FvH4_1g06120

Belongs to the GDA1 CD39 NTPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0001988
Physical Location & Seq
Forward (+)
3256693 .. 3259090
2398 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g06120.t1

Sequence Viewer

Length: 468 bp
ATGGTCTTCTACGTCATGCCCTCCCAGATTCCGATTCAGATTCACTCCTCCTCCGACTCCAAGACCTCCTACGCCGTCATCTTCGACGCCGGCAGCTGCGTCCATGTCTTCTGCTTTGACCACAACCTCAACCTCCTCCCCATCGGAAAAGATCTCGAGCTCTTCCTCCAGACCAAGCCCGGTCTCAGCTCCTACGCCTCCAACCCTCGCAGTGCCGCCCTGTCGCTCTCAGATCTCCTCCACAAGGCCGAAGCCGCCGTTCCTAAGGACCTGCGTCCCTTCACCCCCGTCCGCGTCGGCGCAACCGCCAGCCTCCGGGCGTTAGGTGTTGATGCATCTAATCGCATTCTCCAGGCTGTTAGGGATTTGCTCAAGCAGTCAAGCTCCCTCAGCTCCCAACCTGATGCTGTTACTTTTGACAAAATAAGAGACTTAGGGGTGAAGCTCTCCACCAATTATTGGCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko00230 ko00240 map00230 map00240
Pfam Domains
Protein Families
GDA1_CD39

Protein Analysis

156

Amino Acids

16.89

Weight (kDa)

8.6

Isoelectric Point (pI)

