Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003077

Physical Location & Seq

Genomic Coordinates Forward (+)

55516704 .. 55516964

Gene Structure 261 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20773

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

ATGACCTCTTTCTTATTGTCGGTTGGCTTTGTTCAAAGTCTGGCAGATTCTTCCCTTTTTATTTTTCGTCATGGAGTGCACACTATTTATTTTTTGCTGTATGTTGATGACATTGTGGTCACGAGTAGTGACACTCAGCTTCTCCAACGGTTTATTGATGCATTGGGTCATGGTTTTGATATTAAGGACCTTGGTCCCCTGCACTATTTCCTTGGTTTACAGGTATCCTCTCACAATGATGGGATTCATATTGGCCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_2 Retrotran_gag_2 rve

Protein Analysis

86

Amino Acids

9.6

Weight (kDa)

5.43

Isoelectric Point (pI)

34.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_2	PF07727	2 - 85	2.3e-13	Reverse transcriptase (RNA-dependent DNA polymerase)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003077)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATMG00810
fragaria_vesca	FvH4_3g08011 FvH4_5g11221 FvH4_6g11491 FvH4_6g53931 FvH4_6g53931 FvH4_6g53931 FvH4_6g53931
rosa_chinensis	RchiOBHm_Chr1g0347991 RchiOBHm_Chr1g0348001 RchiOBHm_Chr1g0350631 RchiOBHm_Chr2g0100361 RchiOBHm_Chr2g0102931 RchiOBHm_Chr2g0122981 RchiOBHm_Chr2g0124571 RchiOBHm_Chr2g0134981 RchiOBHm_Chr4g0410941 RchiOBHm_Chr4g0410951 RchiOBHm_Chr5g0026511 RchiOBHm_Chr5g0078261 RchiOBHm_Chr5g0082731 RchiOBHm_Chr6g0261771 RchiOBHm_Chr6g0261781 RchiOBHm_Chr6g0276521 RchiOBHm_Chr6g0310171 RchiOBHm_Chr7g0180521 RchiOBHm_Chr7g0182281 RchiOBHm_Chr7g0231781 RchiOBHm_Chr7g0231971
rosa_roxburghii	Rroxscaffold_3G00242950
rosa_wichuraiana	Rw0G003700 Rw0G012710 Rw4G014500 Rw4G035380 Rw5G003190 Rw5G018810 Rw7G035270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	116
AcoI	YGGCCR	1 cut(s)	253
AgsI	TTSAA	1 cut(s)	35
AluBI	AGCT	1 cut(s)	139
AluI	AGCT	1 cut(s)	139
Alw21I	GWGCWC	1 cut(s)	81
Alw44I	GTGCAC	1 cut(s)	77
AoxI	GGCC	1 cut(s)	253
ApaLI	GTGCAC	1 cut(s)	77
AspS9I	GGNCC	2 cut(s)	187, 194
AvaII	GGWCC	2 cut(s)	187, 194
BaeGI	GKGCMC	1 cut(s)	81
BalI	TGGCCA	1 cut(s)	255
BauI	CACGAG	1 cut(s)	121
Bbv12I	GWGCWC	1 cut(s)	81
BccI	CCATC	1 cut(s)	233
BciVI	GTATCC	1 cut(s)	235
BfuI	GTATCC	1 cut(s)	235
Bme18I	GGWCC	2 cut(s)	187, 194
BmgT120I	GGNCC	2 cut(s)	187, 194
BmiI	GGNNCC	1 cut(s)	196
BmsI	GCATC	1 cut(s)	148
BoxI	GACNNNNGTC	1 cut(s)	192
BsaJI	CCNNGG	2 cut(s)	190, 211
BseDI	CCNNGG	2 cut(s)	190, 211
BseMII	CTCAG	1 cut(s)	149
BseSI	GKGCMC	1 cut(s)	81
BsgI	GTGCAG	1 cut(s)	185
BshFI	GGCC	1 cut(s)	255
BsiHKAI	GWGCWC	1 cut(s)	81
BslFI	GGGAC	1 cut(s)	180
BsmFI	GGGAC	1 cut(s)	180
BsnI	GGCC	1 cut(s)	255
