Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0001988

Physical Location & Seq

Genomic Coordinates Reverse (-)

36189224 .. 36190873

Gene Structure 1650 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g43400.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGGTCTTCTACATCATGCCCTCCCAGACTCCGATTCAGATTCACTCCTCCTCGGACTCCAAGACCTCTTACGCCGGCAGCTCCGGCAGCTGCGTCCACGTCTTCTGCTTCGACCACAACCTCAACCTCCTCCCCATCGGAAAAAATCTCGAGCTCTTCTTCCAGACCAAGCCCGGTGTTGATGCATCTAATCGCATTCTCCAGGCCGTTAGGGATTTGCTCAAGCAGTCAAGCTCCCTCAGCTCCCAACCTGATGCTGTTACTGTATATAATGGTCATAGGAAAACTGTATTGCAAGTTTACTACCCCCAAAAGAAGTTTACTAAGGTGAGACTCCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 map00230 map00240

Pfam Domains

Protein Families

GDA1_CD39

Protein Analysis

114

Amino Acids

12.71

Weight (kDa)

9.7

Isoelectric Point (pI)

55.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001988)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04080 AT5G18280
fragaria_vesca	FvH4_1g06120 FvH4_2g05580 FvH4_2g09140 FvH4_3g22560 FvH4_3g25500 FvH4_3g25500 FvH4_3g25500 FvH4_3g25500 FvH4_3g27620 FvH4_3g43400 FvH4_4g04510 FvH4_4g13450 FvH4_5g09060 FvH4_5g09060 FvH4_6g11760 FvH4_7g24690 FvH4_7g31870 FvH4_7g32182
malus_domestica	MD12G1000500.v1.1 MD14G1000200.v1.1
prunus_persica	Prupe.7G001000_v2.0.a1
pyrus_communis	pycom12g00050 pycom49g00020
rosa_chinensis	RchiOBHm_Chr3g0448171
rosa_laevigata	RLG00000025941 RLG00000032143
rosa_multiflora	Rmu_co8422855.1_g000001 Rmu_sc0000338.1_g000002 Rmu_sc0000689.1_g000004 Rmu_sc0005969.1_g000033 Rmu_sc0023103.1_g000001
rosa_roxburghii	Rroxscaffold_6G00426310
rosa_rugosa	Rorug02G0608500
rosa_samantha	Rh3AG008500 Rh3BG008000 Rh3CG008100 Rh3DG008700 Rh5BG414200 Rh5CG438800 Rh5DG428800 Rh7BG268700 Rh7BG430700
rosa_wichuraiana	Rw3G000670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AjiI	CACGTC	1 cut(s)	100
AjnI	CCWGG	1 cut(s)	201
AluBI	AGCT	5 cut(s)	81, 90, 154, 234, 243
AluI	AGCT	5 cut(s)	81, 90, 154, 234, 243
Alw21I	GWGCWC	1 cut(s)	156
Alw26I	GTCTC	1 cut(s)	325
Ama87I	CYCGRG	1 cut(s)	149
AoxI	GGCC	1 cut(s)	204
ApeKI	GCWGC	3 cut(s)	78, 87, 90
AsuC2I	CCSGG	1 cut(s)	174
AsuHPI	GGTGA	1 cut(s)	340
AvaI	CYCGRG	1 cut(s)	149
BanII	GRGCYC	1 cut(s)	156
BbsI	GAAGAC	1 cut(s)	94
Bbv12I	GWGCWC	1 cut(s)	156
BbvCI	CCTCAGC	1 cut(s)	239