53.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GDA1_CD39 PF01150 18 - 137 6.3e-27 GDA1/CD39 (nucleoside phosphatase) family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 279
AccB7I CCANNNNNTGG 1 cut(s) 459
AccII CGCG 1 cut(s) 294
AciI CCGC 4 cut(s) 216, 255, 292, 306
AcyI GRCGYC 1 cut(s) 87
AfiI CCNNNNNNNGG 3 cut(s) 244, 315, 459
AjnI CCWGG 1 cut(s) 351
AluBI AGCT 6 cut(s) 96, 160, 189, 384, 393, 445
AluI AGCT 6 cut(s) 96, 160, 189, 384, 393, 445
Alw21I GWGCWC 1 cut(s) 162
Alw26I GTCTC 2 cut(s) 188, 423
Ama87I CYCGRG 1 cut(s) 155
AoxI GGCC 1 cut(s) 246
ApeKI GCWGC 2 cut(s) 93, 96
AspLEI GCGC 1 cut(s) 302
AspS9I GGNCC 1 cut(s) 268
AsuC2I CCSGG 2 cut(s) 180, 317
AsuHPI GGTGA 2 cut(s) 274, 451
AvaI CYCGRG 1 cut(s) 155
AvaII GGWCC 1 cut(s) 268
AxyI CCTNAGG 1 cut(s) 264
BanII GRGCYC 1 cut(s) 162
BbsI GAAGAC 1 cut(s) 100
Bbv12I GWGCWC 1 cut(s) 162
BbvCI CCTCAGC 1 cut(s) 389
BbvI GCAGC 2 cut(s) 83, 105
BccI CCATC 1 cut(s) 149
BceAI ACGGC 2 cut(s) 59, 242
BciT130I CCWGG 1 cut(s) 353
BcnI CCSGG 2 cut(s) 180, 317
BcoDI GTCTC 2 cut(s) 188, 423
BfuAI ACCTGC 1 cut(s) 279
BglII AGATCT 2 cut(s) 151, 232
BisI GCNGC 4 cut(s) 94, 97, 216, 255
BlsI GCNGC 4 cut(s) 95, 98, 217, 256
Bme1390I CCNGG 3 cut(s) 180, 317, 353
Bme18I GGWCC 1 cut(s) 268
BmeT110I CYCGRG 1 cut(s) 155
BmgT120I GGNCC 1 cut(s) 268
BmrFI CCNGG 3 cut(s) 180, 317, 353
BmsI GCATC 3 cut(s) 322, 344, 394
BoxI GACNNNNGTC 1 cut(s) 273
BpiI GAAGAC 1 cut(s) 100
BpmI CTGGAG 2 cut(s) 152, 335
Bpu10I CCTNAGC 1 cut(s) 389
BpuEI CTTGAG 1 cut(s) 356
BpuMI CCSGG 2 cut(s) 180, 317
BsaHI GRCGYC 1 cut(s) 87
BsaI GGTCTC 1 cut(s) 188
BsaXI ACNNNNNCTCC 2 cut(s) 35, 65
Bsc4I CCNNNNNNNGG 3 cut(s) 244, 315, 459
Bse118I RCCGGY 1 cut(s) 89
Bse21I CCTNAGG 1 cut(s) 264
BseBI CCWGG 1 cut(s) 353
BseLI CCNNNNNNNGG 3 cut(s) 244, 315, 459
BseMII CTCAG 3 cut(s) 199, 243, 403
BseRI GAGGAG 4 cut(s) 37, 40, 125, 227
BseXI GCAGC 2 cut(s) 83, 105
Bsh1236I CGCG 1 cut(s) 294
BshFI GGCC 1 cut(s) 248
BsiHKAI GWGCWC 1 cut(s) 162
BsiHKCI CYCGRG 1 cut(s) 155
BsiSI CCGG 3 cut(s) 90, 180, 316
BslFI GGGAC 1 cut(s) 261
BslI CCNNNNNNNGG 3 cut(s) 244, 315, 459
BsmAI GTCTC 2 cut(s) 188, 423
BsmFI GGGAC 1 cut(s) 261
BsmI GAATGC 1 cut(s) 345
BsnI GGCC 1 cut(s) 248
Bso31I GGTCTC 1 cut(s) 188
BsoBI CYCGRG 1 cut(s) 155
Bsp1286I GDGCHC 1 cut(s) 162
Bsp143I GATC 2 cut(s) 151, 232
BspACI CCGC 4 cut(s) 216, 255, 292, 306
BspANI GGCC 1 cut(s) 248
BspCNI CTCAG 3 cut(s) 198, 242, 402
BspFNI CGCG 1 cut(s) 294