Bsp1286I	GDGCHC	1 cut(s)	81
BspANI	GGCC	1 cut(s)	255
BspCNI	CTCAG	1 cut(s)	148
BspLI	GGNNCC	1 cut(s)	196
BssECI	CCNNGG	2 cut(s)	190, 211
BssSI	CACGAG	1 cut(s)	121
BssT1I	CCWWGG	2 cut(s)	190, 211
Bst2BI	CACGAG	1 cut(s)	121
Bst4CI	ACNGT	1 cut(s)	150
BstDEI	CTNAG	1 cut(s)	135
BstPAI	GACNNNNGTC	1 cut(s)	192
BstSLI	GKGCMC	1 cut(s)	81
BsuI	GTATCC	1 cut(s)	235
BsuRI	GGCC	1 cut(s)	255
Cfr13I	GGNCC	2 cut(s)	187, 194
CviAII	CATG	2 cut(s)	71, 170
CviJI	RGCY	3 cut(s)	27, 139, 255
CviKI_1	RGCY	3 cut(s)	27, 139, 255
DdeI	CTNAG	1 cut(s)	135
DrdI	GACNNNNNNGTC	1 cut(s)	116
DseDI	GACNNNNNNGTC	1 cut(s)	116
EaeI	YGGCCR	1 cut(s)	253
Eco130I	CCWWGG	2 cut(s)	190, 211
Eco47I	GGWCC	2 cut(s)	187, 194
EcoO109I	RGGNCCY	1 cut(s)	187
EcoT14I	CCWWGG	2 cut(s)	190, 211
EcoT22I	ATGCAT	1 cut(s)	163
ErhI	CCWWGG	2 cut(s)	190, 211
FaeI	CATG	2 cut(s)	74, 173
FaiI	YATR	4 cut(s)	72, 102, 171, 249
FaqI	GGGAC	1 cut(s)	180
FatI	CATG	2 cut(s)	70, 169
HaeIII	GGCC	1 cut(s)	255
Hin1II	CATG	2 cut(s)	74, 173
HinfI	GANTC	2 cut(s)	47, 244
Hpy166II	GTNNAC	2 cut(s)	79, 218
Hpy188III	TCNNGA	1 cut(s)	121
Hpy8I	GTNNAC	2 cut(s)	79, 218
HpyCH4III	ACNGT	1 cut(s)	150
HpyCH4V	TGCA	3 cut(s)	79, 161, 202
HpyF3I	CTNAG	1 cut(s)	135
Hsp92II	CATG	2 cut(s)	74, 173
LpnPI	CCDG	3 cut(s)	26, 206, 212
LweI	GCATC	1 cut(s)	148
MaeIII	GTNAC	2 cut(s)	118, 128
MboII	GAAGA	1 cut(s)	42
MhlI	GDGCHC	1 cut(s)	81
MlsI	TGGCCA	1 cut(s)	255
MluNI	TGGCCA	1 cut(s)	255
MmeI	TCCRAC	1 cut(s)	169
MnlI	CCTC	2 cut(s)	16, 238
Mox20I	TGGCCA	1 cut(s)	255
Mph1103I	ATGCAT	1 cut(s)	163
MscI	TGGCCA	1 cut(s)	255
MseI	TTAA	1 cut(s)	183
MslI	CAYNNNNRTG	1 cut(s)	237
Msp20I	TGGCCA	1 cut(s)	255
NlaIII	CATG	2 cut(s)	74, 173
NlaIV	GGNNCC	1 cut(s)	196
NmuCI	GTSAC	2 cut(s)	118, 128
NsiI	ATGCAT	1 cut(s)	163
PfeI	GAWTC	2 cut(s)	47, 244
PpuMI	RGGWCCY	1 cut(s)	187
PshAI	GACNNNNGTC	1 cut(s)	192
Psp5II	RGGWCCY	1 cut(s)	187
PspN4I	GGNNCC	1 cut(s)	196
PspPI	GGNCC	2 cut(s)	187, 194
PspPPI	RGGWCCY	1 cut(s)	187
RseI	CAYNNNNRTG	1 cut(s)	237
SaqAI	TTAA	1 cut(s)	183
Sau96I	GGNCC	2 cut(s)	187, 194
SduI	GDGCHC	1 cut(s)	81
SetI	ASST	4 cut(s)	8, 141, 192, 225
SfaNI	GCATC	1 cut(s)	148
SgeI	CNNG	9 cut(s)	53, 83, 133, 135, 182, 203, 211, 224, 233
SinI	GGWCC	2 cut(s)	187, 194
SmiMI	CAYNNNNRTG	1 cut(s)	237
StyI	CCWWGG	2 cut(s)	190, 211
TaaI	ACNGT	1 cut(s)	150
TfiI	GAWTC	2 cut(s)	47, 244
Tru1I	TTAA	1 cut(s)	183
Tru9I	TTAA	1 cut(s)	183
TseFI	GTSAC	2 cut(s)	118, 128
Tsp45I	GTSAC	2 cut(s)	118, 128
TspDTI	ATGAA	1 cut(s)	236
VneI	GTGCAC	1 cut(s)	77
VpaK11BI	GGWCC	2 cut(s)	187, 194
Zsp2I	ATGCAT	1 cut(s)	163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.