Rh5BG414200

Belongs to the GDA1 CD39 NTPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0001988
Physical Location & Seq
Forward (+)
67180462 .. 67181232
771 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG414200.1

Sequence Viewer

Length: 420 bp
ATGCTCAAACGTCCCACCAAAGATAGCATCGACTCCCTCTCTAATAAGTTCTACAGGTACCAGAGCCTCCTCCTCCTCTTGACCACGCTCCTCTACCTAACGCCCTCCTCTCACATTCCTATCCAGACTCTCGCTTCCACTTCCTACTCAGTCATCTTTGACACCAGAAGCTATGGTAGCCGCGTTCATGTCTTCTCCTTTGACCGCAACCTCAATGTGCTCCCCATCGATAAAGATCTCGACCTCTTCCTTCAGATCAAGCCGGAGCTCAGCTTCTACGCCGCCGACCCTCGCAGCGCCACCCAGTCACTCACCAATCTCATCCAAAAGGCGAAGGCCGCCTTTCCCAAAGATCTTCTATCCATGGTTTCCCGACCCAGAAAACCAACCCCAAGAAATTTTCTTTTCTTTTTTATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko00230 ko00240 map00230 map00240
Pfam Domains
Protein Families
GDA1_CD39

Protein Analysis

139

Amino Acids

16.0

Weight (kDa)

9.93

Isoelectric Point (pI)

