FvH4_3g27620

Belongs to the GDA1 CD39 NTPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0001988
Physical Location & Seq
Forward (+)
20688608 .. 20689920
1313 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g27620.t1

Sequence Viewer

Length: 525 bp
ATGAAACTGACTTCTTCTAAAGCTGATAGTTCCAACCTTAGGATTGTGCTTTCGCTACGCCTCAACAGAGGTGGCTACAACATGAACAACACTCACACAAGAAGGAGATTCACTCCTCCTCCGACTCCAAGACCTCCTACGCCGTCATCTTCGACGCCGGCAGCTCCGGCAGCCGCGTCCACGTCTTCTGCTTCGACCACAACCTCAACCTCCTCCCCATCGGAAAAAGATCTCGAGCTCTTCCTCCAGACCAAGCCCGGTCTCAGCTCCTACTCCTCCAACCCTCGCAGCGCCACCCTGTCGCTCTCAGATCTCTTCCACAAGGTCGAAGTCGCCGTTCCTAAGGACCTGTGTCCCTTCACCCCCGTCCGCGTCGGCACAACCGCCGACCTCCGGGCGTTAGGTGTTGATGCATCTAATCGCATTCTCCAGGCCGTTAGGGATTTGCTCAAGCAGTCAAGCTCCCTCAGCTCCCAACCTGATGCTGTTACTGTCATCGACGGAACTAAAGTTTACTGGAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko00230 ko00240 map00230 map00240
Pfam Domains
Protein Families
GDA1_CD39

Protein Analysis

175

Amino Acids

18.63

Weight (kDa)

10.22

Isoelectric Point (pI)