BspMI ACCTGC 1 cut(s) 279
BspQI GCTCTTC 1 cut(s) 167
BspTNI GGTCTC 1 cut(s) 188
BsrFI RCCGGY 1 cut(s) 89
BssAI RCCGGY 1 cut(s) 89
BssMI GATC 2 cut(s) 151, 232
BssNI GRCGYC 1 cut(s) 87
Bst2UI CCWGG 1 cut(s) 353
Bst6I CTCTTC 1 cut(s) 167
BstACI GRCGYC 1 cut(s) 87
BstC8I GCNNGC 2 cut(s) 91, 310
BstDEI CTNAG 5 cut(s) 185, 229, 264, 389, 433
BstENI CCTNNNNNAGG 1 cut(s) 242
BstFNI CGCG 1 cut(s) 294
BstHHI GCGC 1 cut(s) 302
BstKTI GATC 2 cut(s) 154, 235
BstMAI GTCTC 2 cut(s) 188, 423
BstMBI GATC 2 cut(s) 151, 232
BstMWI GCNNNNNNNGC 2 cut(s) 254, 390
BstNI CCWGG 1 cut(s) 353
BstPAI GACNNNNGTC 1 cut(s) 273
BstSCI CCNGG 3 cut(s) 178, 315, 351
BstUI CGCG 1 cut(s) 294
BstV1I GCAGC 2 cut(s) 83, 105
BstV2I GAAGAC 1 cut(s) 100
BstX2I RGATCY 2 cut(s) 151, 232
BstYI RGATCY 2 cut(s) 151, 232
Bsu36I CCTNAGG 1 cut(s) 264
BsuRI GGCC 1 cut(s) 248
BtsI GCAGTG 1 cut(s) 217
BtsIMutI CAGTG 1 cut(s) 217
BveI ACCTGC 1 cut(s) 279
Cac8I GCNNGC 2 cut(s) 91, 310
CfoI GCGC 1 cut(s) 302
Cfr10I RCCGGY 1 cut(s) 89
Cfr13I GGNCC 1 cut(s) 268
CseI GACGC 4 cut(s) 88, 95, 263, 283
CviAII CATG 2 cut(s) 16, 104
DdeI CTNAG 5 cut(s) 185, 229, 264, 389, 433
DpnI GATC 2 cut(s) 153, 234
DpnII GATC 2 cut(s) 151, 232
Eam1104I CTCTTC 1 cut(s) 167
EarI CTCTTC 1 cut(s) 167
Ecl136II GAGCTC 1 cut(s) 160
Eco24I GRGCYC 1 cut(s) 162
Eco31I GGTCTC 1 cut(s) 188
Eco47I GGWCC 1 cut(s) 268
Eco53kI GAGCTC 1 cut(s) 160
Eco81I CCTNAGG 1 cut(s) 264
Eco88I CYCGRG 1 cut(s) 155
EcoICRI GAGCTC 1 cut(s) 160
EcoNI CCTNNNNNAGG 1 cut(s) 242
EcoO109I RGGNCCY 1 cut(s) 268
EcoRII CCWGG 1 cut(s) 351
EcoT22I ATGCAT 1 cut(s) 337
EcoT38I GRGCYC 1 cut(s) 162
FaeI CATG 2 cut(s) 19, 107
FaiI YATR 2 cut(s) 17, 105
FaqI GGGAC 1 cut(s) 261
FatI CATG 2 cut(s) 15, 103
Fnu4HI GCNGC 4 cut(s) 94, 97, 216, 255
FriOI GRGCYC 1 cut(s) 162
Fsp4HI GCNGC 4 cut(s) 94, 97, 216, 255
GlaI GCGC 1 cut(s) 301
GluI GCNGC 4 cut(s) 94, 97, 216, 255
GsuI CTGGAG 2 cut(s) 152, 335
HaeIII GGCC 1 cut(s) 248
HapII CCGG 3 cut(s) 90, 180, 316
HgaI GACGC 4 cut(s) 88, 95, 263, 283
HhaI GCGC 1 cut(s) 302
Hin1I GRCGYC 1 cut(s) 87
Hin1II CATG 2 cut(s) 19, 107
Hin6I GCGC 1 cut(s) 300
HinP1I GCGC 1 cut(s) 300
HinfI GANTC 4 cut(s) 28, 34, 40, 56
HpaII CCGG 3 cut(s) 90, 180, 316
HphI GGTGA 2 cut(s) 274, 451
Hpy188I TCNGA 5 cut(s) 33, 39, 55, 146, 232
Hpy188III TCNNGA 2 cut(s) 155, 169
Hpy99I CGWCG 2 cut(s) 89, 299
HpyAV CCTTC 1 cut(s) 289
HpyCH4IV ACGT 1 cut(s) 12
HpyCH4V TGCA 1 cut(s) 335
HpyF10VI GCNNNNNNNGC 2 cut(s) 254, 390
HpyF3I CTNAG 5 cut(s) 185, 229, 264, 389, 433