45.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GDA1_CD39 PF01150 46 - 120 3.5e-12 GDA1/CD39 (nucleoside phosphatase) family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 57
AccB1I GGYRCC 1 cut(s) 57
AccII CGCG 1 cut(s) 183
AciI CCGC 4 cut(s) 181, 205, 282, 339
AcsI RAATTY 1 cut(s) 397
AcuI CTGAAG 1 cut(s) 236
AfaI GTAC 1 cut(s) 59
AluBI AGCT 3 cut(s) 171, 268, 273
AluI AGCT 3 cut(s) 171, 268, 273
Alw21I GWGCWC 2 cut(s) 222, 270
AoxI GGCC 1 cut(s) 336
ApeKI GCWGC 1 cut(s) 294
ApoI RAATTY 1 cut(s) 397
Asp718I GGTACC 1 cut(s) 57
AspLEI GCGC 1 cut(s) 299
AsuHPI GGTGA 1 cut(s) 304
BanI GGYRCC 1 cut(s) 57
BanII GRGCYC 1 cut(s) 270
BbsI GAAGAC 1 cut(s) 184
Bbv12I GWGCWC 2 cut(s) 222, 270
BbvI GCAGC 1 cut(s) 306
BccI CCATC 1 cut(s) 233
BfmI CTRYAG 1 cut(s) 52
BfoI RGCGCY 1 cut(s) 300
BglII AGATCT 2 cut(s) 235, 352
BisI GCNGC 4 cut(s) 181, 282, 295, 339
BlpI GCTNAGC 1 cut(s) 269
BlsI GCNGC 4 cut(s) 182, 283, 296, 340
BmiI GGNNCC 1 cut(s) 59
BmrI ACTGGG 1 cut(s) 298
BmsI GCATC 1 cut(s) 36
BmuI ACTGGG 1 cut(s) 298
BpiI GAAGAC 1 cut(s) 184
Bpu1102I GCTNAGC 1 cut(s) 269
Bsa29I ATCGAT 1 cut(s) 228
BsaBI GATNNNNATC 1 cut(s) 234
BsaJI CCNNGG 1 cut(s) 363
Bse1I ACTGG 1 cut(s) 304
Bse8I GATNNNNATC 1 cut(s) 234
BseCI ATCGAT 1 cut(s) 228
BseDI CCNNGG 1 cut(s) 363
BseGI GGATG 1 cut(s) 321
BseJI GATNNNNATC 1 cut(s) 234
BseMII CTCAG 2 cut(s) 162, 283
BseNI ACTGG 1 cut(s) 304
BseRI GAGGAG 5 cut(s) 59, 62, 65, 80, 97
BseXI GCAGC 1 cut(s) 306
Bsh1236I CGCG 1 cut(s) 183
BshFI GGCC 1 cut(s) 338
BshNI GGYRCC 1 cut(s) 57
BshVI ATCGAT 1 cut(s) 228
BsiHKAI GWGCWC 2 cut(s) 222, 270
BsiSI CCGG 1 cut(s) 263
BsnI GGCC 1 cut(s) 338
Bsp1286I GDGCHC 2 cut(s) 222, 270
Bsp143I GATC 3 cut(s) 235, 255, 352
Bsp1720I GCTNAGC 1 cut(s) 269
Bsp19I CCATGG 1 cut(s) 363
BspACI CCGC 4 cut(s) 181, 205, 282, 339
BspANI GGCC 1 cut(s) 338
BspCNI CTCAG 2 cut(s) 161, 282
BspDI ATCGAT 1 cut(s) 228
BspFNI CGCG 1 cut(s) 183
BspLI GGNNCC 1 cut(s) 59
BspT107I GGYRCC 1 cut(s) 57
BsrI ACTGG 1 cut(s) 304
BssECI CCNNGG 1 cut(s) 363
BssMI GATC 3 cut(s) 235, 255, 352
BssT1I CCWWGG 1 cut(s) 363
Bst6I CTCTTC 1 cut(s) 251
BstDEI CTNAG 2 cut(s) 148, 269
BstDSI CCRYGG 1 cut(s) 363
BstF5I GGATG 1 cut(s) 321
BstFNI CGCG 1 cut(s) 183
BstH2I RGCGCY 1 cut(s) 300
BstHHI GCGC 1 cut(s) 299
BstKTI GATC 3 cut(s) 238, 258, 355
BstMBI GATC 3 cut(s) 235, 255, 352
BstMWI GCNNNNNNNGC 2 cut(s) 177, 338
BstSFI CTRYAG 1 cut(s) 52
BstUI CGCG 1 cut(s) 183
BstV1I GCAGC 1 cut(s) 306
BstV2I GAAGAC 1 cut(s) 184
BstX2I RGATCY 2 cut(s) 235, 352
BstYI RGATCY 2 cut(s) 235, 352
Bsu15I ATCGAT 1 cut(s) 228
BsuRI GGCC 1 cut(s) 338
BsuTUI ATCGAT 1 cut(s) 228
BtgI CCRYGG 1 cut(s) 363
BtsCI GGATG 1 cut(s) 321
CfoI GCGC 1 cut(s) 299
ClaI ATCGAT 1 cut(s) 228
Csp6I GTAC 1 cut(s) 58
CviAII CATG 2 cut(s) 188, 364
CviJI RGCY 7 cut(s) 66, 171, 180, 262, 268, 273, 338
CviKI_1 RGCY 7 cut(s) 66, 171, 180, 262, 268, 273, 338
CviQI GTAC 1 cut(s) 58