55.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GDA1_CD39 PF01150 69 - 170 1.4e-17 GDA1/CD39 (nucleoside phosphatase) family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 176, 372
AciI CCGC 3 cut(s) 174, 370, 384
AcyI GRCGYC 1 cut(s) 155
AfiI CCNNNNNNNGG 2 cut(s) 39, 393
AjiI CACGTC 1 cut(s) 183
AjnI CCWGG 1 cut(s) 429
AluBI AGCT 6 cut(s) 23, 164, 238, 267, 462, 471
AluI AGCT 6 cut(s) 23, 164, 238, 267, 462, 471
Alw21I GWGCWC 1 cut(s) 240
Alw26I GTCTC 1 cut(s) 266
Ama87I CYCGRG 1 cut(s) 233
AoxI GGCC 1 cut(s) 432
ApeKI GCWGC 3 cut(s) 161, 170, 288
AspLEI GCGC 1 cut(s) 293
AspS9I GGNCC 1 cut(s) 346
AsuC2I CCSGG 2 cut(s) 258, 395
AsuHPI GGTGA 1 cut(s) 352
AvaI CYCGRG 1 cut(s) 233
AvaII GGWCC 1 cut(s) 346
AxyI CCTNAGG 2 cut(s) 38, 342
BanII GRGCYC 1 cut(s) 240
BbsI GAAGAC 1 cut(s) 177
Bbv12I GWGCWC 1 cut(s) 240
BbvCI CCTCAGC 1 cut(s) 467
BbvI GCAGC 3 cut(s) 173, 182, 300
BccI CCATC 1 cut(s) 226
BceAI ACGGC 3 cut(s) 127, 320, 419
BciT130I CCWGG 1 cut(s) 431
BcnI CCSGG 2 cut(s) 258, 395
BcoDI GTCTC 1 cut(s) 266
BfoI RGCGCY 1 cut(s) 294
BglII AGATCT 2 cut(s) 229, 310
BisI GCNGC 4 cut(s) 162, 171, 174, 289
BlsI GCNGC 4 cut(s) 163, 172, 175, 290
Bme1390I CCNGG 3 cut(s) 258, 395, 431
Bme18I GGWCC 1 cut(s) 346
BmeT110I CYCGRG 1 cut(s) 233
BmgBI CACGTC 1 cut(s) 183
BmgT120I GGNCC 1 cut(s) 346
BmrFI CCNGG 3 cut(s) 258, 395, 431
BmsI GCATC 3 cut(s) 400, 422, 472
BoxI GACNNNNGTC 1 cut(s) 351
BpiI GAAGAC 1 cut(s) 177
BplI GAGNNNNNCTC 2 cut(s) 97, 129
BpmI CTGGAG 2 cut(s) 230, 413
Bpu10I CCTNAGC 1 cut(s) 467
BpuEI CTTGAG 1 cut(s) 434
BpuMI CCSGG 2 cut(s) 258, 395
BsaHI GRCGYC 1 cut(s) 155
BsaI GGTCTC 1 cut(s) 266
BsaXI ACNNNNNCTCC 2 cut(s) 103, 133
Bsc4I CCNNNNNNNGG 2 cut(s) 39, 393
Bse118I RCCGGY 1 cut(s) 157
Bse1I ACTGG 1 cut(s) 521
Bse21I CCTNAGG 2 cut(s) 38, 342
BseBI CCWGG 1 cut(s) 431
BseLI CCNNNNNNNGG 2 cut(s) 39, 393
BseMII CTCAG 3 cut(s) 277, 321, 481
BseNI ACTGG 1 cut(s) 521
BseRI GAGGAG 4 cut(s) 105, 108, 202, 265
BseXI GCAGC 3 cut(s) 173, 182, 300
Bsh1236I CGCG 2 cut(s) 176, 372
BshFI GGCC 1 cut(s) 434
BsiHKAI GWGCWC 1 cut(s) 240
BsiHKCI CYCGRG 1 cut(s) 233
BsiSI CCGG 4 cut(s) 158, 167, 258, 394
BslFI GGGAC 1 cut(s) 339
BslI CCNNNNNNNGG 2 cut(s) 39, 393
BsmAI GTCTC 1 cut(s) 266
BsmFI GGGAC 1 cut(s) 339
BsmI GAATGC 1 cut(s) 423
BsnI GGCC 1 cut(s) 434
Bso31I GGTCTC 1 cut(s) 266
BsoBI CYCGRG 1 cut(s) 233
Bsp1286I GDGCHC 1 cut(s) 240
Bsp143I GATC 2 cut(s) 229, 310
BspACI CCGC 3 cut(s) 174, 370, 384
BspANI GGCC 1 cut(s) 434
BspCNI CTCAG 3 cut(s) 276, 320, 480