BbvI	GCAGC	3 cut(s)	77, 90, 99
BccI	CCATC	1 cut(s)	143
BceAI	ACGGC	1 cut(s)	191
BciT130I	CCWGG	1 cut(s)	203
BcnI	CCSGG	1 cut(s)	174
BcoDI	GTCTC	1 cut(s)	325
BisI	GCNGC	3 cut(s)	79, 88, 91
BlsI	GCNGC	3 cut(s)	80, 89, 92
Bme1390I	CCNGG	2 cut(s)	174, 203
BmeT110I	CYCGRG	1 cut(s)	149
BmgBI	CACGTC	1 cut(s)	100
BmrFI	CCNGG	2 cut(s)	174, 203
BmsI	GCATC	3 cut(s)	172, 194, 244
BpiI	GAAGAC	1 cut(s)	94
BpmI	CTGGAG	1 cut(s)	185
Bpu10I	CCTNAGC	1 cut(s)	239
BpuEI	CTTGAG	1 cut(s)	206
BpuMI	CCSGG	1 cut(s)	174
BsaJI	CCNNGG	1 cut(s)	51
BsaWI	WCCGGW	1 cut(s)	336
Bse118I	RCCGGY	1 cut(s)	74
BseBI	CCWGG	1 cut(s)	203
BseDI	CCNNGG	1 cut(s)	51
BseMII	CTCAG	1 cut(s)	253
BseRI	GAGGAG	3 cut(s)	37, 40, 119
BseXI	GCAGC	3 cut(s)	77, 90, 99
BshFI	GGCC	1 cut(s)	206
BsiHKAI	GWGCWC	1 cut(s)	156
BsiHKCI	CYCGRG	1 cut(s)	149
BsiSI	CCGG	4 cut(s)	75, 84, 174, 337
BsmAI	GTCTC	1 cut(s)	325
BsmI	GAATGC	1 cut(s)	195
BsnI	GGCC	1 cut(s)	206
BsoBI	CYCGRG	1 cut(s)	149
Bsp1286I	GDGCHC	1 cut(s)	156
BspANI	GGCC	1 cut(s)	206
BspCNI	CTCAG	1 cut(s)	252
BspQI	GCTCTTC	1 cut(s)	161
BsrFI	RCCGGY	1 cut(s)	74
BssAI	RCCGGY	1 cut(s)	74
BssECI	CCNNGG	1 cut(s)	51
Bst2UI	CCWGG	1 cut(s)	203
Bst4CI	ACNGT	2 cut(s)	265, 289
Bst6I	CTCTTC	1 cut(s)	161
BstC8I	GCNNGC	1 cut(s)	76
BstDEI	CTNAG	2 cut(s)	239, 324
BstMAI	GTCTC	1 cut(s)	325
BstMWI	GCNNNNNNNGC	3 cut(s)	84, 87, 240
BstNI	CCWGG	1 cut(s)	203
BstSCI	CCNGG	2 cut(s)	172, 201
BstV1I	GCAGC	3 cut(s)	77, 90, 99
BstV2I	GAAGAC	1 cut(s)	94
BsuRI	GGCC	1 cut(s)	206
BtrI	CACGTC	1 cut(s)	100
Cac8I	GCNNGC	1 cut(s)	76
Cfr10I	RCCGGY	1 cut(s)	74
CseI	GACGC	1 cut(s)	82
CviAII	CATG	1 cut(s)	16
CviJI	RGCY	7 cut(s)	81, 90, 154, 172, 206, 234, 243
CviKI_1	RGCY	7 cut(s)	81, 90, 154, 172, 206, 234, 243
DdeI	CTNAG	2 cut(s)	239, 324
Eam1104I	CTCTTC	1 cut(s)	161
EarI	CTCTTC	1 cut(s)	161
Ecl136II	GAGCTC	1 cut(s)	154
Eco24I	GRGCYC	1 cut(s)	156
Eco53kI	GAGCTC	1 cut(s)	154
Eco88I	CYCGRG	1 cut(s)	149
EcoICRI	GAGCTC	1 cut(s)	154
EcoRII	CCWGG	1 cut(s)	201
EcoT22I	ATGCAT	1 cut(s)	187
EcoT38I	GRGCYC	1 cut(s)	156
FaeI	CATG	1 cut(s)	19
FaiI	YATR	4 cut(s)	17, 268, 270, 279
FatI	CATG	1 cut(s)	15
Fnu4HI	GCNGC	3 cut(s)	79, 88, 91
FriOI	GRGCYC	1 cut(s)	156
Fsp4HI	GCNGC	3 cut(s)	79, 88, 91
GluI	GCNGC	3 cut(s)	79, 88, 91
GsuI	CTGGAG	1 cut(s)	185
HaeIII	GGCC	1 cut(s)	206
