RchiOBHm_Chr2g0102931

oxidoreductase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0003077
Physical Location & Seq
Reverse (-)
14544895 .. 14546598
1704 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ47733

Sequence Viewer

Length: 1077 bp
ATGGTTGAAGAGATCAATGCTTTGCTGAAGAACAATACCTGGACTCTCGTTCCCCCAACTCCATCCCAGAACCTAGTTGGCTGTAAATGGGTGTTTCGTGTGAAGCTCAATCCAGATGGAACTGTTGAACGTCACAAAGCTAAGCTTGTGGCCAAAGGCTTTCATCAGCACCAAGGTATTGACTACGATGAAACTTTTAGTCCTATGATTAAACCTGCCACTATTCGTGTTGTGCTCTGCCTTGCTGTGTCTAGAGGCTGGTCCCTCCGTCAATTGGACGTTAAAAATGCATTTCTTCATGGCTTTCTTAAAGAAGATGTGTATATAACTCAACCACCAGGCTTCGTTGATCCTACTCAGCCGTCTCATGTTTGCAAACTTAACAAAGCACTCTACGGTCTCAAGCAAGCTCCGCGTGCGTGGTTTCACCGTATGACCTCCTTCTTGCTCTCAGTTGGGTTTCATACTATTTATTTCCTACTGTATGTTGATGATATTGTGGTCACCGGTAGTGATGATAGACTTCTACAGAGCTTTATTGATGCATTGGGACGTGGCTTTGACATCAAAGACCTTGGTACTCTACACTACTTTCTCGGTTTACAAGTTACATCTCAAAACCACGGCATTCATGTTAGTCAATTCAAATATGCTTATGATCTCCTTGTGAAACATGATATGTTTCTTAGTAAACCTATTAGCACACCGATGTCAGCCAAGACCATTCTCATTGCTCATGAAGGCGATCCCCTTCCCAATCCCTCGGCCTTCCGGGAAATTGTTGGCTCTTTACAGTATTTGACCATCACTAGACCTGACATTGCCTTTCTTGTCAATTCTATCTCCCAGTTCATGAGTCAACCACGCACCCCACATTTGGTTGCTGCCAAGCGCATCCTTCGCTACATCAAGGGCACCCTTGATCATGGCTTGTATTTCGGTCCTCAACGACAACCTGCTTCCCTCGCTGCCTATGCTGATGCTAATTGGGCTGGTTATCCAGATTCTCGTCGTTCTACTTCTGGCTACCTTGTATATCTTGGCACCAACTTGGTCTCTTGGTGTTCTAAAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

358

Amino Acids

40.33

Weight (kDa)

9.39

Isoelectric Point (pI)