BspFNI CGCG 2 cut(s) 176, 372
BspQI GCTCTTC 1 cut(s) 245
BspTNI GGTCTC 1 cut(s) 266
BsrFI RCCGGY 1 cut(s) 157
BsrI ACTGG 1 cut(s) 521
BssAI RCCGGY 1 cut(s) 157
BssMI GATC 2 cut(s) 229, 310
BssNI GRCGYC 1 cut(s) 155
Bst2UI CCWGG 1 cut(s) 431
Bst4CI ACNGT 1 cut(s) 493
Bst6I CTCTTC 2 cut(s) 245, 320
BstACI GRCGYC 1 cut(s) 155
BstC8I GCNNGC 1 cut(s) 159
BstDEI CTNAG 5 cut(s) 38, 263, 307, 342, 467
BstFNI CGCG 2 cut(s) 176, 372
BstH2I RGCGCY 1 cut(s) 294
BstHHI GCGC 1 cut(s) 293
BstKTI GATC 2 cut(s) 232, 313
BstMAI GTCTC 1 cut(s) 266
BstMBI GATC 2 cut(s) 229, 310
BstMWI GCNNNNNNNGC 3 cut(s) 167, 170, 468
BstNI CCWGG 1 cut(s) 431
BstPAI GACNNNNGTC 1 cut(s) 351
BstSCI CCNGG 3 cut(s) 256, 393, 429
BstUI CGCG 2 cut(s) 176, 372
BstV1I GCAGC 3 cut(s) 173, 182, 300
BstV2I GAAGAC 1 cut(s) 177
BstX2I RGATCY 2 cut(s) 229, 310
BstYI RGATCY 2 cut(s) 229, 310
Bsu36I CCTNAGG 2 cut(s) 38, 342
BsuRI GGCC 1 cut(s) 434
BtrI CACGTC 1 cut(s) 183
Cac8I GCNNGC 1 cut(s) 159
CfoI GCGC 1 cut(s) 293
Cfr10I RCCGGY 1 cut(s) 157
Cfr13I GGNCC 1 cut(s) 346
CseI GACGC 3 cut(s) 163, 165, 361
CspCI CAANNNNNGTGG 2 cut(s) 52, 87
CviAII CATG 1 cut(s) 82
DdeI CTNAG 5 cut(s) 38, 263, 307, 342, 467
DpnI GATC 2 cut(s) 231, 312
DpnII GATC 2 cut(s) 229, 310
Eam1104I CTCTTC 2 cut(s) 245, 320
EarI CTCTTC 2 cut(s) 245, 320
Ecl136II GAGCTC 1 cut(s) 238
Eco24I GRGCYC 1 cut(s) 240
Eco31I GGTCTC 1 cut(s) 266
Eco47I GGWCC 1 cut(s) 346
Eco53kI GAGCTC 1 cut(s) 238
Eco81I CCTNAGG 2 cut(s) 38, 342
Eco88I CYCGRG 1 cut(s) 233
EcoICRI GAGCTC 1 cut(s) 238
EcoO109I RGGNCCY 1 cut(s) 346
EcoRII CCWGG 1 cut(s) 429
EcoT22I ATGCAT 1 cut(s) 415
EcoT38I GRGCYC 1 cut(s) 240
FaeI CATG 1 cut(s) 85
FaiI YATR 1 cut(s) 83
FaqI GGGAC 1 cut(s) 339
FatI CATG 1 cut(s) 81
Fnu4HI GCNGC 4 cut(s) 162, 171, 174, 289
FriOI GRGCYC 1 cut(s) 240
Fsp4HI GCNGC 4 cut(s) 162, 171, 174, 289
GlaI GCGC 1 cut(s) 292
GluI GCNGC 4 cut(s) 162, 171, 174, 289
GsuI CTGGAG 2 cut(s) 230, 413
HaeII RGCGCY 1 cut(s) 294
HaeIII GGCC 1 cut(s) 434
HapII CCGG 4 cut(s) 158, 167, 258, 394
HgaI GACGC 3 cut(s) 163, 165, 361
HhaI GCGC 1 cut(s) 293
Hin1I GRCGYC 1 cut(s) 155
Hin1II CATG 1 cut(s) 85
Hin6I GCGC 1 cut(s) 291
HinP1I GCGC 1 cut(s) 291
HinfI GANTC 2 cut(s) 108, 124
HpaII CCGG 4 cut(s) 158, 167, 258, 394
HphI GGTGA 1 cut(s) 352
Hpy166II GTNNAC 2 cut(s) 180, 514
Hpy188I TCNGA 3 cut(s) 123, 223, 310
Hpy188III TCNNGA 2 cut(s) 233, 247
Hpy8I GTNNAC 2 cut(s) 180, 514
Hpy99I CGWCG 3 cut(s) 157, 377, 503
HpyAV CCTTC 2 cut(s) 96, 367
HpyCH4III ACNGT 1 cut(s) 493