HpySE526I ACGT 1 cut(s) 12
Hsp92I GRCGYC 1 cut(s) 87
Hsp92II CATG 2 cut(s) 19, 107
HspAI GCGC 1 cut(s) 300
KroI GCCGGC 1 cut(s) 89
KroNI GCCGGC 1 cut(s) 91
Kzo9I GATC 2 cut(s) 151, 232
LguI GCTCTTC 1 cut(s) 167
LmnI GCTCC 3 cut(s) 194, 389, 398
Lsp1109I GCAGC 2 cut(s) 83, 105
LweI GCATC 3 cut(s) 322, 344, 394
MaeII ACGT 1 cut(s) 12
MaeIII GTNAC 1 cut(s) 409
MalI GATC 2 cut(s) 153, 234
MboI GATC 2 cut(s) 151, 232
MboII GAAGA 3 cut(s) 73, 100, 154
MflI RGATCY 2 cut(s) 151, 232
MhlI GDGCHC 1 cut(s) 162
MluCI AATT 1 cut(s) 454
MlyI GAGTC 1 cut(s) 50
MmeI TCCRAC 2 cut(s) 78, 225
Mph1103I ATGCAT 1 cut(s) 337
MroNI GCCGGC 1 cut(s) 89
MspA1I CMGCKG 1 cut(s) 96
MspI CCGG 3 cut(s) 90, 180, 316
MspR9I CCNGG 3 cut(s) 180, 317, 353
Mva1269I GAATGC 1 cut(s) 345
MvaI CCWGG 1 cut(s) 353
MvnI CGCG 1 cut(s) 294
MwoI GCNNNNNNNGC 2 cut(s) 254, 390
NaeI GCCGGC 1 cut(s) 91
NciI CCSGG 2 cut(s) 180, 317
NdeII GATC 2 cut(s) 151, 232
NgoMIV GCCGGC 1 cut(s) 89
NlaIII CATG 2 cut(s) 19, 107
NsiI ATGCAT 1 cut(s) 337
PaeR7I CTCGAG 1 cut(s) 155
PciSI GCTCTTC 1 cut(s) 167
PctI GAATGC 1 cut(s) 345
PdiI GCCGGC 1 cut(s) 91
PfeI GAWTC 3 cut(s) 28, 34, 40
PflMI CCANNNNNTGG 1 cut(s) 459
PkrI GCNGC 4 cut(s) 95, 98, 217, 256
PleI GAGTC 1 cut(s) 50
PpsI GAGTC 1 cut(s) 50
PpuMI RGGWCCY 1 cut(s) 268
PshAI GACNNNNGTC 1 cut(s) 273
Psp124BI GAGCTC 1 cut(s) 162
Psp5II RGGWCCY 1 cut(s) 268
Psp6I CCWGG 1 cut(s) 351
PspGI CCWGG 1 cut(s) 351
PspPI GGNCC 1 cut(s) 268
PspPPI RGGWCCY 1 cut(s) 268
PsuI RGATCY 2 cut(s) 151, 232
PvuII CAGCTG 1 cut(s) 96
SacI GAGCTC 1 cut(s) 162
SapI GCTCTTC 1 cut(s) 167
SatI GCNGC 4 cut(s) 94, 97, 216, 255
Sau3AI GATC 2 cut(s) 151, 232
Sau96I GGNCC 1 cut(s) 268
SchI GAGTC 1 cut(s) 50
ScrFI CCNGG 3 cut(s) 180, 317, 353
SduI GDGCHC 1 cut(s) 162
SfaNI GCATC 3 cut(s) 322, 344, 394
Sfr274I CTCGAG 1 cut(s) 155
SinI GGWCC 1 cut(s) 268
SlaI CTCGAG 1 cut(s) 155
SmlI CTYRAG 2 cut(s) 155, 371
SmoI CTYRAG 2 cut(s) 155, 371
Sse9I AATT 1 cut(s) 454
SsiI CCGC 4 cut(s) 216, 255, 292, 306
SstI GAGCTC 1 cut(s) 162
StyD4I CCNGG 3 cut(s) 178, 315, 351
TaiI ACGT 1 cut(s) 15
TaqI TCGA 2 cut(s) 84, 156
TasI AATT 1 cut(s) 454
TauI GCSGC 2 cut(s) 218, 257
TfiI GAWTC 3 cut(s) 28, 34, 40
TscAI CASTG 1 cut(s) 217
TseI GCWGC 2 cut(s) 93, 96
TspRI CASTG 1 cut(s) 217
Van91I CCANNNNNTGG 1 cut(s) 459
VpaK11BI GGWCC 1 cut(s) 268
XagI CCTNNNNNAGG 1 cut(s) 242
XhoI CTCGAG 1 cut(s) 155
Zsp2I ATGCAT 1 cut(s) 337
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.