31.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_2 PF07727 11 - 238 1.8e-58 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 223, 964
AccB1I GGYRCC 2 cut(s) 914, 1043
AccII CGCG 1 cut(s) 415
AciI CCGC 1 cut(s) 413
AclWI GGATC 2 cut(s) 344, 740
AcoI YGGCCR 1 cut(s) 150
AcuI CTGAAG 1 cut(s) 47
AfaI GTAC 1 cut(s) 580
AfiI CCNNNNNNNGG 2 cut(s) 274, 877
AgeI ACCGGT 1 cut(s) 506
AgsI TTSAA 3 cut(s) 8, 128, 646
AjiI CACGTC 1 cut(s) 554
AjnI CCWGG 2 cut(s) 38, 337
AluBI AGCT 5 cut(s) 106, 140, 145, 410, 534
AluI AGCT 5 cut(s) 106, 140, 145, 410, 534
Alw21I GWGCWC 1 cut(s) 237
Alw26I GTCTC 3 cut(s) 369, 404, 1060
AlwI GGATC 2 cut(s) 344, 740
AoxI GGCC 2 cut(s) 150, 765
ApeKI GCWGC 2 cut(s) 884, 968
AsiGI ACCGGT 1 cut(s) 506
AspLEI GCGC 1 cut(s) 894
AspS9I GGNCC 2 cut(s) 261, 941
AsuC2I CCSGG 1 cut(s) 773
AsuHPI GGTGA 2 cut(s) 419, 496
AvaII GGWCC 2 cut(s) 261, 941
BaeGI GKGCMC 1 cut(s) 917
BalI TGGCCA 1 cut(s) 152
BanI GGYRCC 2 cut(s) 914, 1043
Bbv12I GWGCWC 1 cut(s) 237
BbvI GCAGC 2 cut(s) 871, 955
BccI CCATC 3 cut(s) 70, 110, 812
BceAI ACGGC 2 cut(s) 346, 640
BciT130I CCWGG 2 cut(s) 40, 339
BclI TGATCA 1 cut(s) 922
BcnI CCSGG 1 cut(s) 773
BcoDI GTCTC 3 cut(s) 369, 404, 1060
BfaI CTAG 3 cut(s) 74, 252, 810
BfmI CTRYAG 1 cut(s) 527
BfuAI ACCTGC 2 cut(s) 223, 964
BisI GCNGC 2 cut(s) 885, 969
BlpI GCTNAGC 1 cut(s) 141
BlsI GCNGC 2 cut(s) 886, 970
Bme1390I CCNGG 3 cut(s) 40, 339, 773
Bme18I GGWCC 2 cut(s) 261, 941
BmgBI CACGTC 1 cut(s) 554
BmgT120I GGNCC 2 cut(s) 261, 941
BmiI GGNNCC 3 cut(s) 263, 916, 1045
BmrFI CCNGG 3 cut(s) 40, 339, 773
BmrI ACTGGG 1 cut(s) 841
BmsI GCATC 3 cut(s) 532, 903, 970
BmuI ACTGGG 1 cut(s) 841
Bpu1102I GCTNAGC 1 cut(s) 141
BpuEI CTTGAG 1 cut(s) 386
BpuMI CCSGG 1 cut(s) 773
BsaI GGTCTC 2 cut(s) 404, 1060
BsaJI CCNNGG 4 cut(s) 172, 574, 622, 762
BsaWI WCCGGW 1 cut(s) 506
Bsc4I CCNNNNNNNGG 2 cut(s) 274, 877
Bse118I RCCGGY 1 cut(s) 506
Bse1I ACTGG 1 cut(s) 847
Bse3DI GCAATG 2 cut(s) 729, 819
BseBI CCWGG 2 cut(s) 40, 339
BseDI CCNNGG 4 cut(s) 172, 574, 622, 762
BseGI GGATG 2 cut(s) 62, 894
BseLI CCNNNNNNNGG 2 cut(s) 274, 877
BseMI GCAATG 2 cut(s) 729, 819
BseMII CTCAG 2 cut(s) 371, 465
BseNI ACTGG 1 cut(s) 847
BseSI GKGCMC 1 cut(s) 917
BseXI GCAGC 2 cut(s) 871, 955
Bsh1236I CGCG 1 cut(s) 415
BshFI GGCC 2 cut(s) 152, 767