DdeI CTNAG 2 cut(s) 148, 269
DpnI GATC 3 cut(s) 237, 257, 354
DpnII GATC 3 cut(s) 235, 255, 352
Eam1104I CTCTTC 1 cut(s) 251
EarI CTCTTC 1 cut(s) 251
Ecl136II GAGCTC 1 cut(s) 268
Eco130I CCWWGG 1 cut(s) 363
Eco24I GRGCYC 1 cut(s) 270
Eco53kI GAGCTC 1 cut(s) 268
Eco57I CTGAAG 1 cut(s) 236
EcoICRI GAGCTC 1 cut(s) 268
EcoT14I CCWWGG 1 cut(s) 363
EcoT38I GRGCYC 1 cut(s) 270
ErhI CCWWGG 1 cut(s) 363
FaeI CATG 2 cut(s) 191, 367
FaiI YATR 3 cut(s) 174, 189, 365
FalI AAGNNNNNCTT 2 cut(s) 326, 358
FatI CATG 2 cut(s) 187, 363
Fnu4HI GCNGC 4 cut(s) 181, 282, 295, 339
FokI GGATG 1 cut(s) 308
FriOI GRGCYC 1 cut(s) 270
Fsp4HI GCNGC 4 cut(s) 181, 282, 295, 339
GlaI GCGC 1 cut(s) 298
GluI GCNGC 4 cut(s) 181, 282, 295, 339
HaeII RGCGCY 1 cut(s) 300
HaeIII GGCC 1 cut(s) 338
HapII CCGG 1 cut(s) 263
HhaI GCGC 1 cut(s) 299
Hin1II CATG 2 cut(s) 191, 367
Hin6I GCGC 1 cut(s) 297
HinP1I GCGC 1 cut(s) 297
HinfI GANTC 2 cut(s) 32, 127
HpaII CCGG 1 cut(s) 263
HphI GGTGA 1 cut(s) 304
Hpy188I TCNGA 1 cut(s) 255
Hpy188III TCNNGA 4 cut(s) 79, 124, 239, 372
HpyAV CCTTC 2 cut(s) 260, 328
HpyCH4IV ACGT 1 cut(s) 10
HpyF10VI GCNNNNNNNGC 2 cut(s) 177, 338
HpyF3I CTNAG 2 cut(s) 148, 269
HpySE526I ACGT 1 cut(s) 10
Hsp92II CATG 2 cut(s) 191, 367
HspAI GCGC 1 cut(s) 297
KpnI GGTACC 1 cut(s) 61
Kzo9I GATC 3 cut(s) 235, 255, 352
LmnI GCTCC 3 cut(s) 93, 225, 265
LpnPI CCDG 7 cut(s) 40, 74, 137, 178, 276, 317, 391
Lsp1109I GCAGC 1 cut(s) 306
LweI GCATC 1 cut(s) 36
MaeII ACGT 1 cut(s) 10
MaeIII GTNAC 1 cut(s) 306
MalI GATC 3 cut(s) 237, 257, 354
MboI GATC 3 cut(s) 235, 255, 352
MboII GAAGA 3 cut(s) 184, 238, 347
MflI RGATCY 2 cut(s) 235, 352
MhlI GDGCHC 2 cut(s) 222, 270
MluCI AATT 1 cut(s) 397
MlyI GAGTC 2 cut(s) 26, 121
MseI TTAA 1 cut(s) 418
MspI CCGG 1 cut(s) 263
MvnI CGCG 1 cut(s) 183
MwoI GCNNNNNNNGC 2 cut(s) 177, 338
NcoI CCATGG 1 cut(s) 363
NdeII GATC 3 cut(s) 235, 255, 352
NlaIII CATG 2 cut(s) 191, 367
NlaIV GGNNCC 1 cut(s) 59
NmuCI GTSAC 1 cut(s) 306
PkrI GCNGC 4 cut(s) 182, 283, 296, 340
PleI GAGTC 2 cut(s) 26, 121
PpsI GAGTC 2 cut(s) 26, 121
Psp124BI GAGCTC 1 cut(s) 270
PspN4I GGNNCC 1 cut(s) 59
PsuI RGATCY 2 cut(s) 235, 352
RsaI GTAC 1 cut(s) 59
RsaNI GTAC 1 cut(s) 58
SacI GAGCTC 1 cut(s) 270
SaqAI TTAA 1 cut(s) 418
SatI GCNGC 4 cut(s) 181, 282, 295, 339
Sau3AI GATC 3 cut(s) 235, 255, 352
SchI GAGTC 2 cut(s) 26, 121
SduI GDGCHC 2 cut(s) 222, 270
SetI ASST 8 cut(s) 13, 59, 99, 173, 213, 246, 270, 275
SfaNI GCATC 1 cut(s) 36
SfcI CTRYAG 1 cut(s) 52
Sse9I AATT 1 cut(s) 397
SsiI CCGC 4 cut(s) 181, 205, 282, 339
SstI GAGCTC 1 cut(s) 270
StyI CCWWGG 1 cut(s) 363
TaiI ACGT 1 cut(s) 13
TaqI TCGA 3 cut(s) 30, 228, 240
TasI AATT 1 cut(s) 397
TauI GCSGC 3 cut(s) 183, 284, 341
Tru1I TTAA 1 cut(s) 418
Tru9I TTAA 1 cut(s) 418
TseFI GTSAC 1 cut(s) 306
TseI GCWGC 1 cut(s) 294
Tsp45I GTSAC 1 cut(s) 306
TspDTI ATGAA 1 cut(s) 176
XapI RAATTY 1 cut(s) 397
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.