1 cut(s)	622
TspRI	CASTG	2 cut(s)	394, 430
VpaK11BI	GGWCC	1 cut(s)	282
XspI	CTAG	1 cut(s)	212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.