BshNI GGYRCC 2 cut(s) 914, 1043
BshTI ACCGGT 1 cut(s) 506
BsiHKAI GWGCWC 1 cut(s) 237
BsiSI CCGG 2 cut(s) 507, 772
BslFI GGGAC 2 cut(s) 247, 564
BslI CCNNNNNNNGG 2 cut(s) 274, 877
BsmAI GTCTC 3 cut(s) 369, 404, 1060
BsmBI CGTCTC 1 cut(s) 369
BsmFI GGGAC 2 cut(s) 247, 564
BsmI GAATGC 1 cut(s) 627
BsnI GGCC 2 cut(s) 152, 767
Bso31I GGTCTC 2 cut(s) 404, 1060
Bsp1286I GDGCHC 2 cut(s) 237, 917
Bsp143I GATC 5 cut(s) 12, 349, 658, 745, 922
Bsp1720I GCTNAGC 1 cut(s) 141
BspACI CCGC 1 cut(s) 413
BspANI GGCC 2 cut(s) 152, 767
BspCNI CTCAG 2 cut(s) 370, 464
BspFNI CGCG 1 cut(s) 415
BspHI TCATGA 2 cut(s) 736, 852
BspLI GGNNCC 3 cut(s) 263, 916, 1045
BspMI ACCTGC 2 cut(s) 223, 964
BspPI GGATC 2 cut(s) 344, 740
BspT107I GGYRCC 2 cut(s) 914, 1043
BspTNI GGTCTC 2 cut(s) 404, 1060
BsrDI GCAATG 2 cut(s) 729, 819
BsrFI RCCGGY 1 cut(s) 506
BsrI ACTGG 1 cut(s) 847
BssAI RCCGGY 1 cut(s) 506
BssECI CCNNGG 4 cut(s) 172, 574, 622, 762
BssMI GATC 5 cut(s) 12, 349, 658, 745, 922
BssT1I CCWWGG 2 cut(s) 172, 574
Bst2UI CCWGG 2 cut(s) 40, 339
Bst4CI ACNGT 5 cut(s) 124, 398, 431, 483, 795
Bst6I CTCTTC 1 cut(s) 3
BstC8I GCNNGC 2 cut(s) 408, 417
BstDEI CTNAG 4 cut(s) 141, 357, 451, 686
BstDSI CCRYGG 1 cut(s) 622
BstEII GGTNACC 1 cut(s) 502
BstF5I GGATG 2 cut(s) 62, 894
BstFNI CGCG 1 cut(s) 415
BstHHI GCGC 1 cut(s) 894
BstKTI GATC 5 cut(s) 15, 352, 661, 748, 925
BstMAI GTCTC 3 cut(s) 369, 404, 1060
BstMBI GATC 5 cut(s) 12, 349, 658, 745, 922
BstMWI GCNNNNNNNGC 6 cut(s) 412, 416, 900, 965, 974, 989
BstNI CCWGG 2 cut(s) 40, 339
BstPI GGTNACC 1 cut(s) 502
BstSCI CCNGG 3 cut(s) 38, 337, 771
BstSFI CTRYAG 1 cut(s) 527
BstSLI GKGCMC 1 cut(s) 917
BstUI CGCG 1 cut(s) 415
BstV1I GCAGC 2 cut(s) 871, 955
BsuRI GGCC 2 cut(s) 152, 767
BtgI CCRYGG 1 cut(s) 622
BtrI CACGTC 1 cut(s) 554
BtsCI GGATG 2 cut(s) 62, 894
BveI ACCTGC 2 cut(s) 223, 964
Cac8I GCNNGC 2 cut(s) 408, 417
CciI TCATGA 2 cut(s) 736, 852
CfoI GCGC 1 cut(s) 894
Cfr10I RCCGGY 1 cut(s) 506
Cfr13I GGNCC 2 cut(s) 261, 941
Csp6I GTAC 1 cut(s) 579
CspAI ACCGGT 1 cut(s) 506
CviAII CATG 7 cut(s) 299, 368, 632, 674, 737, 853, 926
CviQI GTAC 1 cut(s) 579
DdeI CTNAG 4 cut(s) 141, 357, 451, 686
DpnI GATC 5 cut(s) 14, 351, 660, 747, 924
DpnII GATC 5 cut(s) 12, 349, 658, 745, 922
EaeI YGGCCR 1 cut(s) 150