HapII	CCGG	4 cut(s)	75, 84, 174, 337
HgaI	GACGC	1 cut(s)	82
Hin1II	CATG	1 cut(s)	19
HinfI	GANTC	5 cut(s)	28, 34, 40, 56, 333
HpaII	CCGG	4 cut(s)	75, 84, 174, 337
HphI	GGTGA	1 cut(s)	340
Hpy166II	GTNNAC	3 cut(s)	97, 301, 321
Hpy188I	TCNGA	4 cut(s)	33, 39, 55, 140
Hpy188III	TCNNGA	2 cut(s)	149, 163
Hpy8I	GTNNAC	3 cut(s)	97, 301, 321
HpyCH4III	ACNGT	2 cut(s)	265, 289
HpyCH4IV	ACGT	1 cut(s)	99
HpyCH4V	TGCA	2 cut(s)	185, 295
HpyF10VI	GCNNNNNNNGC	3 cut(s)	84, 87, 240
HpyF3I	CTNAG	2 cut(s)	239, 324
HpySE526I	ACGT	1 cut(s)	99
Hsp92II	CATG	1 cut(s)	19
KroI	GCCGGC	1 cut(s)	74
KroNI	GCCGGC	1 cut(s)	76
LguI	GCTCTTC	1 cut(s)	161
LmnI	GCTCC	3 cut(s)	86, 239, 248
LpnPI	CCDG	8 cut(s)	38, 88, 97, 176, 187, 188, 215, 264
Lsp1109I	GCAGC	3 cut(s)	77, 90, 99
LweI	GCATC	3 cut(s)	172, 194, 244
MaeII	ACGT	1 cut(s)	99
MaeIII	GTNAC	1 cut(s)	259
MboII	GAAGA	3 cut(s)	94, 148, 151
MhlI	GDGCHC	1 cut(s)	156
MlyI	GAGTC	3 cut(s)	22, 50, 327
MnlI	CCTC	8 cut(s)	31, 58, 61, 76, 131, 137, 140, 248
Mph1103I	ATGCAT	1 cut(s)	187
MroNI	GCCGGC	1 cut(s)	74
MspA1I	CMGCKG	1 cut(s)	90
MspI	CCGG	4 cut(s)	75, 84, 174, 337
MspR9I	CCNGG	2 cut(s)	174, 203
Mva1269I	GAATGC	1 cut(s)	195
MvaI	CCWGG	1 cut(s)	203
MwoI	GCNNNNNNNGC	3 cut(s)	84, 87, 240
NaeI	GCCGGC	1 cut(s)	76
NciI	CCSGG	1 cut(s)	174
NgoMIV	GCCGGC	1 cut(s)	74
NlaIII	CATG	1 cut(s)	19
NsiI	ATGCAT	1 cut(s)	187
PaeR7I	CTCGAG	1 cut(s)	149
PciSI	GCTCTTC	1 cut(s)	161
PctI	GAATGC	1 cut(s)	195
PdiI	GCCGGC	1 cut(s)	76
PfeI	GAWTC	2 cut(s)	34, 40
PkrI	GCNGC	3 cut(s)	80, 89, 92
PleI	GAGTC	3 cut(s)	22, 50, 327
PpsI	GAGTC	3 cut(s)	22, 50, 327
Psp124BI	GAGCTC	1 cut(s)	156
Psp6I	CCWGG	1 cut(s)	201
PspGI	CCWGG	1 cut(s)	201
PvuII	CAGCTG	1 cut(s)	90
SacI	GAGCTC	1 cut(s)	156
SapI	GCTCTTC	1 cut(s)	161
SatI	GCNGC	3 cut(s)	79, 88, 91
SchI	GAGTC	3 cut(s)	22, 50, 327
ScrFI	CCNGG	2 cut(s)	174, 203
SduI	GDGCHC	1 cut(s)	156
SfaNI	GCATC	3 cut(s)	172, 194, 244
Sfr274I	CTCGAG	1 cut(s)	149
SlaI	CTCGAG	1 cut(s)	149
SmlI	CTYRAG	2 cut(s)	149, 221
SmoI	CTYRAG	2 cut(s)	149, 221
SstI	GAGCTC	1 cut(s)	156
StyD4I	CCNGG	2 cut(s)	172, 201
TaaI	ACNGT	2 cut(s)	265, 289
TaiI	ACGT	1 cut(s)	102
TaqI	TCGA	2 cut(s)	111, 150
TfiI	GAWTC	2 cut(s)	34, 40
TseI	GCWGC	3 cut(s)	78, 87, 90
XhoI	CTCGAG	1 cut(s)	149
Zsp2I	ATGCAT	1 cut(s)	187

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.