HpyCH4IV ACGT 1 cut(s) 182
HpyCH4V TGCA 1 cut(s) 413
HpyF10VI GCNNNNNNNGC 3 cut(s) 167, 170, 468
HpyF3I CTNAG 5 cut(s) 38, 263, 307, 342, 467
HpySE526I ACGT 1 cut(s) 182
Hsp92I GRCGYC 1 cut(s) 155
Hsp92II CATG 1 cut(s) 85
HspAI GCGC 1 cut(s) 291
KroI GCCGGC 1 cut(s) 157
KroNI GCCGGC 1 cut(s) 159
Kzo9I GATC 2 cut(s) 229, 310
LguI GCTCTTC 1 cut(s) 245
LmnI GCTCC 4 cut(s) 169, 272, 467, 476
Lsp1109I GCAGC 3 cut(s) 173, 182, 300
LweI GCATC 3 cut(s) 400, 422, 472
MaeII ACGT 1 cut(s) 182
MaeIII GTNAC 1 cut(s) 487
MalI GATC 2 cut(s) 231, 312
MboI GATC 2 cut(s) 229, 310
MboII GAAGA 5 cut(s) 6, 141, 177, 232, 307
MflI RGATCY 2 cut(s) 229, 310
MhlI GDGCHC 1 cut(s) 240
MlyI GAGTC 1 cut(s) 118
MmeI TCCRAC 3 cut(s) 57, 146, 303
Mph1103I ATGCAT 1 cut(s) 415
MroNI GCCGGC 1 cut(s) 157
MspI CCGG 4 cut(s) 158, 167, 258, 394
MspR9I CCNGG 3 cut(s) 258, 395, 431
Mva1269I GAATGC 1 cut(s) 423
MvaI CCWGG 1 cut(s) 431
MvnI CGCG 2 cut(s) 176, 372
MwoI GCNNNNNNNGC 3 cut(s) 167, 170, 468
NaeI GCCGGC 1 cut(s) 159
NciI CCSGG 2 cut(s) 258, 395
NdeII GATC 2 cut(s) 229, 310
NgoMIV GCCGGC 1 cut(s) 157
NlaIII CATG 1 cut(s) 85
NsiI ATGCAT 1 cut(s) 415
PaeR7I CTCGAG 1 cut(s) 233
PciSI GCTCTTC 1 cut(s) 245
PcsI WCGNNNNNNNCGW 1 cut(s) 333
PctI GAATGC 1 cut(s) 423
PdiI GCCGGC 1 cut(s) 159
PfeI GAWTC 1 cut(s) 108
PkrI GCNGC 4 cut(s) 163, 172, 175, 290
PleI GAGTC 1 cut(s) 118
PpsI GAGTC 1 cut(s) 118
PpuMI RGGWCCY 1 cut(s) 346
PshAI GACNNNNGTC 1 cut(s) 351
Psp124BI GAGCTC 1 cut(s) 240
Psp5II RGGWCCY 1 cut(s) 346
Psp6I CCWGG 1 cut(s) 429
PspGI CCWGG 1 cut(s) 429
PspPI GGNCC 1 cut(s) 346
PspPPI RGGWCCY 1 cut(s) 346
PsuI RGATCY 2 cut(s) 229, 310
SacI GAGCTC 1 cut(s) 240
SapI GCTCTTC 1 cut(s) 245
SatI GCNGC 4 cut(s) 162, 171, 174, 289
Sau3AI GATC 2 cut(s) 229, 310
Sau96I GGNCC 1 cut(s) 346
SchI GAGTC 1 cut(s) 118
ScrFI CCNGG 3 cut(s) 258, 395, 431
SduI GDGCHC 1 cut(s) 240
SfaNI GCATC 3 cut(s) 400, 422, 472
Sfr274I CTCGAG 1 cut(s) 233
SinI GGWCC 1 cut(s) 346
SlaI CTCGAG 1 cut(s) 233
SmlI CTYRAG 2 cut(s) 233, 449
SmoI CTYRAG 2 cut(s) 233, 449
SsiI CCGC 3 cut(s) 174, 370, 384
SstI GAGCTC 1 cut(s) 240
StyD4I CCNGG 3 cut(s) 256, 393, 429
TaaI ACNGT 1 cut(s) 493
TaiI ACGT 1 cut(s) 185
TaqI TCGA 5 cut(s) 152, 194, 234, 327, 498
TauI GCSGC 1 cut(s) 176
TfiI GAWTC 1 cut(s) 108
TseI GCWGC 3 cut(s) 161, 170, 288
TspDTI ATGAA 2 cut(s) 17, 98
TspGWI ACGGA 1 cut(s) 516
VpaK11BI GGWCC 1 cut(s) 346
XhoI CTCGAG 1 cut(s) 233
Zsp2I ATGCAT 1 cut(s) 415
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.