Eam1104I CTCTTC 1 cut(s) 3
EarI CTCTTC 1 cut(s) 3
Eco130I CCWWGG 2 cut(s) 172, 574
Eco31I GGTCTC 2 cut(s) 404, 1060
Eco47I GGWCC 2 cut(s) 261, 941
Eco57I CTGAAG 1 cut(s) 47
Eco91I GGTNACC 1 cut(s) 502
EcoO65I GGTNACC 1 cut(s) 502
EcoRII CCWGG 2 cut(s) 38, 337
EcoT14I CCWWGG 2 cut(s) 172, 574
EcoT22I ATGCAT 2 cut(s) 292, 547
ErhI CCWWGG 2 cut(s) 172, 574
Esp3I CGTCTC 1 cut(s) 369
FaeI CATG 7 cut(s) 302, 371, 635, 677, 740, 856, 929
FalI AAGNNNNNCTT 2 cut(s) 129, 161
FaqI GGGAC 2 cut(s) 247, 564
FatI CATG 7 cut(s) 298, 367, 631, 673, 736, 852, 925
FbaI TGATCA 1 cut(s) 922
Fnu4HI GCNGC 2 cut(s) 885, 969
FokI GGATG 2 cut(s) 49, 881
Fsp4HI GCNGC 2 cut(s) 885, 969
FspBI CTAG 3 cut(s) 74, 252, 810
GlaI GCGC 1 cut(s) 893
GluI GCNGC 2 cut(s) 885, 969
HaeIII GGCC 2 cut(s) 152, 767
HapII CCGG 2 cut(s) 507, 772
HhaI GCGC 1 cut(s) 894
Hin1II CATG 7 cut(s) 302, 371, 635, 677, 740, 856, 929
Hin6I GCGC 1 cut(s) 892
HinP1I GCGC 1 cut(s) 892
HincII GTYRAC 1 cut(s) 860
HindII GTYRAC 1 cut(s) 860
HindIII AAGCTT 1 cut(s) 143
HinfI GANTC 3 cut(s) 43, 856, 1004
HpaII CCGG 2 cut(s) 507, 772
HphI GGTGA 2 cut(s) 419, 496
Hpy166II GTNNAC 3 cut(s) 602, 692, 860
Hpy188III TCNNGA 5 cut(s) 113, 252, 737, 853, 1001
Hpy8I GTNNAC 3 cut(s) 602, 692, 860
Hpy99I CGWCG 1 cut(s) 1014
HpyAV CCTTC 5 cut(s) 451, 734, 761, 778, 908
HpyCH4III ACNGT 5 cut(s) 124, 398, 431, 483, 795
HpyCH4IV ACGT 3 cut(s) 130, 279, 553
HpyCH4V TGCA 3 cut(s) 290, 375, 545
HpyF10VI GCNNNNNNNGC 6 cut(s) 412, 416, 900, 965, 974, 989
HpyF3I CTNAG 4 cut(s) 141, 357, 451, 686
HpySE526I ACGT 3 cut(s) 130, 279, 553
Hsp92II CATG 7 cut(s) 302, 371, 635, 677, 740, 856, 929
HspAI GCGC 1 cut(s) 892
Ksp22I TGATCA 1 cut(s) 922
Kzo9I GATC 5 cut(s) 12, 349, 658, 745, 922
LmnI GCTCC 1 cut(s) 415
Lsp1109I GCAGC 2 cut(s) 871, 955
LweI GCATC 3 cut(s) 532, 903, 970
MaeI CTAG 3 cut(s) 74, 252, 810
MaeII ACGT 3 cut(s) 130, 279, 553
MaeIII GTNAC 3 cut(s) 131, 502, 607
MalI GATC 5 cut(s) 14, 351, 660, 747, 924
MboI GATC 5 cut(s) 12, 349, 658, 745, 922
MboII GAAGA 4 cut(s) 20, 40, 287, 326
MfeI CAATTG 1 cut(s) 272
MhlI GDGCHC 2 cut(s) 237, 917
MlsI TGGCCA 1 cut(s) 152
MluCI AATT 5 cut(s) 272, 641, 777, 835, 985
MluNI TGGCCA 1 cut(s) 152
MlyI GAGTC 2 cut(s) 37, 865
MnlI CCTC 6 cut(s) 248, 275, 448, 772, 954, 974
Mox20I TGGCCA 1 cut(s) 152
Mph1103I ATGCAT 2 cut(s) 292, 547
MscI TGGCCA 1 cut(s) 152
MseI TTAA 4 cut(s) 210, 282, 309, 381
MslI CAYNNNNRTG 1 cut(s) 707
Msp20I TGGCCA 1 cut(s) 152
MspI CCGG 2 cut(s) 507, 772
MspR9I CCNGG 3 cut(s) 40, 339, 773
MunI CAATTG 1 cut(s) 272
Mva1269I GAATGC 1 cut(s) 627
MvaI CCWGG 2 cut(s) 40, 339
MvnI CGCG 1 cut(s) 415
MwoI GCNNNNNNNGC 6 cut(s) 412, 416, 900, 965, 974, 989
NciI CCSGG 1 cut(s) 773
NdeII GATC 5 cut(s) 12, 349, 658, 745, 922
NlaIII CATG 7 cut(s) 302, 371, 635, 677, 740, 856, 929
NlaIV GGNNCC 3 cut(s) 263, 916, 1045
NmeAIII GCCGAG 1 cut(s) 743
NmuCI GTSAC 2 cut(s) 131, 502
NsiI ATGCAT 2 cut(s) 292, 547
PagI TCATGA 2 cut(s) 736, 852
PctI GAATGC 1 cut(s) 627
PfeI GAWTC 1 cut(s) 1004
PfoI TCCNGGA 1 cut(s) 771
PinAI ACCGGT 1 cut(s) 506
PkrI GCNGC 2 cut(s) 886, 970
PleI GAGTC 2 cut(s) 37, 864
PpsI GAGTC 2 cut(s) 37, 864
Psp6I CCWGG 2 cut(s) 38, 337
PspEI GGTNACC 1 cut(s) 502
PspGI CCWGG 2 cut(s) 38, 337
PspN4I GGNNCC 3 cut(s) 263, 916, 1045
PspPI GGNCC 2 cut(s) 261, 941
RsaI GTAC 1 cut(s) 580
RsaNI GTAC 1 cut(s) 579
RseI CAYNNNNRTG 1 cut(s) 707
SaqAI TTAA 4 cut(s) 210, 282, 309, 381
SatI GCNGC 2 cut(s) 885, 969
Sau3AI GATC 5 cut(s) 12, 349, 658, 745, 922
Sau96I GGNCC 2 cut(s) 261, 941
SchI GAGTC 2 cut(s) 37, 865
ScrFI CCNGG 3 cut(s) 40, 339, 773
SduI GDGCHC 2 cut(s) 237, 917
SfaNI GCATC 3 cut(s) 532, 903, 970
SfcI CTRYAG 1 cut(s) 527
SinI GGWCC 2 cut(s) 261, 941
SmiMI CAYNNNNRTG 1 cut(s) 707
SmlI CTYRAG 1 cut(s) 401
SmoI CTYRAG 1 cut(s) 401
Sse9I AATT 5 cut(s) 272, 641, 777, 835, 985
SsiI CCGC 1 cut(s) 413
SspMI CTAG 3 cut(s) 74, 252, 810
StyD4I CCNGG 3 cut(s) 38, 337, 771
StyI CCWWGG 2 cut(s) 172, 574
TaaI ACNGT 5 cut(s) 124, 398, 431, 483, 795
TaiI ACGT 3 cut(s) 133, 282, 556
TaqII GACCGA 1 cut(s) 929
TasI AATT 5 cut(s) 272, 641, 777, 835, 985
TfiI GAWTC 1 cut(s) 1004
Tru1I TTAA 4 cut(s) 210, 282, 309, 381
Tru9I TTAA 4 cut(s) 210, 282, 309, 381
TseFI GTSAC 2 cut(s) 131, 502
TseI GCWGC 2 cut(s) 884, 968
Tsp45I GTSAC 2 cut(s) 131, 502
TspDTI ATGAA 7 cut(s) 152, 204, 287, 452, 620, 753, 841
TspGWI ACGGA 1 cut(s) 257
VpaK11BI GGWCC 2 cut(s) 261, 941
XbaI TCTAGA 1 cut(s) 251
XcmI CCANNNNNNNNNTGG 1 cut(s) 74
XspI CTAG 3 cut(s) 74, 252, 810
Zsp2I ATGCAT 2 cut(s) 292, 547
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.